Wall clock time and date at job start Tue Mar 31 2020 21:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50697 * 120.00002 * 2 1 4 4 C 1.50697 * 119.99648 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.47606 * 94.99757 * 4 2 1 6 6 H 1.09003 * 109.46620 * 54.99383 * 5 4 2 7 7 C 1.52994 * 109.46981 * 294.99904 * 5 4 2 8 8 C 1.50695 * 109.47502 * 174.99592 * 5 4 2 9 9 O 1.21281 * 119.99846 * 23.03274 * 8 5 4 10 10 N 1.34772 * 120.00212 * 203.03370 * 8 5 4 11 11 C 1.46924 * 120.62939 * 4.66286 * 10 8 5 12 12 C 1.52760 * 109.00752 * 233.58566 * 11 10 8 13 13 C 1.53045 * 109.38715 * 305.58772 * 12 11 10 14 14 N 1.46894 * 109.46186 * 181.26359 * 13 12 11 15 15 C 1.46893 * 111.00438 * 84.93125 * 14 13 12 16 16 C 1.50700 * 109.47593 * 179.97438 * 15 14 13 17 17 O 1.21296 * 119.99651 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00305 * 179.97438 * 16 15 14 19 19 C 1.37100 * 119.99908 * 179.97438 * 18 16 15 20 20 H 1.07994 * 119.99903 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99875 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99670 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99977 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46932 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46908 * 120.00238 * 23 21 19 26 26 H 1.48501 * 109.47244 * 240.00160 * 23 21 19 27 27 C 1.53038 * 109.53369 * 61.23861 * 13 12 11 28 28 C 1.46930 * 120.63241 * 184.94622 * 10 8 5 29 29 H 1.07994 * 119.99792 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.99790 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46850 * 270.00118 * 3 2 1 32 32 H 1.08998 * 109.46946 * 150.00561 * 3 2 1 33 33 H 1.08992 * 109.47164 * 30.00381 * 3 2 1 34 34 H 1.09005 * 109.46871 * 215.00036 * 4 2 1 35 35 H 1.09004 * 109.47430 * 334.99099 * 4 2 1 36 36 H 1.08998 * 109.47229 * 185.77460 * 7 5 4 37 37 H 1.09001 * 109.47223 * 305.77516 * 7 5 4 38 38 H 1.09008 * 109.47196 * 65.77595 * 7 5 4 39 39 H 1.08994 * 109.59006 * 353.41887 * 11 10 8 40 40 H 1.09000 * 109.58470 * 113.84719 * 11 10 8 41 41 H 1.09004 * 109.56747 * 185.55084 * 12 11 10 42 42 H 1.08996 * 109.36223 * 65.50081 * 12 11 10 43 43 H 1.08999 * 109.45902 * 301.21983 * 13 12 11 44 44 H 1.00903 * 110.99947 * 320.97393 * 14 13 12 45 45 H 1.09002 * 109.47412 * 300.00353 * 15 14 13 46 46 H 1.09000 * 109.46815 * 59.99682 * 15 14 13 47 47 H 0.96998 * 119.99692 * 0.02562 * 18 16 15 48 48 H 0.97003 * 119.99756 * 179.97438 * 22 21 19 49 49 H 1.09003 * 109.49898 * 178.68735 * 27 13 12 50 50 H 1.09005 * 109.52423 * 58.60957 * 27 13 12 51 51 H 1.08993 * 109.58482 * 246.15669 * 28 10 8 52 52 H 1.09004 * 109.58316 * 6.43493 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4273 -1.6834 -1.4377 6 1 2.9769 -0.8640 -1.9010 7 6 1.1487 -1.9539 -2.2331 8 6 3.2852 -2.9223 -1.4292 9 8 3.2440 -3.6820 -0.4847 10 7 4.0983 -3.1862 -2.4712 11 6 4.2361 -2.2263 -3.5750 12 6 3.9553 -2.9422 -4.8949 13 6 4.8636 -4.1685 -5.0109 14 7 4.6164 -4.8411 -6.2932 15 6 5.4074 -4.2298 -7.3695 16 6 5.1285 -4.9450 -8.6663 17 8 4.3479 -5.8731 -8.6913 18 7 5.7464 -4.5534 -9.7983 19 6 5.4930 -5.2045 -10.9779 20 1 4.7981 -6.0308 -11.0002 21 6 6.1305 -4.8011 -12.1449 22 7 6.9765 -3.7959 -12.1176 23 14 5.7848 -5.6877 -13.7523 24 1 4.8014 -6.7752 -13.5162 25 1 5.2310 -4.7258 -14.7389 26 1 7.0466 -6.2665 -14.2797 27 6 4.5671 -5.1354 -3.8623 28 6 4.8591 -4.4419 -2.5280 29 1 -0.5399 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 2.2452 1.6197 -1.0277 32 1 3.0160 1.1747 0.5137 33 1 1.4746 2.0647 0.5139 34 1 2.9742 -1.1991 0.5889 35 1 1.4386 -2.0857 0.4335 36 1 1.4091 -2.3221 -3.2255 37 1 0.5492 -2.7017 -1.7140 38 1 0.5768 -1.0307 -2.3267 39 1 3.5226 -1.4129 -3.4431 40 1 5.2502 -1.8270 -3.5875 41 1 4.1506 -2.2649 -5.7263 42 1 2.9125 -3.2582 -4.9199 43 1 5.9061 -3.8542 -4.9610 44 1 3.6332 -4.8371 -6.5199 45 1 5.1358 -3.1788 -7.4681 46 1 6.4680 -4.3101 -7.1314 47 1 6.3709 -3.8115 -9.7781 48 1 7.4218 -3.5146 -12.9321 49 1 5.1979 -6.0191 -3.9586 50 1 3.5185 -5.4314 -3.8968 51 1 5.9250 -4.2270 -2.4534 52 1 4.5582 -5.0889 -1.7039 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202108413.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:44 Heat of formation + Delta-G solvation = -68.530563 kcal Electronic energy + Delta-G solvation = -29289.679230 eV Core-core repulsion = 25288.775404 eV Total energy + Delta-G solvation = -4000.903826 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.73648 -38.70661 -37.88580 -36.98916 -35.13989 -33.89781 -33.33320 -31.40364 -31.21026 -30.92902 -27.68516 -27.43690 -26.94645 -25.01585 -23.96863 -23.49778 -22.45609 -20.80439 -19.42222 -18.92978 -18.77454 -17.89643 -17.50377 -16.29334 -16.04011 -15.71693 -15.27310 -15.11971 -14.95968 -14.81192 -14.59081 -14.29403 -14.02752 -13.98603 -13.88880 -13.64491 -13.50443 -13.27833 -12.89166 -12.65430 -12.46840 -12.41091 -12.24706 -12.06432 -11.91006 -11.68611 -11.60329 -11.50958 -11.44975 -11.29160 -11.20629 -11.09744 -10.93909 -10.65690 -10.36036 -10.24415 -9.86009 -9.54228 -9.37703 -8.91731 -8.48848 -8.06938 -7.97937 -6.44137 -3.84858 1.82452 2.38546 2.74858 3.14685 3.25473 3.32797 3.88161 4.04020 4.08533 4.26822 4.39918 4.45523 4.55000 4.61244 4.75036 4.78091 4.79131 4.89234 5.04427 5.08143 5.11594 5.14545 5.22251 5.25294 5.26802 5.34729 5.39721 5.43890 5.47169 5.50403 5.53801 5.56393 5.58822 5.68409 5.72397 5.79858 5.81917 5.85269 5.95368 5.99376 6.13969 6.26267 6.27075 6.34493 6.50166 7.14071 7.20293 7.53393 7.62437 7.93596 8.04415 8.58872 9.15867 9.51971 10.03376 10.73645 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021334 B = 0.001846 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.130640 B =15166.821096 C =15761.124521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.067 4.067 5 C -0.105 4.105 6 H 0.093 0.907 7 C -0.143 4.143 8 C 0.521 3.479 9 O -0.543 6.543 10 N -0.610 5.610 11 C 0.109 3.891 12 C -0.169 4.169 13 C 0.089 3.911 14 N -0.663 5.663 15 C 0.051 3.949 16 C 0.440 3.560 17 O -0.583 6.583 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C -0.120 4.120 28 C 0.111 3.889 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.350 0.650 45 H 0.043 0.957 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.085 0.915 50 H 0.066 0.934 51 H 0.067 0.933 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.661 11.624 22.756 26.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.124 4.124 3 C -0.178 4.178 4 C -0.105 4.105 5 C -0.126 4.126 6 H 0.111 0.889 7 C -0.201 4.201 8 C 0.309 3.691 9 O -0.420 6.420 10 N -0.343 5.343 11 C -0.015 4.015 12 C -0.209 4.209 13 C -0.022 4.022 14 N -0.293 5.293 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.467 6.467 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.159 4.159 28 C -0.011 4.011 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.170 0.830 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.104 0.896 50 H 0.085 0.915 51 H 0.086 0.914 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.631 10.147 23.174 26.153 hybrid contribution -0.107 1.037 -1.221 1.605 sum -6.737 11.184 21.954 25.543 Atomic orbital electron populations 1.23739 0.95226 1.01907 1.02151 1.21717 0.95439 0.95481 0.99795 1.20885 1.00209 0.94525 1.02158 1.20532 1.00721 0.94625 0.94639 1.21264 0.97107 0.95944 0.98294 0.88858 1.21804 0.95734 1.02864 0.99663 1.20643 0.79356 0.87442 0.81671 1.90683 1.66923 1.50211 1.34175 1.48161 1.44737 1.20244 1.21197 1.21687 1.02371 0.91525 0.85901 1.22672 1.01613 0.99361 0.97230 1.21580 0.98946 0.91359 0.90306 1.60170 1.13421 1.55179 1.00579 1.21703 0.99075 0.95930 0.91467 1.19828 0.85618 0.87271 0.84747 1.90530 1.38929 1.31375 1.85881 1.41873 1.39730 1.31646 1.06824 1.19757 1.24355 1.14353 0.84367 0.87866 1.25267 0.96220 0.96753 0.99757 1.69619 1.28295 1.26890 1.29521 0.85800 0.78306 0.79200 0.81041 1.19208 1.20778 1.20723 1.21889 1.03010 0.98757 0.92272 1.21665 0.95471 0.85145 0.98837 0.88514 0.88374 0.91410 0.91839 0.91849 0.90939 0.90218 0.92003 0.91893 0.90982 0.89515 0.91027 0.90383 0.91083 0.90333 0.83031 0.93920 0.89648 0.77487 0.91925 0.89629 0.91475 0.91438 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.24 12.66 29.01 0.37 -0.87 16 2 C -0.12 -0.83 4.80 -101.07 -0.48 -1.32 16 3 C -0.12 -0.66 10.03 36.00 0.36 -0.30 16 4 C -0.07 -0.54 4.28 -27.88 -0.12 -0.66 16 5 C -0.10 -0.82 1.86 -91.78 -0.17 -0.99 16 6 H 0.09 0.59 6.39 -51.93 -0.33 0.26 16 7 C -0.14 -1.05 8.45 37.15 0.31 -0.73 16 8 C 0.52 5.58 6.82 -10.99 -0.07 5.51 16 9 O -0.54 -7.75 15.60 5.56 0.09 -7.66 16 10 N -0.61 -5.80 2.98 -173.04 -0.52 -6.32 16 11 C 0.11 0.82 6.04 -3.93 -0.02 0.79 16 12 C -0.17 -1.53 5.32 -26.83 -0.14 -1.67 16 13 C 0.09 0.99 2.43 -67.67 -0.16 0.82 16 14 N -0.66 -10.09 5.87 -107.96 -0.63 -10.72 16 15 C 0.05 0.85 5.96 -4.98 -0.03 0.82 16 16 C 0.44 10.19 7.82 -10.99 -0.09 10.10 16 17 O -0.58 -15.70 15.78 5.54 0.09 -15.62 16 18 N -0.56 -14.08 5.29 -10.96 -0.06 -14.14 16 19 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 23 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 27 C -0.12 -1.29 5.69 -26.61 -0.15 -1.45 16 28 C 0.11 1.10 6.42 -3.71 -0.02 1.08 16 29 H 0.10 0.53 8.04 -52.49 -0.42 0.11 16 30 H 0.10 0.63 7.99 -52.49 -0.42 0.21 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.06 0.31 8.06 -51.93 -0.42 -0.11 16 34 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.08 0.74 7.89 -51.93 -0.41 0.33 16 36 H 0.06 0.46 7.74 -51.93 -0.40 0.06 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.46 6.89 -51.92 -0.36 0.10 16 39 H 0.09 0.52 5.18 -51.93 -0.27 0.25 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.70 7.42 -51.93 -0.39 0.32 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.84 7.80 -51.93 -0.40 0.44 16 44 H 0.35 5.61 8.18 -39.29 -0.32 5.29 16 45 H 0.04 0.63 7.41 -51.93 -0.38 0.24 16 46 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 47 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 48 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 49 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 52 H 0.09 1.03 7.03 -51.93 -0.37 0.67 16 LS Contribution 413.81 15.07 6.24 6.24 Total: -1.00 -32.55 413.81 -8.71 -41.26 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -8.94 Total: 11.44 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -0.67 Total: 3.19 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.48 Total: -54.74 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: 0.17 Total: -23.28 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.55 -8.71 -41.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202108413.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.269 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds