Wall clock time and date at job start Tue Mar 31 2020 20:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47289 * 2 1 4 4 C 1.50703 * 109.47276 * 240.00018 * 2 1 3 5 5 O 1.21280 * 119.99897 * 255.99754 * 4 2 1 6 6 N 1.34772 * 120.00015 * 75.99601 * 4 2 1 7 7 C 1.46927 * 120.62979 * 5.31010 * 6 4 2 8 8 C 1.53626 * 108.54284 * 126.37235 * 7 6 4 9 9 C 1.53036 * 109.24592 * 54.85500 * 8 7 6 10 10 N 1.46897 * 109.46375 * 178.48962 * 9 8 7 11 11 C 1.46901 * 111.00127 * 275.07324 * 10 9 8 12 12 C 1.50697 * 109.46752 * 179.97438 * 11 10 9 13 13 O 1.21297 * 120.00403 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99628 * 179.97438 * 12 11 10 15 15 C 1.37095 * 119.99821 * 179.97438 * 14 12 11 16 16 H 1.08004 * 120.00191 * 0.02562 * 15 14 12 17 17 C 1.38955 * 120.00150 * 180.02562 * 15 14 12 18 18 N 1.31408 * 120.00363 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99761 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47206 * 89.99725 * 19 17 15 21 21 H 1.48496 * 109.47130 * 210.00103 * 19 17 15 22 22 H 1.48501 * 109.47090 * 329.99945 * 19 17 15 23 23 C 1.53041 * 109.53736 * 298.51597 * 9 8 7 24 24 C 1.46927 * 120.63406 * 185.59109 * 6 4 2 25 25 C 1.52999 * 109.47113 * 120.00004 * 2 1 3 26 26 C 1.53771 * 113.61558 * 300.00100 * 25 2 1 27 27 C 1.53781 * 87.08504 * 220.01466 * 26 25 2 28 28 C 1.53782 * 87.17140 * 25.38857 * 27 26 25 29 29 H 1.09000 * 109.46651 * 56.81533 * 1 2 3 30 30 H 1.09000 * 109.47393 * 176.81469 * 1 2 3 31 31 H 1.09001 * 109.47242 * 296.81703 * 1 2 3 32 32 H 1.09004 * 109.59200 * 246.20309 * 7 6 4 33 33 H 1.08999 * 109.59056 * 6.62704 * 7 6 4 34 34 H 1.08999 * 109.63086 * 294.86437 * 8 7 6 35 35 H 1.09004 * 109.43329 * 174.72707 * 8 7 6 36 36 H 1.09001 * 109.45586 * 58.52840 * 9 8 7 37 37 H 1.00895 * 111.00037 * 151.11540 * 10 9 8 38 38 H 1.09000 * 109.46334 * 299.99436 * 11 10 9 39 39 H 1.08995 * 109.47169 * 59.99733 * 11 10 9 40 40 H 0.96994 * 120.00315 * 0.02562 * 14 12 11 41 41 H 0.96999 * 120.00212 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.49490 * 301.41225 * 23 9 8 43 43 H 1.09001 * 109.52345 * 181.32732 * 23 9 8 44 44 H 1.09002 * 109.58186 * 353.37597 * 24 6 4 45 45 H 1.09006 * 109.58703 * 113.65272 * 24 6 4 46 46 H 1.09005 * 112.90585 * 71.25331 * 25 2 1 47 47 H 1.09002 * 113.61529 * 105.46651 * 26 25 2 48 48 H 1.08998 * 113.69518 * 334.57743 * 26 25 2 49 49 H 1.08995 * 113.61769 * 139.97856 * 27 26 25 50 50 H 1.08999 * 113.61457 * 270.80512 * 27 26 25 51 51 H 1.09001 * 113.61402 * 89.15764 * 28 27 26 52 52 H 1.08995 * 113.62172 * 220.06370 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.4741 -1.8365 -1.1427 6 7 1.9907 -0.0944 -2.4285 7 6 1.5676 1.3086 -2.5344 8 6 2.6551 2.0914 -3.2859 9 6 2.9260 1.4138 -4.6310 10 7 3.9395 2.1791 -5.3693 11 6 3.3237 3.2823 -6.1186 12 6 4.3919 4.0431 -6.8610 13 8 5.5521 3.7004 -6.7740 14 7 4.0579 5.1045 -7.6216 15 6 5.0298 5.7970 -8.2965 16 1 6.0629 5.4918 -8.2191 17 6 4.6856 6.8915 -9.0803 18 7 5.6170 7.5550 -9.7277 19 14 2.8988 7.4199 -9.2138 20 1 2.5923 8.4034 -8.1443 21 1 2.6647 8.0429 -10.5412 22 1 2.0191 6.2332 -9.0618 23 6 3.4349 -0.0099 -4.3935 24 6 2.3617 -0.8148 -3.6541 25 6 2.0400 -0.7212 1.2492 26 6 1.5811 -0.0724 2.5656 27 6 2.9921 -0.3574 3.1066 28 6 3.4748 -0.3294 1.6468 29 1 -0.3632 0.5625 -0.8601 30 1 -0.3634 -1.0261 -0.0571 31 1 -0.3634 0.4636 0.9171 32 1 0.6272 1.3664 -3.0827 33 1 1.4374 1.7275 -1.5366 34 1 3.5707 2.1056 -2.6947 35 1 2.3149 3.1131 -3.4552 36 1 2.0042 1.3777 -5.2116 37 1 4.4711 1.5786 -5.9814 38 1 2.6025 2.8801 -6.8302 39 1 2.8154 3.9529 -5.4259 40 1 3.1302 5.3788 -7.6909 41 1 5.3767 8.3189 -10.2751 42 1 4.3432 0.0241 -3.7919 43 1 3.6502 -0.4842 -5.3510 44 1 2.7556 -1.7976 -3.3951 45 1 1.4842 -0.9290 -4.2906 46 1 1.8771 -1.7985 1.2134 47 1 0.7965 -0.6300 3.0771 48 1 1.3547 0.9900 2.4747 49 1 3.3975 0.4502 3.7161 50 1 3.0892 -1.3345 3.5798 51 1 3.7676 0.6626 1.3027 52 1 4.2167 -1.0941 1.4173 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201211841.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:09 Heat of formation + Delta-G solvation = -79.558634 kcal Electronic energy + Delta-G solvation = -29545.356638 eV Core-core repulsion = 25543.974599 eV Total energy + Delta-G solvation = -4001.382039 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.60569 -40.37745 -39.66911 -38.55427 -36.35428 -35.80315 -34.16764 -33.74238 -32.10490 -31.89758 -28.54029 -27.14089 -26.25647 -26.11424 -24.80371 -24.54055 -23.09779 -21.48492 -21.26635 -20.40031 -20.20664 -19.77526 -18.26826 -17.69584 -17.23290 -16.92464 -16.57373 -16.35501 -16.11857 -15.97232 -15.63546 -15.58256 -15.12860 -14.89039 -14.88031 -14.57718 -14.33162 -14.07734 -13.84592 -13.73729 -13.48410 -13.34647 -13.27524 -13.13742 -13.00338 -12.90800 -12.57733 -12.46302 -12.40732 -12.25965 -12.07073 -11.97185 -11.78199 -11.50803 -11.45420 -11.34858 -11.21770 -11.01398 -10.57893 -10.42844 -10.24603 -9.67236 -9.32101 -8.40725 -6.02051 1.30861 1.37113 1.46000 1.64002 1.96420 2.01773 2.24132 2.71698 3.15430 3.33713 3.43180 3.68143 3.72470 3.77654 3.82076 3.94671 4.02555 4.10096 4.15425 4.21427 4.28606 4.33881 4.37800 4.44512 4.46065 4.51662 4.61295 4.64450 4.72857 4.79453 4.84170 4.85777 4.86707 4.88988 4.96948 5.02940 5.04752 5.09718 5.14997 5.16645 5.33047 5.37833 5.40125 5.53791 5.56263 5.64248 5.92169 6.10208 6.37825 6.42646 6.60397 6.88723 7.19181 7.40349 7.97586 8.76984 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020279 B = 0.001963 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.395494 B =14262.021438 C =14453.062738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.097 4.097 3 H 0.112 0.888 4 C 0.515 3.485 5 O -0.588 6.588 6 N -0.611 5.611 7 C 0.108 3.892 8 C -0.123 4.123 9 C 0.091 3.909 10 N -0.686 5.686 11 C 0.064 3.936 12 C 0.447 3.553 13 O -0.617 6.617 14 N -0.590 5.590 15 C -0.330 4.330 16 H 0.053 0.947 17 C -0.018 4.018 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.256 1.256 21 H -0.277 1.277 22 H -0.229 1.229 23 C -0.128 4.128 24 C 0.117 3.883 25 C -0.096 4.096 26 C -0.121 4.121 27 C -0.141 4.141 28 C -0.146 4.146 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.343 0.657 38 H 0.078 0.922 39 H 0.117 0.883 40 H 0.391 0.609 41 H 0.279 0.721 42 H 0.052 0.948 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.098 0.902 49 H 0.076 0.924 50 H 0.077 0.923 51 H 0.083 0.917 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.758 -13.868 22.354 33.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.118 4.118 3 H 0.129 0.871 4 C 0.305 3.695 5 O -0.468 6.468 6 N -0.343 5.343 7 C -0.014 4.014 8 C -0.162 4.162 9 C -0.018 4.018 10 N -0.319 5.319 11 C -0.068 4.068 12 C 0.235 3.765 13 O -0.502 6.502 14 N -0.232 5.232 15 C -0.459 4.459 16 H 0.071 0.929 17 C -0.216 4.216 18 N -0.576 5.576 19 Si 0.787 3.213 20 H -0.180 1.180 21 H -0.202 1.202 22 H -0.152 1.152 23 C -0.167 4.167 24 C -0.006 4.006 25 C -0.115 4.115 26 C -0.159 4.159 27 C -0.178 4.178 28 C -0.184 4.184 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.127 0.873 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.163 0.837 38 H 0.096 0.904 39 H 0.135 0.865 40 H 0.226 0.774 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.106 0.894 46 H 0.094 0.906 47 H 0.094 0.906 48 H 0.116 0.884 49 H 0.095 0.905 50 H 0.095 0.905 51 H 0.101 0.899 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -19.515 -14.131 22.843 33.202 hybrid contribution -0.021 -0.053 -1.535 1.536 sum -19.536 -14.184 21.309 32.201 Atomic orbital electron populations 1.21741 0.90815 1.02522 1.04360 1.21417 0.98931 1.00572 0.90893 0.87065 1.21275 0.76871 0.86072 0.85320 1.90650 1.48106 1.21703 1.86351 1.48274 1.66171 1.13546 1.06356 1.22150 0.97535 0.78689 1.03072 1.22022 0.98999 0.99928 0.95223 1.21582 0.93500 0.91623 0.95097 1.60100 1.25791 1.13510 1.32465 1.21680 0.93443 0.94633 0.97025 1.21078 0.90662 0.82518 0.82272 1.90553 1.22976 1.69772 1.66877 1.42021 1.08893 1.28208 1.44063 1.18996 0.90342 1.10736 1.25815 0.92930 1.26176 1.04746 0.95516 0.95193 1.69811 1.36114 1.20679 1.30990 0.85331 0.76676 0.80256 0.79026 1.18010 1.20176 1.15183 1.22002 0.98596 0.95003 1.01107 1.21517 0.98098 0.95664 0.85331 1.22409 0.96238 0.99570 0.93232 1.22917 0.96734 1.01769 0.94451 1.22795 0.97260 1.02230 0.95563 1.23039 0.96475 1.01208 0.97673 0.90673 0.93366 0.89273 0.88684 0.87332 0.92785 0.89375 0.91532 0.83739 0.90409 0.86522 0.77376 0.91158 0.92874 0.90047 0.90790 0.89386 0.90584 0.90590 0.88363 0.90543 0.90469 0.89887 0.93684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.85 71.98 0.64 -0.54 16 2 C -0.10 -1.27 1.63 -11.54 -0.02 -1.29 16 3 H 0.11 1.09 6.35 -2.39 -0.02 1.07 16 4 C 0.51 10.44 6.88 87.66 0.60 11.05 16 5 O -0.59 -17.15 15.26 -3.03 -0.05 -17.19 16 6 N -0.61 -10.17 2.97 -818.05 -2.43 -12.60 16 7 C 0.11 1.16 5.51 86.51 0.48 1.64 16 8 C -0.12 -1.96 5.60 30.82 0.17 -1.79 16 9 C 0.09 1.71 2.45 44.94 0.11 1.82 16 10 N -0.69 -19.03 5.93 -495.46 -2.94 -21.97 16 11 C 0.06 1.82 5.96 85.56 0.51 2.33 16 12 C 0.45 19.70 7.82 87.66 0.69 20.39 16 13 O -0.62 -34.19 15.78 -3.08 -0.05 -34.24 16 14 N -0.59 -27.20 5.09 -306.98 -1.56 -28.77 16 15 C -0.33 -19.20 10.16 84.04 0.85 -18.34 16 16 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 17 C -0.02 -0.98 5.50 84.93 0.47 -0.52 16 18 N -0.94 -56.21 13.96 21.66 0.30 -55.91 16 19 Si 0.97 37.82 27.74 68.60 1.90 39.73 16 20 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 21 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 22 H -0.23 -7.36 6.52 99.48 0.65 -6.71 16 23 C -0.13 -2.46 5.36 30.67 0.16 -2.30 16 24 C 0.12 2.05 6.44 86.36 0.56 2.61 16 25 C -0.10 -1.45 2.70 -10.21 -0.03 -1.47 16 26 C -0.12 -1.19 6.62 31.12 0.21 -0.99 16 27 C -0.14 -1.72 8.08 31.12 0.25 -1.47 16 28 C -0.15 -2.40 7.64 31.18 0.24 -2.16 16 29 H 0.07 0.45 7.07 -2.39 -0.02 0.43 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.54 16 31 H 0.09 0.46 7.34 -2.39 -0.02 0.44 16 32 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.11 0.76 5.25 -2.39 -0.01 0.75 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.09 1.25 7.42 -2.38 -0.02 1.23 16 36 H 0.07 1.00 7.80 -2.39 -0.02 0.98 16 37 H 0.34 10.53 8.03 -89.70 -0.72 9.81 16 38 H 0.08 1.74 8.05 -2.39 -0.02 1.73 16 39 H 0.12 2.66 7.41 -2.39 -0.02 2.64 16 40 H 0.39 14.61 5.76 -92.71 -0.53 14.08 16 41 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 42 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.08 1.45 8.10 -2.39 -0.02 1.43 16 44 H 0.07 1.62 7.00 -2.39 -0.02 1.60 16 45 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 46 H 0.08 1.52 7.66 -2.38 -0.02 1.50 16 47 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.10 0.67 8.10 -2.39 -0.02 0.65 16 49 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 51 H 0.08 1.26 7.97 -2.39 -0.02 1.25 16 52 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -82.50 402.95 0.68 -81.82 By element: Atomic # 1 Polarization: 40.56 SS G_CDS: -0.39 Total: 40.17 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 5.89 Total: 8.96 kcal Atomic # 7 Polarization: -112.61 SS G_CDS: -6.63 Total: -119.24 kcal Atomic # 8 Polarization: -51.34 SS G_CDS: -0.09 Total: -51.43 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 1.90 Total: 39.73 kcal Total: -82.50 0.68 -81.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201211841.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.256 kcal (2) G-P(sol) polarization free energy of solvation -82.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds