Wall clock time and date at job start Tue Mar 31 2020 21:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 119.99983 * 2 1 4 4 C 1.50702 * 120.00338 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.47369 * 94.99890 * 4 2 1 6 6 H 1.09001 * 109.46695 * 54.99957 * 5 4 2 7 7 C 1.53000 * 109.46896 * 295.00545 * 5 4 2 8 8 C 1.50699 * 109.47314 * 175.00241 * 5 4 2 9 9 O 1.21282 * 120.00106 * 34.11299 * 8 5 4 10 10 N 1.34779 * 120.00185 * 214.11226 * 8 5 4 11 11 C 1.47021 * 125.64217 * 5.04967 * 10 8 5 12 12 C 1.54339 * 107.26060 * 178.85130 * 11 10 8 13 13 C 1.55158 * 103.02195 * 338.13952 * 12 11 10 14 14 H 1.09002 * 111.00720 * 277.23664 * 13 12 11 15 15 N 1.46897 * 111.00500 * 153.38222 * 13 12 11 16 16 C 1.46903 * 111.00219 * 191.76237 * 15 13 12 17 17 C 1.46898 * 111.00017 * 67.80243 * 15 13 12 18 18 C 1.50698 * 109.47203 * 190.00057 * 17 15 13 19 19 O 1.21297 * 120.00229 * 0.02562 * 18 17 15 20 20 N 1.34770 * 120.00314 * 180.02562 * 18 17 15 21 21 C 1.37097 * 120.00558 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99762 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00499 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00013 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00066 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47193 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46876 * 120.00397 * 25 23 21 28 28 H 1.48504 * 109.47350 * 239.99835 * 25 23 21 29 29 C 1.47417 * 125.64916 * 185.36166 * 10 8 5 30 30 H 1.07997 * 120.00443 * 0.02562 * 1 2 3 31 31 H 1.08005 * 119.99929 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47355 * 240.00067 * 3 2 1 33 33 H 1.08996 * 109.46894 * 0.02562 * 3 2 1 34 34 H 1.09003 * 109.46680 * 119.99934 * 3 2 1 35 35 H 1.09003 * 109.46933 * 334.99943 * 4 2 1 36 36 H 1.09000 * 109.47550 * 215.00129 * 4 2 1 37 37 H 1.09001 * 109.46801 * 296.82677 * 7 5 4 38 38 H 1.09002 * 109.47075 * 176.83962 * 7 5 4 39 39 H 1.08994 * 109.47327 * 56.83389 * 7 5 4 40 40 H 1.08993 * 109.88900 * 298.39145 * 11 10 8 41 41 H 1.08998 * 109.88230 * 59.56464 * 11 10 8 42 42 H 1.09009 * 110.84943 * 219.67452 * 12 11 10 43 43 H 1.08996 * 110.67199 * 96.52694 * 12 11 10 44 44 H 1.09002 * 109.46830 * 59.99579 * 16 15 13 45 45 H 1.09000 * 109.47070 * 179.97438 * 16 15 13 46 46 H 1.08999 * 109.46728 * 299.99661 * 16 15 13 47 47 H 1.08996 * 109.47204 * 310.00100 * 17 15 13 48 48 H 1.08996 * 109.46901 * 70.00720 * 17 15 13 49 49 H 0.97001 * 119.99797 * 359.97438 * 20 18 17 50 50 H 0.96997 * 120.00589 * 179.97438 * 24 23 21 51 51 H 1.09003 * 110.36593 * 322.92524 * 29 10 8 52 52 H 1.08998 * 110.36813 * 85.25258 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4377 6 1 2.9770 -0.8638 -1.9010 7 6 1.1488 -1.9537 -2.2332 8 6 3.2854 -2.9222 -1.4293 9 8 3.1030 -3.7805 -0.5920 10 7 4.2554 -3.0765 -2.3522 11 6 4.6527 -2.0756 -3.3531 12 6 5.8158 -2.6797 -4.1682 13 6 6.3798 -3.7690 -3.2181 14 1 7.0659 -3.3356 -2.4904 15 7 7.0314 -4.8442 -3.9778 16 6 7.3161 -5.9996 -3.1164 17 6 8.2550 -4.3603 -4.6311 18 6 8.7598 -5.4071 -5.5904 19 8 8.1592 -6.4531 -5.7179 20 7 9.8787 -5.1810 -6.3069 21 6 10.3378 -6.1330 -7.1801 22 1 9.8030 -7.0644 -7.2935 23 6 11.4911 -5.8997 -7.9191 24 7 12.1421 -4.7666 -7.7807 25 14 12.1169 -7.1972 -9.1083 26 1 11.2113 -8.3737 -9.0786 27 1 12.1513 -6.6341 -10.4820 28 1 13.4852 -7.6149 -8.7101 29 6 5.0894 -4.2791 -2.5293 30 1 -0.5401 0.9352 -0.0004 31 1 -0.5400 -0.9354 -0.0004 32 1 2.6901 1.3629 -0.8899 33 1 1.3551 2.1336 0.0005 34 1 2.6901 1.3628 0.8900 35 1 1.4386 -2.0856 0.4334 36 1 2.9742 -1.1991 0.5889 37 1 0.6276 -2.8092 -1.8034 38 1 1.4049 -2.1683 -3.2708 39 1 0.5030 -1.0767 -2.1922 40 1 3.8120 -1.8550 -4.0108 41 1 4.9853 -1.1649 -2.8550 42 1 6.5727 -1.9250 -4.3820 43 1 5.4472 -3.1265 -5.0916 44 1 6.3836 -6.3811 -2.7004 45 1 7.7980 -6.7810 -3.7041 46 1 7.9776 -5.6941 -2.3057 47 1 8.0368 -3.4423 -5.1767 48 1 9.0158 -4.1623 -3.8762 49 1 10.3589 -4.3443 -6.2053 50 1 12.9474 -4.6037 -8.2963 51 1 5.3257 -4.7227 -1.5620 52 1 4.5806 -5.0033 -3.1655 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191868774.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:06 Heat of formation + Delta-G solvation = -52.763159 kcal Electronic energy + Delta-G solvation = -29355.390712 eV Core-core repulsion = 25355.170612 eV Total energy + Delta-G solvation = -4000.220100 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.54712 -38.95585 -37.90052 -36.93355 -35.48641 -33.85459 -33.11336 -31.26986 -30.90072 -29.27391 -27.68902 -27.49381 -27.44335 -25.57513 -24.41114 -23.07116 -22.36995 -20.26529 -19.32206 -19.02983 -18.74996 -17.87033 -17.47898 -16.78948 -16.01481 -15.59330 -15.36598 -15.06466 -14.88946 -14.71361 -14.51739 -14.19915 -13.92893 -13.85263 -13.58100 -13.56096 -13.44818 -13.08094 -12.93787 -12.88204 -12.43253 -12.32287 -12.23702 -12.03382 -11.92354 -11.64396 -11.52834 -11.45131 -11.37838 -11.23741 -11.12795 -11.03504 -10.95124 -10.79335 -10.35366 -10.23994 -9.89203 -9.50307 -9.38908 -8.82965 -8.48829 -8.01004 -7.91123 -6.43552 -3.84249 1.82148 2.44159 2.73979 3.15069 3.25971 3.33114 3.88184 3.92244 4.06540 4.21728 4.40256 4.44753 4.50026 4.58931 4.70208 4.78841 4.87665 4.98028 5.04728 5.12270 5.13757 5.17687 5.26492 5.26849 5.33391 5.42161 5.42838 5.46286 5.56823 5.57944 5.59642 5.63998 5.69586 5.76534 5.78004 5.83796 5.85225 5.88476 5.93710 6.05446 6.11768 6.26274 6.27042 6.50382 6.53237 7.17282 7.32137 7.33277 7.53983 7.97067 8.04932 8.59924 9.16709 9.52611 10.04349 10.74240 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030212 B = 0.001824 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.562911 B =15348.291489 C =15750.970219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.123 4.123 3 C -0.121 4.121 4 C -0.070 4.070 5 C -0.098 4.098 6 H 0.090 0.910 7 C -0.142 4.142 8 C 0.534 3.466 9 O -0.541 6.541 10 N -0.617 5.617 11 C 0.102 3.898 12 C -0.127 4.127 13 C 0.069 3.931 14 H 0.055 0.945 15 N -0.507 5.507 16 C 0.019 3.981 17 C 0.046 3.954 18 C 0.444 3.556 19 O -0.576 6.576 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.115 3.885 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.099 0.901 46 H 0.016 0.984 47 H 0.089 0.911 48 H 0.048 0.952 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.077 0.923 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.873 14.178 13.017 26.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.123 4.123 3 C -0.177 4.177 4 C -0.108 4.108 5 C -0.120 4.120 6 H 0.108 0.892 7 C -0.200 4.200 8 C 0.322 3.678 9 O -0.418 6.418 10 N -0.352 5.352 11 C -0.021 4.021 12 C -0.165 4.165 13 C -0.041 4.041 14 H 0.073 0.927 15 N -0.231 5.231 16 C -0.129 4.129 17 C -0.085 4.085 18 C 0.230 3.770 19 O -0.461 6.461 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.008 4.008 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.111 0.889 44 H 0.081 0.919 45 H 0.117 0.883 46 H 0.034 0.966 47 H 0.107 0.893 48 H 0.066 0.934 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.095 0.905 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.582 12.918 12.973 26.085 hybrid contribution 1.397 0.332 -0.033 1.436 sum -17.185 13.250 12.940 25.265 Atomic orbital electron populations 1.23770 0.95171 1.01911 1.02196 1.21698 0.95448 0.95441 0.99723 1.20893 1.00307 0.94285 1.02258 1.20519 1.00813 0.94764 0.94682 1.21184 0.97020 0.95573 0.98206 0.89212 1.21782 0.95737 1.02966 0.99518 1.20327 0.79394 0.88429 0.79606 1.90703 1.69322 1.44561 1.37194 1.48484 1.35793 1.17485 1.33429 1.22088 0.97864 0.91741 0.90398 1.22743 0.96733 0.97832 0.99156 1.22779 0.94630 0.92315 0.94377 0.92732 1.61631 1.25260 1.05679 1.30511 1.22588 1.00523 0.94511 0.95254 1.21869 0.90869 0.98489 0.97306 1.19697 0.83267 0.88936 0.85147 1.90494 1.58617 1.27780 1.69160 1.41867 1.22614 1.18709 1.36915 1.19749 1.07586 0.98880 1.16529 0.87836 1.25257 0.96497 0.97482 0.98724 1.69616 1.18752 1.23776 1.42197 0.85806 0.78576 0.80446 0.79554 1.19213 1.20761 1.20792 1.22226 0.90174 0.87587 1.00799 0.88481 0.88347 0.91537 0.91980 0.91558 0.90030 0.91006 0.91872 0.92148 0.90817 0.91005 0.91332 0.89834 0.88876 0.91929 0.88292 0.96591 0.89285 0.93408 0.77524 0.91937 0.90479 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.22 12.43 29.02 0.36 -0.86 16 2 C -0.12 -0.84 4.79 -101.06 -0.48 -1.32 16 3 C -0.12 -0.66 10.12 36.01 0.36 -0.30 16 4 C -0.07 -0.58 4.43 -27.88 -0.12 -0.71 16 5 C -0.10 -0.83 2.41 -91.77 -0.22 -1.05 16 6 H 0.09 0.61 6.96 -51.93 -0.36 0.25 16 7 C -0.14 -1.08 8.90 37.16 0.33 -0.75 16 8 C 0.53 6.35 6.85 -10.98 -0.08 6.27 16 9 O -0.54 -8.47 16.59 5.56 0.09 -8.38 16 10 N -0.62 -6.87 3.33 -170.52 -0.57 -7.44 16 11 C 0.10 0.86 6.01 -3.06 -0.02 0.84 16 12 C -0.13 -1.26 5.61 -24.89 -0.14 -1.40 16 13 C 0.07 0.85 2.72 -65.56 -0.18 0.67 16 14 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 15 N -0.51 -8.02 4.40 -233.75 -1.03 -9.05 16 16 C 0.02 0.30 8.93 60.07 0.54 0.84 16 17 C 0.05 0.78 5.36 -4.98 -0.03 0.75 16 18 C 0.44 10.15 7.47 -10.99 -0.08 10.07 16 19 O -0.58 -15.13 13.91 5.54 0.08 -15.05 16 20 N -0.56 -13.95 5.29 -10.96 -0.06 -14.01 16 21 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.17 13.05 55.50 0.72 -23.45 16 25 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 C 0.11 1.44 5.10 -2.53 -0.01 1.43 16 30 H 0.10 0.51 7.83 -52.49 -0.41 0.10 16 31 H 0.10 0.62 7.99 -52.48 -0.42 0.20 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.29 7.78 -51.93 -0.40 -0.11 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.78 7.86 -51.93 -0.41 0.37 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.47 6.32 -51.93 -0.33 0.14 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.46 7.92 -51.93 -0.41 0.05 16 42 H 0.08 0.72 7.91 -51.92 -0.41 0.31 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.06 0.90 6.96 -51.93 -0.36 0.54 16 45 H 0.10 1.92 5.83 -51.93 -0.30 1.62 16 46 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.09 1.33 7.01 -51.93 -0.36 0.97 16 48 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 49 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 50 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 51 H 0.08 1.03 7.88 -51.93 -0.41 0.62 16 52 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 LS Contribution 414.87 15.07 6.25 6.25 Total: -1.00 -32.23 414.87 -8.61 -40.84 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -9.07 Total: 7.82 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -0.01 Total: 6.66 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.93 Total: -53.94 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: 0.17 Total: -23.43 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.23 -8.61 -40.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191868774.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.921 kcal (2) G-P(sol) polarization free energy of solvation -32.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds