Wall clock time and date at job start Tue Mar 31 2020 21:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 119.99695 * 2 1 4 4 C 1.50697 * 119.99812 * 180.02562 * 2 1 3 5 5 C 1.52998 * 109.47125 * 95.00472 * 4 2 1 6 6 H 1.09003 * 109.47164 * 304.99589 * 5 4 2 7 7 C 1.53001 * 109.47609 * 64.99355 * 5 4 2 8 8 C 1.50696 * 109.47459 * 184.99768 * 5 4 2 9 9 O 1.21283 * 119.99777 * 347.17919 * 8 5 4 10 10 N 1.34773 * 120.00241 * 167.18319 * 8 5 4 11 11 C 1.47606 * 118.74896 * 4.99075 * 10 8 5 12 12 C 1.54169 * 111.09767 * 138.19833 * 11 10 8 13 13 C 1.51273 * 109.77748 * 320.24498 * 12 11 10 14 14 N 1.46204 * 109.10484 * 92.30260 * 13 12 11 15 15 C 1.46895 * 110.99777 * 144.77412 * 14 13 12 16 16 C 1.50705 * 109.47169 * 197.08551 * 15 14 13 17 17 O 1.21296 * 119.99578 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00407 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00068 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00246 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99802 * 180.02562 * 19 18 16 22 22 N 1.31405 * 120.00080 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99906 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47197 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47158 * 119.99862 * 23 21 19 26 26 H 1.48500 * 109.47289 * 239.99988 * 23 21 19 27 27 C 1.41444 * 116.34678 * 272.98318 * 14 13 12 28 28 C 1.44883 * 118.74666 * 185.25747 * 10 8 5 29 29 H 1.07995 * 120.00260 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.99566 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47016 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47355 * 300.00360 * 3 2 1 33 33 H 1.09000 * 109.46936 * 60.00263 * 3 2 1 34 34 H 1.09004 * 109.46976 * 214.99594 * 4 2 1 35 35 H 1.08999 * 109.47706 * 335.00055 * 4 2 1 36 36 H 1.09004 * 109.46757 * 51.53474 * 7 5 4 37 37 H 1.08998 * 109.47337 * 171.53267 * 7 5 4 38 38 H 1.08999 * 109.46712 * 291.53579 * 7 5 4 39 39 H 1.09001 * 109.11709 * 258.78637 * 11 10 8 40 40 H 1.08997 * 109.11317 * 17.84785 * 11 10 8 41 41 H 1.08997 * 109.45551 * 200.10287 * 12 11 10 42 42 H 1.09004 * 109.26649 * 80.26951 * 12 11 10 43 43 H 1.09003 * 109.53499 * 332.42201 * 13 12 11 44 44 H 1.08998 * 109.60193 * 212.23232 * 13 12 11 45 45 H 1.09000 * 109.47732 * 317.08574 * 15 14 13 46 46 H 1.09005 * 109.47175 * 77.08782 * 15 14 13 47 47 H 0.97003 * 119.99744 * 359.97438 * 18 16 15 48 48 H 0.97005 * 120.00497 * 180.02562 * 22 21 19 49 49 H 1.08998 * 109.37990 * 303.31951 * 27 14 13 50 50 H 1.08999 * 109.38087 * 183.64031 * 27 14 13 51 51 H 1.09000 * 109.44005 * 29.79330 * 28 10 8 52 52 H 1.08996 * 109.43915 * 149.66433 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6832 -1.4377 6 1 1.5246 -1.7024 -2.0482 7 6 3.4045 -0.6514 -2.0048 8 6 3.0717 -3.0455 -1.4510 9 8 3.4367 -3.5537 -0.4121 10 7 3.2423 -3.6989 -2.6173 11 6 2.8912 -3.0103 -3.8748 12 6 3.9470 -3.2757 -4.9664 13 6 5.3312 -3.2500 -4.3567 14 7 5.7071 -4.6077 -3.9655 15 6 7.1446 -4.8342 -4.1655 16 6 7.4251 -6.3149 -4.1623 17 8 6.5166 -7.1038 -4.0089 18 7 8.6853 -6.7625 -4.3299 19 6 8.9404 -8.1095 -4.3264 20 1 8.1317 -8.8119 -4.1890 21 6 10.2397 -8.5709 -4.4986 22 7 11.2239 -7.7161 -4.6643 23 14 10.5875 -10.4062 -4.4931 24 1 9.3185 -11.1499 -4.2884 25 1 11.1884 -10.8000 -5.7928 26 1 11.5321 -10.7278 -3.3934 27 6 5.3030 -5.0238 -2.6754 28 6 3.7580 -5.0526 -2.5887 29 1 -0.5400 0.9352 0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 3.1351 1.1060 0.0005 32 1 1.8001 1.8767 -0.8899 33 1 1.8001 1.8766 0.8900 34 1 2.9743 -1.1991 0.5889 35 1 1.4386 -2.0857 0.4333 36 1 4.2385 -0.5231 -1.3147 37 1 3.7799 -0.9974 -2.9679 38 1 2.8914 0.3013 -2.1357 39 1 1.9202 -3.3674 -4.2182 40 1 2.8308 -1.9379 -3.6897 41 1 3.8751 -2.5069 -5.7356 42 1 3.7652 -4.2535 -5.4125 43 1 5.3306 -2.6047 -3.4782 44 1 6.0456 -2.8703 -5.0871 45 1 7.4500 -4.4087 -5.1215 46 1 7.7032 -4.3568 -3.3603 47 1 9.4117 -6.1315 -4.4529 48 1 12.1310 -8.0382 -4.7849 49 1 5.6942 -4.3291 -1.9322 50 1 5.6952 -6.0214 -2.4778 51 1 3.4558 -5.5363 -1.6598 52 1 3.3576 -5.6112 -3.4346 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196880233.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:27 Heat of formation + Delta-G solvation = -62.955359 kcal Electronic energy + Delta-G solvation = -30416.505938 eV Core-core repulsion = 26415.843871 eV Total energy + Delta-G solvation = -4000.662067 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.77414 -40.44751 -38.90756 -37.69657 -36.42908 -35.76083 -34.05093 -33.27669 -33.25069 -30.51207 -28.75634 -28.14770 -27.44678 -26.91097 -25.92801 -24.56623 -22.63973 -21.66292 -21.07411 -19.96449 -19.66499 -19.27216 -18.17503 -17.90388 -17.25544 -16.78704 -16.69474 -16.38889 -16.30872 -15.91539 -15.68972 -15.55951 -15.33935 -15.04292 -14.67973 -14.54963 -14.32636 -14.19339 -13.88572 -13.62808 -13.49423 -13.26863 -13.06236 -13.03333 -12.91773 -12.71576 -12.53696 -12.52066 -12.41514 -12.35758 -12.17787 -12.12661 -11.96695 -11.87390 -11.74326 -11.56373 -11.46569 -10.68034 -10.28722 -10.00216 -9.86018 -9.65474 -9.08695 -8.46735 -5.95019 1.32347 1.35528 1.40565 1.54769 1.58485 2.03892 2.06395 2.27889 2.75569 3.19945 3.35286 3.44258 3.82397 3.86015 3.92528 4.00055 4.11899 4.12346 4.14508 4.23272 4.29431 4.34427 4.37954 4.46343 4.49510 4.54167 4.58978 4.69477 4.73949 4.77476 4.80708 4.87613 4.90963 4.92076 4.96958 5.01802 5.11283 5.12207 5.16799 5.17497 5.30176 5.37674 5.41159 5.64807 5.77142 5.92221 6.01559 6.14251 6.34203 6.54416 6.60886 7.13291 7.16041 7.56927 8.12703 8.70878 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025784 B = 0.002174 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.701459 B =12876.641540 C =13015.982014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.065 4.065 5 C -0.093 4.093 6 H 0.117 0.883 7 C -0.149 4.149 8 C 0.503 3.497 9 O -0.589 6.589 10 N -0.602 5.602 11 C 0.090 3.910 12 C -0.126 4.126 13 C 0.069 3.931 14 N -0.549 5.549 15 C 0.065 3.935 16 C 0.440 3.560 17 O -0.612 6.612 18 N -0.576 5.576 19 C -0.329 4.329 20 H 0.078 0.922 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.274 1.274 25 H -0.269 1.269 26 H -0.273 1.273 27 C 0.075 3.925 28 C 0.133 3.867 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.065 0.935 43 H 0.037 0.963 44 H 0.090 0.910 45 H 0.116 0.884 46 H 0.055 0.945 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.000 1.000 50 H 0.065 0.935 51 H 0.064 0.936 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.686 22.224 1.016 29.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.126 4.126 3 C -0.177 4.177 4 C -0.103 4.103 5 C -0.114 4.114 6 H 0.135 0.865 7 C -0.206 4.206 8 C 0.292 3.708 9 O -0.469 6.469 10 N -0.334 5.334 11 C -0.030 4.030 12 C -0.165 4.165 13 C -0.057 4.057 14 N -0.274 5.274 15 C -0.065 4.065 16 C 0.227 3.773 17 O -0.498 6.498 18 N -0.213 5.213 19 C -0.459 4.459 20 H 0.096 0.904 21 C -0.215 4.215 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.199 1.199 25 H -0.194 1.194 26 H -0.198 1.198 27 C -0.055 4.055 28 C 0.009 3.991 29 H 0.130 0.870 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.084 0.916 43 H 0.056 0.944 44 H 0.108 0.892 45 H 0.134 0.866 46 H 0.073 0.927 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.018 0.982 50 H 0.084 0.916 51 H 0.083 0.917 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.146 21.130 1.316 28.544 hybrid contribution 1.417 -0.831 0.822 1.837 sum -17.729 20.298 2.138 27.036 Atomic orbital electron populations 1.23807 0.95121 1.02457 1.01865 1.21709 0.95464 0.95225 1.00162 1.20967 0.99996 0.93879 1.02877 1.20448 0.99931 0.95025 0.94886 1.21303 1.00643 0.90433 0.98981 0.86523 1.22089 0.98376 0.98908 1.01223 1.21522 0.78145 0.88317 0.82790 1.90681 1.52441 1.69918 1.33905 1.48028 1.63551 1.14346 1.07465 1.22689 0.98754 0.99086 0.82486 1.21947 0.92588 1.04115 0.97827 1.21732 0.98488 0.85960 0.99567 1.57818 1.13988 1.26548 1.29006 1.21730 0.89361 0.92212 1.03229 1.20857 0.82589 0.91718 0.82125 1.90459 1.45139 1.58741 1.55457 1.41955 1.07647 1.07561 1.64158 1.19674 0.94093 0.83700 1.48417 0.90370 1.26033 0.94551 1.04457 0.96418 1.69676 1.00851 1.36188 1.49524 0.84878 0.78106 0.77079 0.78314 1.19863 1.19448 1.19798 1.21464 0.96537 0.99721 0.87757 1.21234 0.92169 0.83598 1.02085 0.86978 0.88835 0.91991 0.89915 0.91336 0.92222 0.92623 0.93164 0.90390 0.88569 0.89918 0.86439 0.86499 0.91647 0.94431 0.89186 0.86566 0.92702 0.77109 0.91362 0.98208 0.91648 0.91729 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.32 13.93 67.78 0.94 -1.38 16 2 C -0.13 -1.66 4.95 -16.49 -0.08 -1.75 16 3 C -0.12 -1.18 8.50 71.24 0.61 -0.57 16 4 C -0.06 -1.20 4.09 29.85 0.12 -1.07 16 5 C -0.09 -1.51 1.86 -11.54 -0.02 -1.53 16 6 H 0.12 1.39 7.59 -2.39 -0.02 1.37 16 7 C -0.15 -1.79 7.51 71.98 0.54 -1.25 16 8 C 0.50 12.91 6.88 87.66 0.60 13.51 16 9 O -0.59 -21.01 15.55 -3.04 -0.05 -21.06 16 10 N -0.60 -14.26 2.17 -817.21 -1.78 -16.04 16 11 C 0.09 1.31 5.42 86.56 0.47 1.78 16 12 C -0.13 -2.04 5.79 30.43 0.18 -1.86 16 13 C 0.07 1.51 5.32 85.87 0.46 1.97 16 14 N -0.55 -17.73 3.60 -916.19 -3.30 -21.03 16 15 C 0.07 2.31 5.44 85.56 0.47 2.78 16 16 C 0.44 21.27 7.37 87.66 0.65 21.92 16 17 O -0.61 -34.01 13.97 -3.08 -0.04 -34.05 16 18 N -0.58 -30.06 5.29 -306.98 -1.62 -31.68 16 19 C -0.33 -18.98 9.68 84.04 0.81 -18.17 16 20 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 21 C -0.02 -0.82 5.50 84.93 0.47 -0.36 16 22 N -0.92 -50.39 13.05 21.66 0.28 -50.11 16 23 Si 0.99 43.75 29.55 68.60 2.03 45.78 16 24 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 27 C 0.08 2.75 5.01 87.90 0.44 3.19 16 28 C 0.13 4.15 5.47 87.29 0.48 4.63 16 29 H 0.11 0.99 8.05 -2.91 -0.02 0.97 16 30 H 0.09 1.16 7.99 -2.91 -0.02 1.14 16 31 H 0.06 0.65 7.30 -2.39 -0.02 0.63 16 32 H 0.08 0.54 8.04 -2.39 -0.02 0.52 16 33 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 1.31 8.09 -2.38 -0.02 1.29 16 35 H 0.06 1.20 7.97 -2.39 -0.02 1.18 16 36 H 0.05 0.76 8.07 -2.38 -0.02 0.74 16 37 H 0.08 0.81 5.13 -2.39 -0.01 0.80 16 38 H 0.10 0.72 6.50 -2.39 -0.02 0.70 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.12 1.08 3.83 -2.39 -0.01 1.07 16 41 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.06 1.38 7.98 -2.38 -0.02 1.37 16 43 H 0.04 0.83 6.92 -2.39 -0.02 0.82 16 44 H 0.09 1.66 7.36 -2.39 -0.02 1.64 16 45 H 0.12 3.45 7.57 -2.39 -0.02 3.43 16 46 H 0.06 1.86 8.11 -2.38 -0.02 1.84 16 47 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 48 H 0.28 14.14 8.31 -92.70 -0.77 13.37 16 49 H 0.00 0.00 8.12 -2.39 -0.02 -0.02 16 50 H 0.07 2.96 5.62 -2.39 -0.01 2.95 16 51 H 0.06 2.22 7.37 -2.39 -0.02 2.20 16 52 H 0.09 2.64 8.11 -2.39 -0.02 2.62 16 Total: -1.00 -75.23 400.75 2.83 -72.41 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: 0.18 Total: 33.95 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: 7.13 Total: 21.84 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -6.42 Total: -118.86 kcal Atomic # 8 Polarization: -55.02 SS G_CDS: -0.09 Total: -55.11 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -75.23 2.83 -72.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196880233.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.451 kcal (2) G-P(sol) polarization free energy of solvation -75.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds