Wall clock time and date at job start Tue Mar 31 2020 21:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00206 * 2 1 4 4 C 1.50697 * 119.99619 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.47428 * 94.99829 * 4 2 1 6 6 H 1.08992 * 109.47173 * 304.99751 * 5 4 2 7 7 C 1.53004 * 109.46996 * 64.99885 * 5 4 2 8 8 C 1.50704 * 109.47021 * 184.99635 * 5 4 2 9 9 O 1.21286 * 119.99966 * 263.40612 * 8 5 4 10 10 N 1.34768 * 119.99876 * 83.41151 * 8 5 4 11 11 C 1.46929 * 120.63489 * 4.62512 * 10 8 5 12 12 C 1.52757 * 109.01059 * 233.58644 * 11 10 8 13 13 C 1.53039 * 109.37995 * 305.58583 * 12 11 10 14 14 N 1.46904 * 109.44960 * 181.25282 * 13 12 11 15 15 C 1.46901 * 110.99867 * 84.93438 * 14 13 12 16 16 C 1.50704 * 109.46990 * 180.02562 * 15 14 13 17 17 O 1.21287 * 120.00133 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99855 * 180.02562 * 16 15 14 19 19 C 1.37094 * 119.99991 * 179.97438 * 18 16 15 20 20 H 1.08002 * 120.00226 * 0.02562 * 19 18 16 21 21 C 1.38955 * 120.00260 * 179.97438 * 19 18 16 22 22 N 1.31417 * 119.99612 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00022 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47205 * 60.00542 * 23 21 19 25 25 H 1.48506 * 109.46736 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47250 * 299.99924 * 23 21 19 27 27 C 1.53038 * 109.54015 * 61.24336 * 13 12 11 28 28 C 1.46928 * 120.62873 * 184.90602 * 10 8 5 29 29 H 1.08005 * 120.00352 * 179.97438 * 1 2 3 30 30 H 1.08007 * 119.99820 * 359.72443 * 1 2 3 31 31 H 1.09000 * 109.47128 * 89.99686 * 3 2 1 32 32 H 1.08995 * 109.47482 * 210.00250 * 3 2 1 33 33 H 1.09005 * 109.46930 * 330.00357 * 3 2 1 34 34 H 1.09003 * 109.46611 * 214.99834 * 4 2 1 35 35 H 1.08996 * 109.47505 * 334.99177 * 4 2 1 36 36 H 1.09001 * 109.47315 * 53.02955 * 7 5 4 37 37 H 1.09003 * 109.46980 * 173.03329 * 7 5 4 38 38 H 1.09001 * 109.46708 * 293.02533 * 7 5 4 39 39 H 1.09007 * 109.58066 * 353.41890 * 11 10 8 40 40 H 1.08996 * 109.58799 * 113.84175 * 11 10 8 41 41 H 1.08996 * 109.56409 * 185.54675 * 12 11 10 42 42 H 1.09000 * 109.35928 * 65.49146 * 12 11 10 43 43 H 1.08999 * 109.46038 * 301.21586 * 13 12 11 44 44 H 1.00902 * 110.99974 * 320.98709 * 14 13 12 45 45 H 1.09003 * 109.47447 * 300.00064 * 15 14 13 46 46 H 1.08999 * 109.47054 * 60.00378 * 15 14 13 47 47 H 0.97004 * 119.99938 * 359.97438 * 18 16 15 48 48 H 0.96994 * 119.99585 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.49831 * 178.68038 * 27 13 12 50 50 H 1.09000 * 109.49929 * 58.58214 * 27 13 12 51 51 H 1.09004 * 109.58358 * 246.15329 * 28 10 8 52 52 H 1.08998 * 109.58719 * 6.43638 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3051 -0.0006 5 6 2.4272 -1.6834 -1.4377 6 1 1.5244 -1.7026 -2.0480 7 6 3.4044 -0.6517 -2.0048 8 6 3.0715 -3.0457 -1.4508 9 8 4.2803 -3.1449 -1.4549 10 7 2.3044 -4.1538 -1.4580 11 6 0.8419 -4.0514 -1.5553 12 6 0.2109 -4.8276 -0.4008 13 6 0.7423 -6.2628 -0.4034 14 7 0.1138 -7.0191 0.6879 15 6 -1.1849 -7.5644 0.2707 16 6 -1.7982 -8.3314 1.4137 17 8 -1.2111 -8.4159 2.4717 18 7 -2.9988 -8.9244 1.2601 19 6 -3.5565 -9.6226 2.2997 20 1 -3.0341 -9.6972 3.2420 21 6 -4.7945 -10.2335 2.1415 22 7 -5.4304 -10.1423 0.9951 23 14 -5.5541 -11.1854 3.5579 24 1 -5.7477 -10.2777 4.7170 25 1 -6.8668 -11.7370 3.1359 26 1 -4.6517 -12.2989 3.9463 27 6 2.2597 -6.2471 -0.2048 28 6 2.9144 -5.4871 -1.3626 29 1 -0.5401 -0.9353 -0.0004 30 1 -0.5400 0.9354 0.0045 31 1 2.2451 1.6197 1.0277 32 1 3.0159 1.1748 -0.5138 33 1 1.4744 2.0647 -0.5138 34 1 2.9741 -1.1991 0.5889 35 1 1.4385 -2.0856 0.4335 36 1 4.2516 -0.5429 -1.3276 37 1 3.7593 -0.9850 -2.9801 38 1 2.8985 0.3080 -2.1109 39 1 0.5443 -3.0044 -1.4957 40 1 0.5081 -4.4749 -2.5024 41 1 -0.8726 -4.8406 -0.5189 42 1 0.4689 -4.3459 0.5423 43 1 0.5057 -6.7359 -1.3564 44 1 0.0176 -6.4486 1.5146 45 1 -1.8473 -6.7472 -0.0150 46 1 -1.0426 -8.2311 -0.5798 47 1 -3.4682 -8.8571 0.4138 48 1 -6.2948 -10.5684 0.8847 49 1 2.6344 -7.2705 -0.1833 50 1 2.4983 -5.7519 0.7365 51 1 2.7529 -6.0302 -2.2939 52 1 3.9840 -5.3872 -1.1786 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202108379.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:38 Heat of formation + Delta-G solvation = -88.115026 kcal Electronic energy + Delta-G solvation = -29579.376686 eV Core-core repulsion = 25577.623614 eV Total energy + Delta-G solvation = -4001.753072 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.56102 -40.21332 -39.03732 -37.79913 -36.33684 -35.74773 -33.82040 -33.27503 -32.25107 -31.90840 -28.85108 -28.37524 -27.30374 -26.45494 -25.15513 -24.37712 -23.32216 -21.64876 -21.03946 -19.97480 -19.70793 -19.27964 -18.56889 -17.70380 -16.94627 -16.84216 -16.42566 -16.26510 -16.08997 -15.93574 -15.53888 -15.36164 -15.27956 -15.08070 -14.85503 -14.66350 -14.22159 -14.05145 -13.94321 -13.64015 -13.53647 -13.47685 -13.19033 -13.09767 -12.95094 -12.85484 -12.62690 -12.42852 -12.32524 -12.21454 -12.12613 -12.09249 -12.06579 -11.92044 -11.78838 -11.54180 -11.49359 -10.71413 -10.33850 -10.01008 -9.87738 -9.72647 -9.25204 -8.46269 -5.94750 1.26107 1.39922 1.42095 1.52646 1.63768 1.98369 2.06484 2.29448 2.91137 3.21185 3.39726 3.50766 3.72158 3.78083 3.92501 3.99269 4.03858 4.07155 4.16527 4.19566 4.31750 4.33517 4.37328 4.47584 4.48676 4.60672 4.64596 4.66929 4.72475 4.77106 4.79670 4.82354 4.86879 4.92241 4.94190 5.02847 5.07096 5.11821 5.15962 5.19152 5.25997 5.33216 5.41314 5.54497 5.77193 5.92207 5.99734 6.14485 6.36101 6.41565 6.61121 7.12531 7.13398 7.57369 8.13075 8.70756 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017283 B = 0.002063 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.687775 B =13567.020387 C =14560.318216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.128 4.128 3 C -0.129 4.129 4 C -0.071 4.071 5 C -0.098 4.098 6 H 0.114 0.886 7 C -0.133 4.133 8 C 0.514 3.486 9 O -0.584 6.584 10 N -0.609 5.609 11 C 0.109 3.891 12 C -0.161 4.161 13 C 0.091 3.909 14 N -0.679 5.679 15 C 0.067 3.933 16 C 0.436 3.564 17 O -0.626 6.626 18 N -0.573 5.573 19 C -0.334 4.334 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.991 3.009 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.274 1.274 27 C -0.113 4.113 28 C 0.115 3.885 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.343 0.657 45 H 0.072 0.928 46 H 0.104 0.896 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.078 0.922 50 H 0.051 0.949 51 H 0.084 0.916 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.711 21.540 -10.988 26.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.128 4.128 3 C -0.185 4.185 4 C -0.109 4.109 5 C -0.119 4.119 6 H 0.132 0.868 7 C -0.190 4.190 8 C 0.304 3.696 9 O -0.464 6.464 10 N -0.341 5.341 11 C -0.013 4.013 12 C -0.201 4.201 13 C -0.018 4.018 14 N -0.310 5.310 15 C -0.065 4.065 16 C 0.224 3.776 17 O -0.513 6.513 18 N -0.210 5.210 19 C -0.464 4.464 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.815 3.185 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.199 1.199 27 C -0.151 4.151 28 C -0.008 4.008 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.124 0.876 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.109 0.891 44 H 0.161 0.839 45 H 0.089 0.911 46 H 0.122 0.878 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.097 0.903 50 H 0.070 0.930 51 H 0.102 0.898 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.874 20.740 -10.496 26.102 hybrid contribution -1.166 -0.098 0.549 1.293 sum 10.708 20.641 -9.947 25.292 Atomic orbital electron populations 1.23882 0.95073 1.02704 1.01292 1.21621 0.95386 0.95193 1.00612 1.21081 1.00801 0.94130 1.02506 1.20552 1.00399 0.95774 0.94175 1.21357 1.00862 0.90710 0.98956 0.86800 1.21766 0.98359 0.98402 1.00503 1.21217 0.86720 0.87162 0.74547 1.90663 1.16158 1.87724 1.51884 1.48277 1.07969 1.05912 1.71922 1.21857 0.77621 1.02702 0.99145 1.22574 1.01565 0.96403 0.99574 1.21639 0.93872 0.91711 0.94621 1.60153 1.22426 1.41285 1.07159 1.21556 0.90873 0.98633 0.95415 1.20976 0.82142 0.84042 0.90487 1.90496 1.63454 1.66138 1.31173 1.41927 1.17515 1.46740 1.14832 1.19607 1.02431 1.29724 0.94635 0.90488 1.26015 0.96445 0.98447 1.00314 1.69658 1.16188 1.45057 1.25072 0.85015 0.77498 0.78265 0.77734 1.19687 1.19444 1.19885 1.21786 0.94641 1.00836 0.97884 1.21577 0.98122 0.82148 0.98910 0.88085 0.87513 0.91536 0.90921 0.90835 0.91750 0.90927 0.92937 0.93072 0.89470 0.87626 0.89149 0.89427 0.91865 0.89059 0.83850 0.91068 0.87812 0.76888 0.91283 0.90335 0.92981 0.89811 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.12 13.89 67.78 0.94 -1.18 16 2 C -0.13 -1.52 4.94 -16.49 -0.08 -1.60 16 3 C -0.13 -1.27 9.38 71.23 0.67 -0.60 16 4 C -0.07 -1.01 4.68 29.85 0.14 -0.87 16 5 C -0.10 -1.40 1.86 -11.54 -0.02 -1.42 16 6 H 0.11 1.16 6.37 -2.39 -0.02 1.15 16 7 C -0.13 -1.89 7.25 71.98 0.52 -1.36 16 8 C 0.51 10.70 6.81 87.66 0.60 11.30 16 9 O -0.58 -17.01 15.64 -3.05 -0.05 -17.06 16 10 N -0.61 -10.71 2.98 -819.72 -2.44 -13.15 16 11 C 0.11 1.33 6.08 86.22 0.52 1.86 16 12 C -0.16 -2.53 5.31 30.53 0.16 -2.37 16 13 C 0.09 1.86 2.43 44.94 0.11 1.97 16 14 N -0.68 -19.97 5.87 -495.42 -2.91 -22.88 16 15 C 0.07 2.14 5.96 85.56 0.51 2.65 16 16 C 0.44 20.23 7.82 87.66 0.69 20.91 16 17 O -0.63 -34.45 15.78 -3.05 -0.05 -34.50 16 18 N -0.57 -28.81 5.29 -306.98 -1.62 -30.43 16 19 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 20 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 21 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 22 N -0.92 -48.83 13.05 21.67 0.28 -48.55 16 23 Si 0.99 42.57 29.55 68.60 2.03 44.60 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 C -0.11 -2.35 5.69 30.67 0.17 -2.18 16 28 C 0.12 2.19 6.42 86.36 0.55 2.75 16 29 H 0.10 1.05 7.99 -2.91 -0.02 1.02 16 30 H 0.11 1.00 8.04 -2.91 -0.02 0.98 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.69 5.65 -2.39 -0.01 0.68 16 33 H 0.07 0.57 8.06 -2.38 -0.02 0.55 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.05 7.62 -2.39 -0.02 1.03 16 36 H 0.05 0.89 8.03 -2.39 -0.02 0.87 16 37 H 0.05 0.79 8.13 -2.39 -0.02 0.78 16 38 H 0.09 0.88 6.03 -2.39 -0.01 0.86 16 39 H 0.11 0.93 5.18 -2.38 -0.01 0.92 16 40 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.09 1.27 7.42 -2.39 -0.02 1.25 16 42 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.09 1.67 7.80 -2.39 -0.02 1.66 16 44 H 0.34 10.90 8.18 -89.69 -0.73 10.16 16 45 H 0.07 1.89 7.41 -2.39 -0.02 1.87 16 46 H 0.10 2.96 8.05 -2.39 -0.02 2.94 16 47 H 0.40 18.78 7.90 -92.71 -0.73 18.05 16 48 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 49 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 50 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 52 H 0.08 1.74 7.03 -2.39 -0.02 1.72 16 Total: -1.00 -71.66 410.55 1.47 -70.19 By element: Atomic # 1 Polarization: 40.65 SS G_CDS: -0.54 Total: 40.11 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 6.77 Total: 11.66 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -6.69 Total: -115.00 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -0.10 Total: -51.56 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -71.66 1.47 -70.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202108379.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.923 kcal (2) G-P(sol) polarization free energy of solvation -71.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds