Wall clock time and date at job start Tue Mar 31 2020 20:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47228 * 2 1 4 4 C 1.50703 * 109.47346 * 119.99746 * 2 1 3 5 5 O 1.21280 * 120.00037 * 85.80028 * 4 2 1 6 6 N 1.34773 * 120.00143 * 265.52779 * 4 2 1 7 7 C 1.47031 * 125.64763 * 354.94558 * 6 4 2 8 8 C 1.54313 * 107.27586 * 180.97086 * 7 6 4 9 9 C 1.55156 * 102.86502 * 22.52582 * 8 7 6 10 10 H 1.09001 * 111.00865 * 82.37724 * 9 8 7 11 11 N 1.46904 * 111.00898 * 206.23043 * 9 8 7 12 12 C 1.46898 * 111.00357 * 168.23851 * 11 9 8 13 13 C 1.46897 * 110.99831 * 292.20027 * 11 9 8 14 14 C 1.50696 * 109.47339 * 169.99535 * 13 11 9 15 15 O 1.21294 * 119.99842 * 359.97438 * 14 13 11 16 16 N 1.34777 * 120.00140 * 179.97438 * 14 13 11 17 17 C 1.37100 * 119.99756 * 179.97438 * 16 14 13 18 18 H 1.07997 * 119.99916 * 0.02562 * 17 16 14 19 19 C 1.38949 * 119.99510 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00251 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99761 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47158 * 60.00075 * 21 19 17 23 23 H 1.48503 * 109.47024 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47284 * 300.00244 * 21 19 17 25 25 C 1.47425 * 125.65071 * 175.25773 * 6 4 2 26 26 C 1.52995 * 109.47489 * 239.99922 * 2 1 3 27 27 C 1.53782 * 113.61729 * 157.49226 * 26 2 1 28 28 C 1.53781 * 87.08264 * 220.01727 * 27 26 2 29 29 C 1.53781 * 113.61295 * 59.99745 * 26 2 1 30 30 H 1.09003 * 109.47001 * 174.75310 * 1 2 3 31 31 H 1.09003 * 109.47455 * 294.74913 * 1 2 3 32 32 H 1.08998 * 109.47557 * 54.75216 * 1 2 3 33 33 H 1.09004 * 109.87984 * 300.51425 * 7 6 4 34 34 H 1.08997 * 109.88103 * 61.67997 * 7 6 4 35 35 H 1.09003 * 110.92541 * 264.11385 * 8 7 6 36 36 H 1.08992 * 110.74321 * 140.85646 * 8 7 6 37 37 H 1.09007 * 109.46684 * 59.99948 * 12 11 9 38 38 H 1.09002 * 109.47016 * 179.97438 * 12 11 9 39 39 H 1.09001 * 109.47059 * 300.00370 * 12 11 9 40 40 H 1.09006 * 109.46991 * 289.99553 * 13 11 9 41 41 H 1.08995 * 109.47644 * 49.99179 * 13 11 9 42 42 H 0.96997 * 120.00275 * 0.02562 * 16 14 13 43 43 H 0.97003 * 119.99880 * 179.97438 * 20 19 17 44 44 H 1.09003 * 110.36449 * 274.67353 * 25 6 4 45 45 H 1.08997 * 110.36744 * 36.88240 * 25 6 4 46 46 H 1.08998 * 112.84875 * 288.80439 * 26 2 1 47 47 H 1.09001 * 113.61425 * 334.57599 * 27 26 2 48 48 H 1.09004 * 113.61205 * 105.47304 * 27 26 2 49 49 H 1.08994 * 113.61538 * 270.88367 * 28 27 26 50 50 H 1.09000 * 113.61009 * 139.97791 * 28 27 26 51 51 H 1.09002 * 113.61482 * 254.53078 * 29 26 2 52 52 H 1.08999 * 113.61590 * 25.34865 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.1620 -1.9162 1.2241 6 7 2.3428 -0.0051 2.3362 7 6 2.3393 1.4611 2.4465 8 6 2.7823 1.8137 3.8820 9 6 3.5623 0.5473 4.3238 10 1 4.5873 0.5707 3.9538 11 7 3.5355 0.3952 5.7847 12 6 4.0240 -0.9311 6.1850 13 6 4.3072 1.4602 6.4390 14 6 4.0589 1.4201 7.9248 15 8 3.3121 0.5867 8.3926 16 7 4.6666 2.3104 8.7339 17 6 4.4402 2.2742 10.0856 18 1 3.7753 1.5321 10.5021 19 6 5.0664 3.1924 10.9196 20 7 5.8751 4.0957 10.4127 21 14 4.7586 3.1427 12.7614 22 1 5.1807 1.8241 13.2985 23 1 5.5382 4.2197 13.4228 24 1 3.3116 3.3451 13.0271 25 6 2.7484 -0.5757 3.6336 26 6 2.0400 -0.7212 -1.2492 27 6 3.4727 -0.3275 -1.6461 28 6 2.9922 -0.3573 -3.1066 29 6 1.5811 -0.0723 -2.5657 30 1 -0.3633 -1.0234 -0.0940 31 1 -0.3634 0.4302 0.9333 32 1 -0.3634 0.5931 -0.8392 33 1 3.0364 1.8887 1.7258 34 1 1.3349 1.8439 2.2660 35 1 1.9188 1.9791 4.5263 36 1 3.4341 2.6873 3.8812 37 1 5.0496 -1.0602 5.8388 38 1 3.9940 -1.0167 7.2712 39 1 3.3915 -1.7003 5.7418 40 1 5.3693 1.3115 6.2440 41 1 3.9975 2.4280 6.0449 42 1 5.2636 2.9771 8.3598 43 1 6.3120 4.7369 10.9949 44 1 1.8704 -0.8281 4.2282 45 1 3.3697 -1.4585 3.4822 46 1 1.8759 -1.7982 -1.2128 47 1 3.7639 0.6650 -1.3022 48 1 4.2152 -1.0914 -1.4151 49 1 3.0898 -1.3350 -3.5785 50 1 3.3975 0.4504 -3.7160 51 1 0.7966 -0.6300 -3.0772 52 1 1.3538 0.9897 -2.4730 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190870094.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:28 Heat of formation + Delta-G solvation = -46.971059 kcal Electronic energy + Delta-G solvation = -29621.971697 eV Core-core repulsion = 25622.002761 eV Total energy + Delta-G solvation = -3999.968936 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.69813 -39.32980 -38.45957 -37.52301 -35.46854 -33.85306 -33.21373 -31.26474 -30.85914 -29.24392 -27.50613 -26.58943 -25.60626 -25.45595 -24.29165 -23.01419 -22.31999 -20.29143 -19.81364 -19.27840 -19.00736 -17.86487 -17.48277 -16.82856 -16.04906 -15.83383 -15.41729 -15.24785 -14.84653 -14.74238 -14.52370 -14.27335 -13.87037 -13.63830 -13.55950 -13.34657 -13.16772 -12.95717 -12.86494 -12.79894 -12.53212 -12.32359 -12.22930 -11.99271 -11.91802 -11.55410 -11.50177 -11.43929 -11.14391 -11.02039 -10.94595 -10.84220 -10.78819 -10.65964 -10.46944 -10.44906 -10.22436 -9.80946 -9.47903 -8.80332 -8.48141 -8.00424 -7.90470 -6.42865 -3.83656 2.48006 2.74028 3.19270 3.25123 3.29475 3.88771 3.93048 4.04274 4.20546 4.22720 4.31080 4.39156 4.49650 4.51269 4.67248 4.83110 4.88289 4.99057 5.03464 5.06139 5.13535 5.18504 5.27226 5.35167 5.35274 5.36872 5.38922 5.47470 5.56957 5.59130 5.61047 5.65085 5.67584 5.70487 5.78832 5.82311 5.85585 5.88634 5.92320 5.94796 6.06798 6.13050 6.19927 6.26926 6.53819 7.18369 7.33287 7.36332 7.54052 8.01696 8.04992 8.60560 9.16983 9.53051 10.04940 10.74741 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030818 B = 0.001874 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.351265 B =14941.575971 C =15149.895362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.096 4.096 3 H 0.088 0.912 4 C 0.535 3.465 5 O -0.541 6.541 6 N -0.618 5.618 7 C 0.103 3.897 8 C -0.126 4.126 9 C 0.069 3.931 10 H 0.055 0.945 11 N -0.507 5.507 12 C 0.019 3.981 13 C 0.046 3.954 14 C 0.444 3.556 15 O -0.577 6.577 16 N -0.564 5.564 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.115 3.885 26 C -0.096 4.096 27 C -0.140 4.140 28 C -0.142 4.142 29 C -0.134 4.134 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.015 0.985 38 H 0.099 0.901 39 H 0.062 0.938 40 H 0.048 0.952 41 H 0.089 0.911 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.102 0.898 47 H 0.079 0.921 48 H 0.067 0.933 49 H 0.079 0.921 50 H 0.067 0.933 51 H 0.068 0.932 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.403 -2.598 -25.513 26.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.117 4.117 3 H 0.107 0.893 4 C 0.324 3.676 5 O -0.418 6.418 6 N -0.353 5.353 7 C -0.021 4.021 8 C -0.164 4.164 9 C -0.041 4.041 10 H 0.072 0.928 11 N -0.231 5.231 12 C -0.129 4.129 13 C -0.085 4.085 14 C 0.229 3.771 15 O -0.461 6.461 16 N -0.200 5.200 17 C -0.429 4.429 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.544 5.544 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.008 4.008 26 C -0.114 4.114 27 C -0.177 4.177 28 C -0.179 4.179 29 C -0.171 4.171 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.034 0.966 38 H 0.117 0.883 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.120 0.880 47 H 0.098 0.902 48 H 0.086 0.914 49 H 0.098 0.902 50 H 0.086 0.914 51 H 0.086 0.914 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.234 -3.660 -25.006 26.030 hybrid contribution 1.231 0.581 0.536 1.463 sum -5.004 -3.080 -24.470 25.165 Atomic orbital electron populations 1.21661 0.92351 1.03077 1.02469 1.21299 0.97822 1.00073 0.92530 0.89337 1.20331 0.76868 0.87235 0.83140 1.90687 1.53550 1.14402 1.83140 1.48495 1.67832 1.07494 1.11477 1.22072 1.01480 0.80383 0.98116 1.22738 1.01663 0.97627 0.94417 1.22783 0.97438 0.95035 0.88850 0.92764 1.61630 1.54894 1.03107 1.03448 1.22587 0.96430 0.89188 1.04653 1.21868 0.95890 0.95654 0.95112 1.19696 0.85253 0.84997 0.87128 1.90492 1.39989 1.39314 1.76287 1.41854 1.41458 1.29569 1.07168 1.19647 1.26174 1.15475 0.81557 0.87952 1.25256 0.96292 0.95700 1.00678 1.69604 1.29789 1.18360 1.36598 0.85921 0.78501 0.77848 0.81964 1.19929 1.21000 1.19895 1.22213 0.99426 0.96186 0.82948 1.22507 0.96155 1.00828 0.91943 1.22986 0.96658 1.01741 0.96345 1.22783 0.96755 1.01953 0.96411 1.22937 0.97090 1.00953 0.96121 0.91768 0.92198 0.91254 0.91386 0.91069 0.88853 0.89872 0.96615 0.88303 0.91932 0.93425 0.89295 0.77516 0.91834 0.90087 0.90548 0.87982 0.90235 0.91436 0.90188 0.91443 0.91357 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 8.88 37.16 0.33 -0.68 16 2 C -0.10 -0.80 2.17 -91.77 -0.20 -1.00 16 3 H 0.09 0.60 6.75 -51.93 -0.35 0.25 16 4 C 0.54 6.44 6.84 -10.99 -0.08 6.36 16 5 O -0.54 -8.55 16.36 5.56 0.09 -8.46 16 6 N -0.62 -6.97 3.33 -170.52 -0.57 -7.53 16 7 C 0.10 0.88 5.99 -3.06 -0.02 0.86 16 8 C -0.13 -1.28 5.62 -24.90 -0.14 -1.42 16 9 C 0.07 0.85 2.71 -65.56 -0.18 0.68 16 10 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 11 N -0.51 -8.08 4.40 -233.74 -1.03 -9.11 16 12 C 0.02 0.31 8.93 60.06 0.54 0.84 16 13 C 0.05 0.79 5.36 -4.98 -0.03 0.76 16 14 C 0.44 10.18 7.47 -10.99 -0.08 10.10 16 15 O -0.58 -15.17 13.91 5.55 0.08 -15.09 16 16 N -0.56 -13.97 5.29 -10.96 -0.06 -14.03 16 17 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 18 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 21 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 C 0.11 1.46 5.10 -2.53 -0.01 1.45 16 26 C -0.10 -0.78 2.89 -89.81 -0.26 -1.04 16 27 C -0.14 -1.08 7.62 -25.92 -0.20 -1.28 16 28 C -0.14 -0.89 8.08 -25.92 -0.21 -1.10 16 29 C -0.13 -0.81 6.78 -25.92 -0.18 -0.99 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.38 7.64 -51.93 -0.40 -0.02 16 33 H 0.07 0.47 7.92 -51.93 -0.41 0.06 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 0.73 7.91 -51.93 -0.41 0.32 16 37 H 0.02 0.23 8.14 -51.92 -0.42 -0.19 16 38 H 0.10 1.93 5.82 -51.93 -0.30 1.63 16 39 H 0.06 0.91 6.96 -51.93 -0.36 0.55 16 40 H 0.05 0.76 8.12 -51.93 -0.42 0.33 16 41 H 0.09 1.34 7.01 -51.93 -0.36 0.98 16 42 H 0.39 9.27 7.90 -40.82 -0.32 8.94 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 45 H 0.08 1.04 7.88 -51.93 -0.41 0.63 16 46 H 0.10 1.03 7.64 -51.93 -0.40 0.63 16 47 H 0.08 0.56 7.96 -51.93 -0.41 0.15 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 LS Contribution 409.45 15.07 6.17 6.17 Total: -1.00 -32.18 409.45 -9.70 -41.88 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -9.14 Total: 8.12 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -0.95 Total: 5.69 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.93 Total: -54.15 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: 0.17 Total: -23.55 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.18 -9.70 -41.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190870094.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.091 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds