Wall clock time and date at job start Tue Mar 31 2020 21:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00206 * 2 1 4 4 C 1.50697 * 119.99619 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.47428 * 94.99829 * 4 2 1 6 6 H 1.08992 * 109.47173 * 304.99751 * 5 4 2 7 7 C 1.53004 * 109.46996 * 64.99885 * 5 4 2 8 8 C 1.50704 * 109.47021 * 184.99635 * 5 4 2 9 9 O 1.21286 * 119.99966 * 263.40612 * 8 5 4 10 10 N 1.34768 * 119.99876 * 83.41151 * 8 5 4 11 11 C 1.46929 * 120.63489 * 4.62512 * 10 8 5 12 12 C 1.52757 * 109.01059 * 233.58644 * 11 10 8 13 13 C 1.53039 * 109.37995 * 305.58583 * 12 11 10 14 14 N 1.46904 * 109.44960 * 181.25282 * 13 12 11 15 15 C 1.46901 * 110.99867 * 84.93438 * 14 13 12 16 16 C 1.50704 * 109.46990 * 180.02562 * 15 14 13 17 17 O 1.21287 * 120.00133 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99855 * 180.02562 * 16 15 14 19 19 C 1.37094 * 119.99991 * 179.97438 * 18 16 15 20 20 H 1.08002 * 120.00226 * 0.02562 * 19 18 16 21 21 C 1.38955 * 120.00260 * 179.97438 * 19 18 16 22 22 N 1.31417 * 119.99612 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00022 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47205 * 60.00542 * 23 21 19 25 25 H 1.48506 * 109.46736 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47250 * 299.99924 * 23 21 19 27 27 C 1.53038 * 109.54015 * 61.24336 * 13 12 11 28 28 C 1.46928 * 120.62873 * 184.90602 * 10 8 5 29 29 H 1.08005 * 120.00352 * 179.97438 * 1 2 3 30 30 H 1.08007 * 119.99820 * 359.72443 * 1 2 3 31 31 H 1.09000 * 109.47128 * 89.99686 * 3 2 1 32 32 H 1.08995 * 109.47482 * 210.00250 * 3 2 1 33 33 H 1.09005 * 109.46930 * 330.00357 * 3 2 1 34 34 H 1.09003 * 109.46611 * 214.99834 * 4 2 1 35 35 H 1.08996 * 109.47505 * 334.99177 * 4 2 1 36 36 H 1.09001 * 109.47315 * 53.02955 * 7 5 4 37 37 H 1.09003 * 109.46980 * 173.03329 * 7 5 4 38 38 H 1.09001 * 109.46708 * 293.02533 * 7 5 4 39 39 H 1.09007 * 109.58066 * 353.41890 * 11 10 8 40 40 H 1.08996 * 109.58799 * 113.84175 * 11 10 8 41 41 H 1.08996 * 109.56409 * 185.54675 * 12 11 10 42 42 H 1.09000 * 109.35928 * 65.49146 * 12 11 10 43 43 H 1.08999 * 109.46038 * 301.21586 * 13 12 11 44 44 H 1.00902 * 110.99974 * 320.98709 * 14 13 12 45 45 H 1.09003 * 109.47447 * 300.00064 * 15 14 13 46 46 H 1.08999 * 109.47054 * 60.00378 * 15 14 13 47 47 H 0.97004 * 119.99938 * 359.97438 * 18 16 15 48 48 H 0.96994 * 119.99585 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.49831 * 178.68038 * 27 13 12 50 50 H 1.09000 * 109.49929 * 58.58214 * 27 13 12 51 51 H 1.09004 * 109.58358 * 246.15329 * 28 10 8 52 52 H 1.08998 * 109.58719 * 6.43638 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3051 -0.0006 5 6 2.4272 -1.6834 -1.4377 6 1 1.5244 -1.7026 -2.0480 7 6 3.4044 -0.6517 -2.0048 8 6 3.0715 -3.0457 -1.4508 9 8 4.2803 -3.1449 -1.4549 10 7 2.3044 -4.1538 -1.4580 11 6 0.8419 -4.0514 -1.5553 12 6 0.2109 -4.8276 -0.4008 13 6 0.7423 -6.2628 -0.4034 14 7 0.1138 -7.0191 0.6879 15 6 -1.1849 -7.5644 0.2707 16 6 -1.7982 -8.3314 1.4137 17 8 -1.2111 -8.4159 2.4717 18 7 -2.9988 -8.9244 1.2601 19 6 -3.5565 -9.6226 2.2997 20 1 -3.0341 -9.6972 3.2420 21 6 -4.7945 -10.2335 2.1415 22 7 -5.4304 -10.1423 0.9951 23 14 -5.5541 -11.1854 3.5579 24 1 -5.7477 -10.2777 4.7170 25 1 -6.8668 -11.7370 3.1359 26 1 -4.6517 -12.2989 3.9463 27 6 2.2597 -6.2471 -0.2048 28 6 2.9144 -5.4871 -1.3626 29 1 -0.5401 -0.9353 -0.0004 30 1 -0.5400 0.9354 0.0045 31 1 2.2451 1.6197 1.0277 32 1 3.0159 1.1748 -0.5138 33 1 1.4744 2.0647 -0.5138 34 1 2.9741 -1.1991 0.5889 35 1 1.4385 -2.0856 0.4335 36 1 4.2516 -0.5429 -1.3276 37 1 3.7593 -0.9850 -2.9801 38 1 2.8985 0.3080 -2.1109 39 1 0.5443 -3.0044 -1.4957 40 1 0.5081 -4.4749 -2.5024 41 1 -0.8726 -4.8406 -0.5189 42 1 0.4689 -4.3459 0.5423 43 1 0.5057 -6.7359 -1.3564 44 1 0.0176 -6.4486 1.5146 45 1 -1.8473 -6.7472 -0.0150 46 1 -1.0426 -8.2311 -0.5798 47 1 -3.4682 -8.8571 0.4138 48 1 -6.2948 -10.5684 0.8847 49 1 2.6344 -7.2705 -0.1833 50 1 2.4983 -5.7519 0.7365 51 1 2.7529 -6.0302 -2.2939 52 1 3.9840 -5.3872 -1.1786 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202108379.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:39 Heat of formation + Delta-G solvation = -66.378891 kcal Electronic energy + Delta-G solvation = -29578.434137 eV Core-core repulsion = 25577.623614 eV Total energy + Delta-G solvation = -4000.810523 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.75524 -38.68941 -37.85302 -37.12801 -35.12592 -33.88384 -33.15877 -31.45182 -31.24367 -30.93162 -28.32693 -26.97516 -26.75496 -25.04657 -24.00486 -23.49700 -22.46306 -20.74593 -19.39580 -18.94269 -18.71515 -17.90818 -17.75504 -16.22827 -16.05658 -15.71652 -15.36203 -15.12572 -14.90956 -14.74394 -14.59146 -14.32123 -14.19795 -13.91997 -13.87535 -13.59144 -13.45547 -13.26821 -12.87722 -12.68054 -12.49547 -12.37700 -12.24320 -11.94661 -11.75442 -11.60249 -11.52917 -11.50592 -11.46263 -11.41646 -11.25414 -11.06208 -10.93556 -10.65762 -10.45647 -10.22925 -9.91092 -9.51897 -9.34606 -8.91760 -8.48688 -8.06827 -7.97660 -6.43567 -3.84396 1.80974 2.41906 2.73174 3.18861 3.24624 3.29091 3.88500 4.04331 4.08128 4.26809 4.37556 4.44513 4.57589 4.63982 4.68630 4.77172 4.78941 4.90620 5.04495 5.08463 5.14897 5.15971 5.22733 5.26027 5.26726 5.34761 5.36356 5.44910 5.50018 5.50525 5.53554 5.59302 5.60559 5.69858 5.72287 5.73078 5.83537 5.91526 5.95383 5.99173 6.13807 6.25786 6.27057 6.34535 6.49966 7.13966 7.20249 7.53347 7.62456 7.93828 8.04241 8.59301 9.16028 9.52202 10.03746 10.74082 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017283 B = 0.002063 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.687775 B =13567.020387 C =14560.318216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.122 4.122 3 C -0.128 4.128 4 C -0.076 4.076 5 C -0.105 4.105 6 H 0.093 0.907 7 C -0.136 4.136 8 C 0.519 3.481 9 O -0.541 6.541 10 N -0.610 5.610 11 C 0.108 3.892 12 C -0.169 4.169 13 C 0.089 3.911 14 N -0.662 5.662 15 C 0.051 3.949 16 C 0.440 3.560 17 O -0.583 6.583 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.120 4.120 28 C 0.111 3.889 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.350 0.650 45 H 0.043 0.957 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.085 0.915 50 H 0.066 0.934 51 H 0.067 0.933 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.043 20.490 -9.648 25.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.122 4.122 3 C -0.184 4.184 4 C -0.114 4.114 5 C -0.126 4.126 6 H 0.111 0.889 7 C -0.193 4.193 8 C 0.308 3.692 9 O -0.418 6.418 10 N -0.344 5.344 11 C -0.015 4.015 12 C -0.209 4.209 13 C -0.022 4.022 14 N -0.293 5.293 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.467 6.467 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.159 4.159 28 C -0.011 4.011 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.170 0.830 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.104 0.896 50 H 0.085 0.915 51 H 0.086 0.914 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 13.230 19.681 -9.118 25.407 hybrid contribution -1.631 0.229 0.122 1.651 sum 11.599 19.910 -8.997 24.736 Atomic orbital electron populations 1.23753 0.95158 1.02127 1.02007 1.21613 0.95242 0.95346 0.99978 1.21060 1.00677 0.94371 1.02320 1.20620 1.00919 0.95178 0.94648 1.21344 1.00357 0.92496 0.98411 0.88854 1.21783 0.98649 0.97570 1.01328 1.20673 0.87123 0.85992 0.75446 1.90683 1.14236 1.87072 1.49838 1.48178 1.07027 1.06371 1.72786 1.21696 0.79266 1.01540 0.99030 1.22671 1.01065 0.97931 0.99201 1.21581 0.94342 0.90647 0.95619 1.60179 1.23101 1.40012 1.06044 1.21706 0.90053 0.98278 0.98139 1.19823 0.83140 0.85104 0.89426 1.90526 1.62570 1.64872 1.28778 1.41860 1.16688 1.46301 1.15167 1.19653 1.01365 1.27512 0.94409 0.87988 1.25266 0.96622 0.98179 0.97878 1.69603 1.15886 1.44894 1.23963 0.85913 0.77978 0.79709 0.80602 1.19914 1.20975 1.19867 1.21890 0.94553 1.01297 0.98182 1.21668 0.99068 0.81726 0.98681 0.88343 0.88333 0.91485 0.91005 0.91858 0.90405 0.90688 0.91576 0.92380 0.91404 0.89532 0.91013 0.90372 0.91112 0.90325 0.83035 0.93932 0.89642 0.77477 0.91816 0.89615 0.91474 0.91441 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.29 13.89 29.01 0.40 -0.89 16 2 C -0.12 -0.83 4.94 -101.07 -0.50 -1.33 16 3 C -0.13 -0.73 9.38 36.00 0.34 -0.40 16 4 C -0.08 -0.58 4.68 -27.89 -0.13 -0.71 16 5 C -0.10 -0.83 1.86 -91.77 -0.17 -1.00 16 6 H 0.09 0.62 6.37 -51.93 -0.33 0.29 16 7 C -0.14 -1.03 7.25 37.16 0.27 -0.76 16 8 C 0.52 5.60 6.81 -10.99 -0.07 5.53 16 9 O -0.54 -7.76 15.64 5.55 0.09 -7.67 16 10 N -0.61 -5.84 2.98 -173.03 -0.52 -6.36 16 11 C 0.11 0.83 6.08 -3.93 -0.02 0.80 16 12 C -0.17 -1.54 5.31 -26.84 -0.14 -1.68 16 13 C 0.09 0.99 2.43 -67.67 -0.16 0.83 16 14 N -0.66 -10.11 5.87 -107.94 -0.63 -10.74 16 15 C 0.05 0.85 5.96 -4.97 -0.03 0.82 16 16 C 0.44 10.20 7.82 -10.98 -0.09 10.11 16 17 O -0.58 -15.72 15.78 5.55 0.09 -15.64 16 18 N -0.56 -14.10 5.29 -10.96 -0.06 -14.15 16 19 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 22 N -0.90 -24.31 13.05 55.50 0.72 -23.58 16 23 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 C -0.12 -1.29 5.69 -26.61 -0.15 -1.45 16 28 C 0.11 1.11 6.42 -3.71 -0.02 1.08 16 29 H 0.10 0.64 7.99 -52.48 -0.42 0.22 16 30 H 0.10 0.59 8.04 -52.48 -0.42 0.17 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.39 5.65 -51.93 -0.29 0.10 16 33 H 0.06 0.32 8.06 -51.93 -0.42 -0.10 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.59 7.62 -51.93 -0.40 0.20 16 36 H 0.07 0.56 8.03 -51.93 -0.42 0.14 16 37 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 38 H 0.07 0.41 6.03 -51.93 -0.31 0.09 16 39 H 0.09 0.54 5.18 -51.92 -0.27 0.27 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.70 7.42 -51.93 -0.39 0.32 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.85 7.80 -51.93 -0.40 0.44 16 44 H 0.35 5.62 8.18 -39.29 -0.32 5.30 16 45 H 0.04 0.63 7.41 -51.93 -0.38 0.25 16 46 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 47 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 50 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 51 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 52 H 0.09 1.04 7.03 -51.93 -0.37 0.67 16 LS Contribution 410.55 15.07 6.19 6.19 Total: -1.00 -32.54 410.55 -8.65 -41.19 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -8.77 Total: 11.86 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -0.73 Total: 2.99 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.48 Total: -54.83 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.17 Total: -23.31 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.54 -8.65 -41.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202108379.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.192 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds