Wall clock time and date at job start Tue Mar 31 2020 20:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.64660 * 2 1 4 4 C 1.54934 * 110.72725 * 236.64795 * 2 1 3 5 5 N 1.48531 * 103.22823 * 204.22988 * 4 2 1 6 6 C 1.46899 * 111.00323 * 159.72061 * 5 4 2 7 7 C 1.50696 * 109.46928 * 59.24122 * 6 5 4 8 8 O 1.21296 * 120.00012 * 6.14114 * 7 6 5 9 9 N 1.34774 * 120.00343 * 186.13389 * 7 6 5 10 10 C 1.37093 * 120.00364 * 179.72250 * 9 7 6 11 11 H 1.08001 * 120.00200 * 0.02562 * 10 9 7 12 12 C 1.38959 * 120.00094 * 180.02562 * 10 9 7 13 13 N 1.31413 * 119.99761 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99982 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.46873 * 359.97438 * 14 12 10 16 16 H 1.48491 * 109.47020 * 119.99957 * 14 12 10 17 17 H 1.48500 * 109.46830 * 240.00160 * 14 12 10 18 18 C 1.47900 * 105.82194 * 39.20592 * 5 4 2 19 19 C 1.53999 * 107.05713 * 334.67378 * 18 5 4 20 20 H 1.09001 * 110.31160 * 120.24123 * 19 18 5 21 21 N 1.46507 * 110.30756 * 242.30613 * 19 18 5 22 22 C 1.34773 * 119.99811 * 273.54856 * 21 19 18 23 23 O 1.21287 * 120.00281 * 359.97438 * 22 21 19 24 24 C 1.50705 * 119.99928 * 180.02562 * 22 21 19 25 25 C 1.53784 * 113.61046 * 279.13366 * 24 22 21 26 26 C 1.53958 * 87.01545 * 220.04979 * 25 24 22 27 27 C 1.53009 * 113.53217 * 270.80902 * 26 25 24 28 28 C 1.53001 * 113.66545 * 139.93580 * 26 25 24 29 29 C 1.53771 * 87.11472 * 25.36324 * 26 25 24 30 30 H 1.08999 * 109.47991 * 296.85182 * 1 2 3 31 31 H 1.09009 * 109.47045 * 56.85322 * 1 2 3 32 32 H 1.09006 * 109.47287 * 176.85023 * 1 2 3 33 33 H 1.08998 * 110.66561 * 85.79654 * 4 2 1 34 34 H 1.08997 * 110.66667 * 322.66292 * 4 2 1 35 35 H 1.08994 * 109.46984 * 299.24521 * 6 5 4 36 36 H 1.09002 * 109.47110 * 179.23970 * 6 5 4 37 37 H 0.96999 * 119.99594 * 0.02562 * 9 7 6 38 38 H 0.96995 * 119.99637 * 180.02562 * 13 12 10 39 39 H 1.09002 * 109.91625 * 94.02337 * 18 5 4 40 40 H 1.09000 * 109.92324 * 215.11878 * 18 5 4 41 41 H 0.96997 * 119.99618 * 93.54421 * 21 19 18 42 42 H 1.09000 * 112.85179 * 50.32436 * 24 22 21 43 43 H 1.08999 * 113.61246 * 334.56330 * 25 24 22 44 44 H 1.08996 * 113.61518 * 105.47277 * 25 24 22 45 45 H 1.09007 * 109.46635 * 157.49853 * 27 26 25 46 46 H 1.08996 * 109.46943 * 277.49734 * 27 26 25 47 47 H 1.08999 * 109.47056 * 37.49833 * 27 26 25 48 48 H 1.08997 * 109.47161 * 322.43164 * 28 26 25 49 49 H 1.08999 * 109.47281 * 82.44072 * 28 26 25 50 50 H 1.09006 * 109.46867 * 202.43589 * 28 26 25 51 51 H 1.09006 * 113.61707 * 220.09652 * 29 26 25 52 52 H 1.08995 * 113.61587 * 89.19141 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0783 -0.7967 -1.2104 5 7 3.4318 -1.2105 -0.7599 6 6 3.9212 -2.3525 -1.5437 7 6 3.9751 -1.9749 -3.0016 8 8 3.7464 -0.8332 -3.3412 9 7 4.2775 -2.9058 -3.9281 10 6 4.3209 -2.5636 -5.2549 11 1 4.1132 -1.5480 -5.5578 12 6 4.6322 -3.5235 -6.2102 13 7 4.8844 -4.7595 -5.8418 14 14 4.6920 -3.0571 -8.0181 15 1 4.3710 -1.6150 -8.1680 16 1 6.0523 -3.3201 -8.5523 17 1 3.6995 -3.8655 -8.7709 18 6 3.2893 -1.5697 0.6677 19 6 2.0769 -0.7906 1.2107 20 1 1.3213 -1.4805 1.5866 21 7 2.4969 0.1291 2.2709 22 6 2.5785 -0.3033 3.5448 23 8 2.3039 -1.4537 3.8135 24 6 3.0100 0.6430 4.6355 25 6 4.5340 0.8294 4.7220 26 6 4.3691 0.8067 6.2525 27 6 4.1136 2.1877 6.8599 28 6 5.4712 0.0318 6.9776 29 6 3.0879 -0.0125 6.0245 30 1 -0.3635 0.4641 0.9168 31 1 -0.3633 0.5620 -0.8605 32 1 -0.3634 -1.0262 -0.0565 33 1 2.1445 -0.1594 -2.0922 34 1 1.4561 -1.6689 -1.4106 35 1 3.2472 -3.1989 -1.4123 36 1 4.9195 -2.6264 -1.2022 37 1 4.4601 -3.8189 -3.6565 38 1 5.1020 -5.4294 -6.5086 39 1 3.1160 -2.6414 0.7655 40 1 4.1900 -1.2881 1.2132 41 1 2.7162 1.0492 2.0560 42 1 2.4552 1.5812 4.6259 43 1 5.1001 -0.0162 4.3313 44 1 4.8795 1.7873 4.3332 45 1 3.6236 2.0742 7.8270 46 1 5.0625 2.7076 6.9921 47 1 3.4728 2.7649 6.1934 48 1 5.7456 -0.8446 6.3905 49 1 6.3437 0.6729 7.1033 50 1 5.1092 -0.2850 7.9558 51 1 2.2675 0.2668 6.6856 52 1 3.2579 -1.0886 5.9906 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206920569.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:11 Heat of formation + Delta-G solvation = -81.548065 kcal Electronic energy + Delta-G solvation = -29571.952373 eV Core-core repulsion = 25570.484066 eV Total energy + Delta-G solvation = -4001.468307 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.70910 -40.79860 -39.72354 -38.70592 -36.08391 -35.38748 -33.78146 -33.23366 -31.88124 -30.16859 -28.50985 -28.23964 -26.98087 -26.65364 -25.89379 -24.48414 -22.50246 -21.50751 -21.05612 -20.74199 -19.88396 -19.15578 -18.13489 -17.99284 -17.51144 -16.78823 -16.38320 -16.28876 -16.19785 -15.83202 -15.64794 -15.33184 -15.14032 -14.87598 -14.69352 -14.19676 -14.09360 -13.98972 -13.78682 -13.63288 -13.60227 -13.41520 -13.36332 -13.04766 -12.91252 -12.71542 -12.61279 -12.44248 -12.41511 -12.34257 -12.11747 -11.99827 -11.83338 -11.76727 -11.69056 -11.46372 -11.26180 -10.99446 -10.61030 -10.33878 -10.07928 -10.02392 -9.40260 -8.47831 -5.96625 1.35774 1.41134 1.55553 1.62678 2.01775 2.18324 2.27761 2.76946 3.18605 3.29114 3.46303 3.48484 3.59917 3.63725 3.73887 3.78725 4.01999 4.12410 4.18583 4.22981 4.30687 4.39027 4.40630 4.49198 4.51127 4.54805 4.65646 4.72976 4.77792 4.79352 4.81826 4.89558 4.91100 4.91922 4.97555 5.04052 5.07011 5.20463 5.20807 5.24873 5.27209 5.28537 5.40190 5.48341 5.53417 5.64179 5.79954 5.88314 6.04580 6.58208 6.59179 7.11075 7.27919 7.53599 8.08583 8.69936 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021293 B = 0.002009 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.669565 B =13936.930225 C =14532.798869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.086 4.086 3 H 0.099 0.901 4 C 0.044 3.956 5 N -0.504 5.504 6 C 0.046 3.954 7 C 0.443 3.557 8 O -0.611 6.611 9 N -0.574 5.574 10 C -0.330 4.330 11 H 0.081 0.919 12 C -0.016 4.016 13 N -0.922 5.922 14 Si 0.995 3.005 15 H -0.271 1.271 16 H -0.271 1.271 17 H -0.271 1.271 18 C 0.029 3.971 19 C 0.149 3.851 20 H 0.086 0.914 21 N -0.705 5.705 22 C 0.520 3.480 23 O -0.585 6.585 24 C -0.130 4.130 25 C -0.113 4.113 26 C -0.084 4.084 27 C -0.127 4.127 28 C -0.137 4.137 29 C -0.113 4.113 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.035 0.965 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.395 0.605 38 H 0.277 0.723 39 H 0.046 0.954 40 H 0.081 0.919 41 H 0.415 0.585 42 H 0.140 0.860 43 H 0.069 0.931 44 H 0.093 0.907 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.045 0.955 49 H 0.064 0.936 50 H 0.059 0.941 51 H 0.078 0.922 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.361 12.071 25.076 28.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.106 4.106 3 H 0.117 0.883 4 C -0.084 4.084 5 N -0.229 5.229 6 C -0.085 4.085 7 C 0.230 3.770 8 O -0.496 6.496 9 N -0.211 5.211 10 C -0.460 4.460 11 H 0.099 0.901 12 C -0.215 4.215 13 N -0.563 5.563 14 Si 0.818 3.182 15 H -0.196 1.196 16 H -0.197 1.197 17 H -0.197 1.197 18 C -0.100 4.100 19 C 0.042 3.958 20 H 0.104 0.896 21 N -0.357 5.357 22 C 0.308 3.692 23 O -0.465 6.465 24 C -0.151 4.151 25 C -0.151 4.151 26 C -0.084 4.084 27 C -0.184 4.184 28 C -0.195 4.195 29 C -0.151 4.151 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.124 0.876 37 H 0.228 0.772 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.252 0.748 42 H 0.157 0.843 43 H 0.088 0.912 44 H 0.112 0.888 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.064 0.936 49 H 0.083 0.917 50 H 0.078 0.922 51 H 0.097 0.903 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.268 12.260 24.852 28.038 hybrid contribution -0.122 -1.281 -1.154 1.729 sum -4.390 10.979 23.698 26.484 Atomic orbital electron populations 1.21743 0.92560 1.02278 1.02954 1.22293 0.96907 0.99813 0.91549 0.88289 1.23296 0.87764 0.98635 0.98746 1.64526 1.24638 1.32069 1.01639 1.21974 1.02804 0.93028 0.90724 1.20560 0.82554 0.85687 0.88175 1.90460 1.55341 1.21265 1.82577 1.41944 1.61764 1.11278 1.06126 1.19710 1.46421 0.97041 0.82798 0.90061 1.26087 0.96198 0.94693 1.04530 1.69689 1.47420 1.02549 1.36624 0.84841 0.78274 0.78312 0.76735 1.19597 1.19673 1.19657 1.23341 0.99400 0.98649 0.88621 1.21702 0.94830 0.91825 0.87404 0.89586 1.46022 1.68347 1.15030 1.06256 1.21134 0.75560 0.88549 0.83929 1.90680 1.51077 1.21250 1.83447 1.22833 0.99407 0.99631 0.93229 1.23039 0.92508 1.03035 0.96473 1.21827 0.95239 0.96766 0.94552 1.21615 1.02361 0.93487 1.00903 1.21733 0.97979 0.99528 1.00215 1.22934 0.98375 0.99461 0.94292 0.90804 0.91557 0.92891 0.90504 0.94718 0.91819 0.87629 0.77159 0.91330 0.93542 0.90103 0.74765 0.84274 0.91246 0.88827 0.91868 0.91647 0.91424 0.93616 0.91688 0.92154 0.90296 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.16 71.98 0.66 -1.95 16 2 C -0.09 -1.96 3.37 -9.59 -0.03 -2.00 16 3 H 0.10 2.06 7.74 -2.39 -0.02 2.04 16 4 C 0.04 1.41 5.03 86.65 0.44 1.84 16 5 N -0.50 -16.96 5.11 -887.59 -4.53 -21.50 16 6 C 0.05 1.71 5.30 85.56 0.45 2.16 16 7 C 0.44 21.43 7.41 87.66 0.65 22.08 16 8 O -0.61 -33.42 13.87 -3.08 -0.04 -33.46 16 9 N -0.57 -29.94 5.29 -306.98 -1.62 -31.56 16 10 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 11 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 12 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 13 N -0.92 -50.34 13.05 21.67 0.28 -50.06 16 14 Si 0.99 43.13 29.55 68.60 2.03 45.16 16 15 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 16 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 18 C 0.03 0.80 6.49 86.45 0.56 1.36 16 19 C 0.15 3.44 2.87 45.87 0.13 3.57 16 20 H 0.09 2.20 7.35 -2.39 -0.02 2.18 16 21 N -0.71 -12.96 5.03 -438.34 -2.21 -15.17 16 22 C 0.52 10.88 7.35 87.66 0.64 11.52 16 23 O -0.58 -17.47 15.61 -3.05 -0.05 -17.52 16 24 C -0.13 -1.78 3.79 -11.01 -0.04 -1.82 16 25 C -0.11 -1.42 6.76 31.18 0.21 -1.21 16 26 C -0.08 -0.96 1.39 -51.59 -0.07 -1.03 16 27 C -0.13 -0.98 9.07 71.99 0.65 -0.32 16 28 C -0.14 -1.65 9.20 71.98 0.66 -0.99 16 29 C -0.11 -1.69 6.55 31.12 0.20 -1.49 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.05 1.05 8.10 -2.38 -0.02 1.03 16 33 H 0.08 3.03 6.43 -2.39 -0.02 3.02 16 34 H 0.03 1.15 7.88 -2.39 -0.02 1.13 16 35 H 0.06 2.16 7.98 -2.39 -0.02 2.14 16 36 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 37 H 0.39 19.77 7.90 -92.71 -0.73 19.04 16 38 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 39 H 0.05 1.31 7.68 -2.39 -0.02 1.29 16 40 H 0.08 2.22 7.93 -2.39 -0.02 2.20 16 41 H 0.42 5.48 8.34 -92.71 -0.77 4.71 16 42 H 0.14 1.15 7.66 -2.39 -0.02 1.13 16 43 H 0.07 1.13 7.92 -2.39 -0.02 1.11 16 44 H 0.09 0.87 8.10 -2.39 -0.02 0.85 16 45 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 46 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.07 0.41 7.34 -2.39 -0.02 0.39 16 48 H 0.04 0.66 7.95 -2.39 -0.02 0.64 16 49 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 50 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 51 H 0.08 1.03 8.10 -2.38 -0.02 1.01 16 52 H 0.07 1.43 7.41 -2.39 -0.02 1.41 16 Total: -1.00 -71.06 412.03 -0.33 -71.39 By element: Atomic # 1 Polarization: 39.97 SS G_CDS: -0.59 Total: 39.38 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 6.40 Total: 13.33 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -8.08 Total: -118.28 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -0.09 Total: -50.98 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -71.06 -0.33 -71.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206920569.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.160 kcal (2) G-P(sol) polarization free energy of solvation -71.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds