Wall clock time and date at job start Tue Mar 31 2020 21:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 119.99983 * 2 1 4 4 C 1.50702 * 120.00338 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.47369 * 94.99890 * 4 2 1 6 6 H 1.09001 * 109.46695 * 54.99957 * 5 4 2 7 7 C 1.53000 * 109.46896 * 295.00545 * 5 4 2 8 8 C 1.50699 * 109.47314 * 175.00241 * 5 4 2 9 9 O 1.21282 * 120.00106 * 34.11299 * 8 5 4 10 10 N 1.34779 * 120.00185 * 214.11226 * 8 5 4 11 11 C 1.47021 * 125.64217 * 5.04967 * 10 8 5 12 12 C 1.54339 * 107.26060 * 178.85130 * 11 10 8 13 13 C 1.55158 * 103.02195 * 338.13952 * 12 11 10 14 14 H 1.09002 * 111.00720 * 277.23664 * 13 12 11 15 15 N 1.46897 * 111.00500 * 153.38222 * 13 12 11 16 16 C 1.46903 * 111.00219 * 191.76237 * 15 13 12 17 17 C 1.46898 * 111.00017 * 67.80243 * 15 13 12 18 18 C 1.50698 * 109.47203 * 190.00057 * 17 15 13 19 19 O 1.21297 * 120.00229 * 0.02562 * 18 17 15 20 20 N 1.34770 * 120.00314 * 180.02562 * 18 17 15 21 21 C 1.37097 * 120.00558 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99762 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00499 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00013 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00066 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47193 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46876 * 120.00397 * 25 23 21 28 28 H 1.48504 * 109.47350 * 239.99835 * 25 23 21 29 29 C 1.47417 * 125.64916 * 185.36166 * 10 8 5 30 30 H 1.07997 * 120.00443 * 0.02562 * 1 2 3 31 31 H 1.08005 * 119.99929 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47355 * 240.00067 * 3 2 1 33 33 H 1.08996 * 109.46894 * 0.02562 * 3 2 1 34 34 H 1.09003 * 109.46680 * 119.99934 * 3 2 1 35 35 H 1.09003 * 109.46933 * 334.99943 * 4 2 1 36 36 H 1.09000 * 109.47550 * 215.00129 * 4 2 1 37 37 H 1.09001 * 109.46801 * 296.82677 * 7 5 4 38 38 H 1.09002 * 109.47075 * 176.83962 * 7 5 4 39 39 H 1.08994 * 109.47327 * 56.83389 * 7 5 4 40 40 H 1.08993 * 109.88900 * 298.39145 * 11 10 8 41 41 H 1.08998 * 109.88230 * 59.56464 * 11 10 8 42 42 H 1.09009 * 110.84943 * 219.67452 * 12 11 10 43 43 H 1.08996 * 110.67199 * 96.52694 * 12 11 10 44 44 H 1.09002 * 109.46830 * 59.99579 * 16 15 13 45 45 H 1.09000 * 109.47070 * 179.97438 * 16 15 13 46 46 H 1.08999 * 109.46728 * 299.99661 * 16 15 13 47 47 H 1.08996 * 109.47204 * 310.00100 * 17 15 13 48 48 H 1.08996 * 109.46901 * 70.00720 * 17 15 13 49 49 H 0.97001 * 119.99797 * 359.97438 * 20 18 17 50 50 H 0.96997 * 120.00589 * 179.97438 * 24 23 21 51 51 H 1.09003 * 110.36593 * 322.92524 * 29 10 8 52 52 H 1.08998 * 110.36813 * 85.25258 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4377 6 1 2.9770 -0.8638 -1.9010 7 6 1.1488 -1.9537 -2.2332 8 6 3.2854 -2.9222 -1.4293 9 8 3.1030 -3.7805 -0.5920 10 7 4.2554 -3.0765 -2.3522 11 6 4.6527 -2.0756 -3.3531 12 6 5.8158 -2.6797 -4.1682 13 6 6.3798 -3.7690 -3.2181 14 1 7.0659 -3.3356 -2.4904 15 7 7.0314 -4.8442 -3.9778 16 6 7.3161 -5.9996 -3.1164 17 6 8.2550 -4.3603 -4.6311 18 6 8.7598 -5.4071 -5.5904 19 8 8.1592 -6.4531 -5.7179 20 7 9.8787 -5.1810 -6.3069 21 6 10.3378 -6.1330 -7.1801 22 1 9.8030 -7.0644 -7.2935 23 6 11.4911 -5.8997 -7.9191 24 7 12.1421 -4.7666 -7.7807 25 14 12.1169 -7.1972 -9.1083 26 1 11.2113 -8.3737 -9.0786 27 1 12.1513 -6.6341 -10.4820 28 1 13.4852 -7.6149 -8.7101 29 6 5.0894 -4.2791 -2.5293 30 1 -0.5401 0.9352 -0.0004 31 1 -0.5400 -0.9354 -0.0004 32 1 2.6901 1.3629 -0.8899 33 1 1.3551 2.1336 0.0005 34 1 2.6901 1.3628 0.8900 35 1 1.4386 -2.0856 0.4334 36 1 2.9742 -1.1991 0.5889 37 1 0.6276 -2.8092 -1.8034 38 1 1.4049 -2.1683 -3.2708 39 1 0.5030 -1.0767 -2.1922 40 1 3.8120 -1.8550 -4.0108 41 1 4.9853 -1.1649 -2.8550 42 1 6.5727 -1.9250 -4.3820 43 1 5.4472 -3.1265 -5.0916 44 1 6.3836 -6.3811 -2.7004 45 1 7.7980 -6.7810 -3.7041 46 1 7.9776 -5.6941 -2.3057 47 1 8.0368 -3.4423 -5.1767 48 1 9.0158 -4.1623 -3.8762 49 1 10.3589 -4.3443 -6.2053 50 1 12.9474 -4.6037 -8.2963 51 1 5.3257 -4.7227 -1.5620 52 1 4.5806 -5.0033 -3.1655 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191868774.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:05 Heat of formation + Delta-G solvation = -74.224910 kcal Electronic energy + Delta-G solvation = -29356.321363 eV Core-core repulsion = 25355.170612 eV Total energy + Delta-G solvation = -4001.150752 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.46531 -40.39889 -39.17765 -37.65898 -36.74556 -35.76972 -33.77894 -33.25930 -31.80652 -30.41367 -28.79784 -28.09613 -28.03866 -27.06506 -25.82436 -24.19319 -23.13265 -21.40164 -20.89960 -20.00160 -19.78939 -19.32928 -18.31232 -17.89675 -17.55029 -16.62160 -16.39711 -16.38423 -16.03916 -15.86303 -15.55256 -15.44676 -15.16192 -15.04280 -14.73837 -14.49953 -14.20364 -14.01641 -13.85822 -13.77637 -13.66795 -13.44632 -13.25183 -13.07746 -12.99760 -12.94224 -12.62817 -12.47033 -12.39966 -12.29092 -12.23920 -12.11859 -11.95584 -11.90270 -11.82652 -11.77292 -11.44497 -10.81577 -10.27280 -9.97622 -9.88882 -9.71793 -9.27035 -8.44994 -5.92932 1.30166 1.37290 1.42902 1.54766 1.56466 1.86959 2.08062 2.30116 2.77079 3.21683 3.24350 3.43262 3.63231 3.65662 3.82862 3.97951 4.04744 4.13197 4.16265 4.23817 4.30356 4.33046 4.36431 4.39796 4.53097 4.57197 4.58081 4.66389 4.68903 4.75169 4.78450 4.85951 4.86395 4.89411 4.92104 5.01756 5.07052 5.08913 5.14362 5.21368 5.22388 5.24722 5.27493 5.43563 5.78345 5.84474 6.01878 6.04276 6.17591 6.46050 6.63274 7.06626 7.15818 7.59455 8.15737 8.72550 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030212 B = 0.001824 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.562911 B =15348.291489 C =15750.970219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.128 4.128 3 C -0.120 4.120 4 C -0.067 4.067 5 C -0.089 4.089 6 H 0.116 0.884 7 C -0.139 4.139 8 C 0.528 3.472 9 O -0.588 6.588 10 N -0.617 5.617 11 C 0.102 3.898 12 C -0.122 4.122 13 C 0.072 3.928 14 H 0.067 0.933 15 N -0.523 5.523 16 C 0.025 3.975 17 C 0.060 3.940 18 C 0.442 3.558 19 O -0.615 6.615 20 N -0.574 5.574 21 C -0.330 4.330 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.990 3.010 26 H -0.275 1.275 27 H -0.271 1.271 28 H -0.272 1.272 29 C 0.117 3.883 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.030 0.970 47 H 0.117 0.883 48 H 0.067 0.933 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.063 0.937 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.082 17.057 12.720 27.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.128 4.128 3 C -0.177 4.177 4 C -0.105 4.105 5 C -0.110 4.110 6 H 0.134 0.866 7 C -0.196 4.196 8 C 0.318 3.682 9 O -0.469 6.469 10 N -0.350 5.350 11 C -0.020 4.020 12 C -0.160 4.160 13 C -0.037 4.037 14 H 0.085 0.915 15 N -0.248 5.248 16 C -0.123 4.123 17 C -0.071 4.071 18 C 0.229 3.771 19 O -0.501 6.501 20 N -0.212 5.212 21 C -0.460 4.460 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.814 3.186 26 H -0.200 1.200 27 H -0.196 1.196 28 H -0.197 1.197 29 C -0.006 4.006 30 H 0.129 0.871 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.125 0.875 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.048 0.952 47 H 0.135 0.865 48 H 0.085 0.915 49 H 0.230 0.770 50 H 0.086 0.914 51 H 0.082 0.918 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.785 15.844 12.667 27.648 hybrid contribution 1.396 -0.601 0.112 1.524 sum -17.389 15.244 12.779 26.421 Atomic orbital electron populations 1.23896 0.95153 1.02411 1.01492 1.21692 0.95563 0.95189 1.00366 1.20917 1.00508 0.93593 1.02674 1.20451 1.00363 0.95206 0.94513 1.21207 0.96871 0.94374 0.98592 0.86624 1.21770 0.95383 1.03013 0.99453 1.21024 0.79342 0.88957 0.78838 1.90680 1.70604 1.46421 1.39157 1.48587 1.35216 1.17503 1.33722 1.22309 0.98029 0.91610 0.90044 1.22767 0.97740 0.97398 0.98144 1.22796 0.94118 0.91788 0.94952 0.91477 1.61555 1.24863 1.06807 1.31558 1.22427 1.00944 0.93975 0.94945 1.21728 0.91759 0.96974 0.96625 1.20762 0.82036 0.89492 0.84780 1.90478 1.59495 1.29890 1.70244 1.41917 1.23475 1.18518 1.37263 1.19668 1.08646 0.99071 1.18597 0.90439 1.25980 0.96099 0.99393 0.99715 1.69667 1.19008 1.24723 1.42688 0.84907 0.77984 0.77820 0.77846 1.19968 1.19611 1.19749 1.22045 0.90663 0.88195 0.99731 0.87084 0.88811 0.90638 0.91062 0.91618 0.92045 0.91686 0.93555 0.91550 0.89204 0.89036 0.88479 0.87548 0.90238 0.91008 0.92151 0.95161 0.86481 0.91469 0.76970 0.91363 0.91845 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.09 12.43 67.79 0.84 -1.24 16 2 C -0.13 -1.49 4.79 -16.48 -0.08 -1.57 16 3 C -0.12 -1.00 10.12 71.24 0.72 -0.28 16 4 C -0.07 -1.06 4.43 29.85 0.13 -0.93 16 5 C -0.09 -1.34 2.41 -11.54 -0.03 -1.36 16 6 H 0.12 1.14 6.96 -2.39 -0.02 1.12 16 7 C -0.14 -1.86 8.90 71.98 0.64 -1.22 16 8 C 0.53 12.15 6.85 87.66 0.60 12.75 16 9 O -0.59 -18.90 16.59 -3.03 -0.05 -18.95 16 10 N -0.62 -12.73 3.33 -811.79 -2.70 -15.43 16 11 C 0.10 1.34 6.01 86.73 0.52 1.87 16 12 C -0.12 -2.06 5.61 31.79 0.18 -1.88 16 13 C 0.07 1.64 2.72 46.31 0.13 1.77 16 14 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 15 N -0.52 -16.14 4.40 -893.44 -3.93 -20.07 16 16 C 0.03 0.81 8.93 127.69 1.14 1.95 16 17 C 0.06 1.95 5.36 85.56 0.46 2.41 16 18 C 0.44 20.41 7.47 87.66 0.66 21.06 16 19 O -0.62 -33.37 13.91 -3.08 -0.04 -33.42 16 20 N -0.57 -28.72 5.29 -306.99 -1.62 -30.34 16 21 C -0.33 -18.50 9.68 84.04 0.81 -17.68 16 22 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 24 N -0.92 -48.77 13.05 21.66 0.28 -48.49 16 25 Si 0.99 42.61 29.55 68.60 2.03 44.64 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 29 C 0.12 2.89 5.10 86.86 0.44 3.33 16 30 H 0.11 0.89 7.83 -2.91 -0.02 0.87 16 31 H 0.09 1.09 7.99 -2.91 -0.02 1.06 16 32 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.07 0.47 7.78 -2.39 -0.02 0.45 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 1.20 7.86 -2.39 -0.02 1.18 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.09 0.93 6.32 -2.39 -0.02 0.91 16 40 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.10 0.81 7.92 -2.39 -0.02 0.79 16 42 H 0.11 1.35 7.91 -2.38 -0.02 1.33 16 43 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.07 2.13 6.96 -2.39 -0.02 2.12 16 45 H 0.06 2.44 5.83 -2.39 -0.01 2.43 16 46 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.12 3.17 7.01 -2.39 -0.02 3.15 16 48 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 49 H 0.40 18.69 7.90 -92.71 -0.73 17.96 16 50 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 51 H 0.06 1.72 7.88 -2.39 -0.02 1.70 16 52 H 0.06 1.80 8.11 -2.39 -0.02 1.78 16 Total: -1.00 -72.56 414.87 1.76 -70.80 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: 0.16 Total: 32.47 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: 7.63 Total: 18.79 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -7.97 Total: -114.33 kcal Atomic # 8 Polarization: -52.27 SS G_CDS: -0.09 Total: -52.37 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -72.56 1.76 -70.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191868774.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.429 kcal (2) G-P(sol) polarization free energy of solvation -72.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds