Wall clock time and date at job start Tue Mar 31 2020 20:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47289 * 2 1 4 4 C 1.50703 * 109.47276 * 240.00018 * 2 1 3 5 5 O 1.21280 * 119.99897 * 255.99754 * 4 2 1 6 6 N 1.34772 * 120.00015 * 75.99601 * 4 2 1 7 7 C 1.46927 * 120.62979 * 5.31010 * 6 4 2 8 8 C 1.53626 * 108.54284 * 126.37235 * 7 6 4 9 9 C 1.53036 * 109.24592 * 54.85500 * 8 7 6 10 10 N 1.46897 * 109.46375 * 178.48962 * 9 8 7 11 11 C 1.46901 * 111.00127 * 275.07324 * 10 9 8 12 12 C 1.50697 * 109.46752 * 179.97438 * 11 10 9 13 13 O 1.21297 * 120.00403 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99628 * 179.97438 * 12 11 10 15 15 C 1.37095 * 119.99821 * 179.97438 * 14 12 11 16 16 H 1.08004 * 120.00191 * 0.02562 * 15 14 12 17 17 C 1.38955 * 120.00150 * 180.02562 * 15 14 12 18 18 N 1.31408 * 120.00363 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99761 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47206 * 89.99725 * 19 17 15 21 21 H 1.48496 * 109.47130 * 210.00103 * 19 17 15 22 22 H 1.48501 * 109.47090 * 329.99945 * 19 17 15 23 23 C 1.53041 * 109.53736 * 298.51597 * 9 8 7 24 24 C 1.46927 * 120.63406 * 185.59109 * 6 4 2 25 25 C 1.52999 * 109.47113 * 120.00004 * 2 1 3 26 26 C 1.53771 * 113.61558 * 300.00100 * 25 2 1 27 27 C 1.53781 * 87.08504 * 220.01466 * 26 25 2 28 28 C 1.53782 * 87.17140 * 25.38857 * 27 26 25 29 29 H 1.09000 * 109.46651 * 56.81533 * 1 2 3 30 30 H 1.09000 * 109.47393 * 176.81469 * 1 2 3 31 31 H 1.09001 * 109.47242 * 296.81703 * 1 2 3 32 32 H 1.09004 * 109.59200 * 246.20309 * 7 6 4 33 33 H 1.08999 * 109.59056 * 6.62704 * 7 6 4 34 34 H 1.08999 * 109.63086 * 294.86437 * 8 7 6 35 35 H 1.09004 * 109.43329 * 174.72707 * 8 7 6 36 36 H 1.09001 * 109.45586 * 58.52840 * 9 8 7 37 37 H 1.00895 * 111.00037 * 151.11540 * 10 9 8 38 38 H 1.09000 * 109.46334 * 299.99436 * 11 10 9 39 39 H 1.08995 * 109.47169 * 59.99733 * 11 10 9 40 40 H 0.96994 * 120.00315 * 0.02562 * 14 12 11 41 41 H 0.96999 * 120.00212 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.49490 * 301.41225 * 23 9 8 43 43 H 1.09001 * 109.52345 * 181.32732 * 23 9 8 44 44 H 1.09002 * 109.58186 * 353.37597 * 24 6 4 45 45 H 1.09006 * 109.58703 * 113.65272 * 24 6 4 46 46 H 1.09005 * 112.90585 * 71.25331 * 25 2 1 47 47 H 1.09002 * 113.61529 * 105.46651 * 26 25 2 48 48 H 1.08998 * 113.69518 * 334.57743 * 26 25 2 49 49 H 1.08995 * 113.61769 * 139.97856 * 27 26 25 50 50 H 1.08999 * 113.61457 * 270.80512 * 27 26 25 51 51 H 1.09001 * 113.61402 * 89.15764 * 28 27 26 52 52 H 1.08995 * 113.62172 * 220.06370 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.4741 -1.8365 -1.1427 6 7 1.9907 -0.0944 -2.4285 7 6 1.5676 1.3086 -2.5344 8 6 2.6551 2.0914 -3.2859 9 6 2.9260 1.4138 -4.6310 10 7 3.9395 2.1791 -5.3693 11 6 3.3237 3.2823 -6.1186 12 6 4.3919 4.0431 -6.8610 13 8 5.5521 3.7004 -6.7740 14 7 4.0579 5.1045 -7.6216 15 6 5.0298 5.7970 -8.2965 16 1 6.0629 5.4918 -8.2191 17 6 4.6856 6.8915 -9.0803 18 7 5.6170 7.5550 -9.7277 19 14 2.8988 7.4199 -9.2138 20 1 2.5923 8.4034 -8.1443 21 1 2.6647 8.0429 -10.5412 22 1 2.0191 6.2332 -9.0618 23 6 3.4349 -0.0099 -4.3935 24 6 2.3617 -0.8148 -3.6541 25 6 2.0400 -0.7212 1.2492 26 6 1.5811 -0.0724 2.5656 27 6 2.9921 -0.3574 3.1066 28 6 3.4748 -0.3294 1.6468 29 1 -0.3632 0.5625 -0.8601 30 1 -0.3634 -1.0261 -0.0571 31 1 -0.3634 0.4636 0.9171 32 1 0.6272 1.3664 -3.0827 33 1 1.4374 1.7275 -1.5366 34 1 3.5707 2.1056 -2.6947 35 1 2.3149 3.1131 -3.4552 36 1 2.0042 1.3777 -5.2116 37 1 4.4711 1.5786 -5.9814 38 1 2.6025 2.8801 -6.8302 39 1 2.8154 3.9529 -5.4259 40 1 3.1302 5.3788 -7.6909 41 1 5.3767 8.3189 -10.2751 42 1 4.3432 0.0241 -3.7919 43 1 3.6502 -0.4842 -5.3510 44 1 2.7556 -1.7976 -3.3951 45 1 1.4842 -0.9290 -4.2906 46 1 1.8771 -1.7985 1.2134 47 1 0.7965 -0.6300 3.0771 48 1 1.3547 0.9900 2.4747 49 1 3.3975 0.4502 3.7161 50 1 3.0892 -1.3345 3.5798 51 1 3.7676 0.6626 1.3027 52 1 4.2167 -1.0941 1.4173 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201211841.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:10 Heat of formation + Delta-G solvation = -54.964490 kcal Electronic energy + Delta-G solvation = -29544.290156 eV Core-core repulsion = 25543.974599 eV Total energy + Delta-G solvation = -4000.315557 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.87464 -39.19002 -38.49339 -37.59216 -35.20942 -33.96603 -33.48159 -31.71541 -31.23246 -31.07138 -27.16915 -26.54961 -25.58884 -24.88511 -23.83322 -23.60478 -22.29498 -20.69851 -19.75718 -19.41440 -19.08738 -18.32810 -17.46149 -16.53532 -16.10174 -15.63560 -15.54048 -15.42726 -15.21651 -14.91143 -14.69038 -14.33960 -14.10482 -13.95135 -13.72522 -13.45723 -13.15562 -12.93387 -12.81781 -12.79389 -12.54494 -12.51227 -12.33126 -12.19816 -12.05874 -11.93336 -11.66687 -11.52138 -11.41766 -11.19626 -10.98773 -10.80188 -10.63051 -10.61872 -10.59077 -10.45674 -9.99502 -9.81074 -9.59465 -8.91452 -8.60594 -8.22691 -8.17704 -6.32893 -3.84427 2.41369 2.71067 2.99849 3.04511 3.12873 3.71488 3.97141 4.04407 4.08318 4.24801 4.29796 4.45366 4.48588 4.54752 4.65004 4.75626 4.80197 4.82627 4.92501 4.99899 5.02902 5.09047 5.18556 5.26626 5.27519 5.33474 5.37011 5.38873 5.40220 5.45239 5.55053 5.57658 5.59102 5.60136 5.66580 5.71041 5.75914 5.77876 5.81473 5.89237 5.95397 5.98749 6.17397 6.21251 6.28660 7.08980 7.14932 7.53875 7.56706 7.95667 8.12651 8.57806 8.93157 9.40406 9.80685 10.80219 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020279 B = 0.001963 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.395494 B =14262.021438 C =14453.062738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.095 0.905 4 C 0.523 3.477 5 O -0.541 6.541 6 N -0.611 5.611 7 C 0.105 3.895 8 C -0.125 4.125 9 C 0.089 3.911 10 N -0.665 5.665 11 C 0.049 3.951 12 C 0.449 3.551 13 O -0.564 6.564 14 N -0.591 5.591 15 C -0.305 4.305 16 H 0.119 0.881 17 C 0.041 3.959 18 N -0.881 5.881 19 Si 0.880 3.120 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.270 1.270 23 C -0.135 4.135 24 C 0.115 3.885 25 C -0.091 4.091 26 C -0.135 4.135 27 C -0.143 4.143 28 C -0.137 4.137 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.352 0.648 38 H 0.044 0.956 39 H 0.086 0.914 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.066 0.934 46 H 0.100 0.900 47 H 0.066 0.934 48 H 0.081 0.919 49 H 0.067 0.933 50 H 0.079 0.921 51 H 0.079 0.921 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.667 -14.878 21.214 30.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.113 0.887 4 C 0.311 3.689 5 O -0.418 6.418 6 N -0.345 5.345 7 C -0.018 4.018 8 C -0.164 4.164 9 C -0.022 4.022 10 N -0.298 5.298 11 C -0.084 4.084 12 C 0.235 3.765 13 O -0.446 6.446 14 N -0.230 5.230 15 C -0.434 4.434 16 H 0.137 0.863 17 C -0.162 4.162 18 N -0.521 5.521 19 Si 0.707 3.293 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.196 1.196 23 C -0.174 4.174 24 C -0.008 4.008 25 C -0.110 4.110 26 C -0.173 4.173 27 C -0.180 4.180 28 C -0.175 4.175 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.173 0.827 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.112 0.888 45 H 0.084 0.916 46 H 0.118 0.882 47 H 0.085 0.915 48 H 0.100 0.900 49 H 0.085 0.915 50 H 0.097 0.903 51 H 0.097 0.903 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.392 -15.140 21.685 30.110 hybrid contribution -1.805 0.344 -1.182 2.185 sum -16.197 -14.797 20.504 30.028 Atomic orbital electron populations 1.21733 0.92585 1.02835 1.02746 1.21374 0.97629 1.00485 0.92889 0.88729 1.20647 0.77589 0.86438 0.84226 1.90668 1.45986 1.19526 1.85649 1.48144 1.66881 1.12691 1.06790 1.21974 0.97608 0.80481 1.01743 1.22033 0.99134 0.99045 0.96142 1.21479 0.93813 0.92126 0.94738 1.60069 1.24154 1.13053 1.32511 1.21751 0.95740 0.94560 0.96366 1.19720 0.89775 0.83392 0.83629 1.90572 1.19865 1.68595 1.65550 1.42208 1.08909 1.27955 1.43951 1.19433 0.91698 1.08856 1.23402 0.86290 1.25049 0.98006 0.96441 0.96728 1.69619 1.32517 1.19894 1.30055 0.86663 0.84537 0.79265 0.78851 1.19591 1.20186 1.19567 1.22090 0.99383 0.94729 1.01196 1.21563 0.97645 0.96671 0.84947 1.22455 0.96276 1.00592 0.91693 1.22951 0.97100 1.00931 0.96288 1.22787 0.96708 1.01908 0.96595 1.22983 0.96648 1.01824 0.96032 0.92054 0.92078 0.91141 0.91262 0.89373 0.90457 0.90482 0.93873 0.82711 0.93808 0.89577 0.79722 0.91602 0.90317 0.90590 0.88820 0.91602 0.88206 0.91474 0.90045 0.91462 0.90266 0.90256 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 8.85 37.16 0.33 -0.50 16 2 C -0.10 -0.77 1.63 -91.77 -0.15 -0.92 16 3 H 0.09 0.61 6.35 -51.93 -0.33 0.28 16 4 C 0.52 5.49 6.88 -10.99 -0.08 5.42 16 5 O -0.54 -7.61 15.26 5.56 0.08 -7.52 16 6 N -0.61 -5.68 2.97 -172.50 -0.51 -6.19 16 7 C 0.11 0.77 5.51 -3.48 -0.02 0.76 16 8 C -0.12 -1.19 5.60 -26.39 -0.15 -1.34 16 9 C 0.09 0.96 2.45 -67.67 -0.17 0.79 16 10 N -0.66 -9.80 5.93 -107.95 -0.64 -10.44 16 11 C 0.05 0.77 5.96 -4.98 -0.03 0.74 16 12 C 0.45 10.03 7.82 -10.99 -0.09 9.94 16 13 O -0.56 -15.06 15.78 5.54 0.09 -14.98 16 14 N -0.59 -13.89 5.09 -10.96 -0.06 -13.94 16 15 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 16 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 17 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 18 N -0.88 -25.62 13.96 55.50 0.77 -24.84 16 19 Si 0.88 19.12 27.74 -169.99 -4.71 14.40 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.27 -5.31 6.52 56.52 0.37 -4.95 16 23 C -0.14 -1.36 5.36 -26.61 -0.14 -1.50 16 24 C 0.11 1.08 6.44 -3.71 -0.02 1.06 16 25 C -0.09 -0.72 2.70 -89.72 -0.24 -0.96 16 26 C -0.14 -0.82 6.62 -25.92 -0.17 -0.99 16 27 C -0.14 -0.94 8.08 -25.92 -0.21 -1.15 16 28 C -0.14 -1.12 7.64 -25.82 -0.20 -1.32 16 29 H 0.06 0.32 7.07 -51.93 -0.37 -0.05 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.32 7.34 -51.93 -0.38 -0.06 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.51 5.25 -51.93 -0.27 0.24 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.72 7.42 -51.93 -0.39 0.34 16 36 H 0.04 0.44 7.80 -51.93 -0.40 0.03 16 37 H 0.35 5.48 8.03 -39.29 -0.32 5.16 16 38 H 0.04 0.61 8.05 -51.93 -0.42 0.19 16 39 H 0.09 1.20 7.41 -51.93 -0.38 0.82 16 40 H 0.37 7.59 5.76 -40.82 -0.24 7.35 16 41 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 44 H 0.09 1.00 7.00 -51.93 -0.36 0.64 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.10 0.95 7.66 -51.93 -0.40 0.55 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.08 0.63 7.97 -51.93 -0.41 0.21 16 52 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 402.95 15.07 6.07 6.07 Total: -1.00 -33.98 402.95 -9.35 -43.34 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -8.87 Total: 11.81 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -1.58 Total: 2.30 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.43 Total: -55.42 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: 0.17 Total: -22.50 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.71 Total: 14.40 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.98 -9.35 -43.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201211841.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.628 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds