Wall clock time and date at job start Tue Mar 31 2020 20:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47184 * 2 1 4 4 C 1.52997 * 109.47088 * 119.99895 * 2 1 3 5 5 C 1.50697 * 109.47160 * 185.00365 * 4 2 1 6 6 O 1.21276 * 120.00275 * 359.97438 * 5 4 2 7 7 N 1.34781 * 120.00034 * 179.97438 * 5 4 2 8 8 C 1.46498 * 119.99967 * 179.97438 * 7 5 4 9 9 H 1.08994 * 110.64384 * 31.86081 * 8 7 5 10 10 C 1.54339 * 110.84969 * 268.68921 * 8 7 5 11 11 N 1.47021 * 107.26633 * 219.67238 * 10 8 7 12 12 C 1.36931 * 125.64962 * 178.85047 * 11 10 8 13 13 H 1.08002 * 120.00438 * 179.69777 * 12 11 10 14 14 C 1.38817 * 119.99680 * 359.41735 * 12 11 10 15 15 N 1.31614 * 119.99888 * 0.27479 * 14 12 11 16 16 Si 1.86803 * 119.99862 * 180.27671 * 14 12 11 17 17 H 1.48496 * 109.47141 * 59.99751 * 16 14 12 18 18 H 1.48490 * 109.47071 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46993 * 300.00028 * 16 14 12 20 20 C 1.47426 * 108.70417 * 358.58904 * 11 10 8 21 21 C 1.54919 * 104.83230 * 24.35268 * 20 11 10 22 22 H 1.08998 * 111.00144 * 81.06524 * 21 20 11 23 23 C 1.52995 * 111.00455 * 204.91772 * 21 20 11 24 24 N 1.46497 * 109.47403 * 239.99915 * 2 1 3 25 25 C 1.45748 * 117.95139 * 120.00054 * 24 2 1 26 26 C 1.52921 * 110.49121 * 160.92405 * 25 24 2 27 27 C 1.53349 * 108.67180 * 50.75316 * 26 25 24 28 28 C 1.53063 * 108.42432 * 292.47013 * 27 26 25 29 29 C 1.33357 * 117.94476 * 299.73814 * 24 2 1 30 30 O 1.21288 * 118.24530 * 2.22309 * 29 24 2 31 31 H 1.09001 * 109.47370 * 300.00266 * 1 2 3 32 32 H 1.09001 * 109.47173 * 60.00739 * 1 2 3 33 33 H 1.08998 * 109.47184 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47381 * 64.99767 * 4 2 1 35 35 H 1.09011 * 109.47195 * 304.99866 * 4 2 1 36 36 H 0.97003 * 119.99850 * 359.97438 * 7 5 4 37 37 H 1.09000 * 109.98868 * 100.19786 * 10 8 7 38 38 H 1.09001 * 109.77953 * 339.02970 * 10 8 7 39 39 H 0.97005 * 119.99715 * 179.97438 * 15 14 12 40 40 H 1.09003 * 110.37118 * 143.18886 * 20 11 10 41 41 H 1.09001 * 110.36564 * 265.51518 * 20 11 10 42 42 H 1.08996 * 109.47157 * 58.54463 * 23 21 20 43 43 H 1.09002 * 109.47021 * 178.54810 * 23 21 20 44 44 H 1.09005 * 109.47154 * 298.54608 * 23 21 20 45 45 H 1.09007 * 109.30039 * 281.24131 * 25 24 2 46 46 H 1.08997 * 109.30356 * 40.61014 * 25 24 2 47 47 H 1.08997 * 109.60017 * 170.50498 * 26 25 24 48 48 H 1.08990 * 109.60534 * 290.83404 * 26 25 24 49 49 H 1.09004 * 109.67345 * 52.20644 * 27 26 25 50 50 H 1.09004 * 109.67259 * 172.69634 * 27 26 25 51 51 H 1.09004 * 109.40046 * 169.03463 * 28 27 26 52 52 H 1.09004 * 109.40278 * 288.76819 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5418 -0.6148 1.3128 6 8 4.1450 -0.0211 0.4442 7 7 4.2148 -1.1795 2.3349 8 6 5.6749 -1.0765 2.3964 9 1 6.0128 -0.1384 1.9563 10 6 6.3404 -2.2788 1.6938 11 7 7.5029 -2.6694 2.5047 12 6 8.3500 -3.7110 2.2356 13 1 9.1821 -3.9142 2.8934 14 6 8.1359 -4.5093 1.1203 15 7 7.1219 -4.2617 0.3187 16 14 9.2870 -5.9351 0.7574 17 1 9.2637 -6.8915 1.8931 18 1 8.8450 -6.6253 -0.4808 19 1 10.6678 -5.4214 0.5711 20 6 7.6093 -1.7499 3.6522 21 6 6.1732 -1.2072 3.8599 22 1 5.5640 -1.9180 4.4182 23 6 6.1972 0.1557 4.5548 24 7 2.0184 -0.6906 -1.1961 25 6 2.8530 0.0602 -2.1255 26 6 3.6414 -0.8916 -3.0260 27 6 2.6685 -1.9063 -3.6388 28 6 2.1402 -2.8068 -2.5195 29 6 1.6758 -1.9685 -1.3636 30 8 0.9460 -2.4797 -0.5407 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 1.7516 -1.7715 1.2057 35 1 1.6053 -0.2616 2.1370 36 1 3.7324 -1.6541 3.0299 37 1 6.6654 -1.9927 0.6935 38 1 5.6350 -3.1077 1.6337 39 1 6.9725 -4.8194 -0.4609 40 1 7.9436 -2.2875 4.5395 41 1 8.2938 -0.9335 3.4219 42 1 6.7758 0.8588 3.9558 43 1 5.1777 0.5253 4.6651 44 1 6.6552 0.0538 5.5387 45 1 2.2207 0.6990 -2.7424 46 1 3.5487 0.6828 -1.5629 47 1 4.1273 -0.3251 -3.8204 48 1 4.3944 -1.4137 -2.4359 49 1 1.8380 -1.3803 -4.1096 50 1 3.1886 -2.5106 -4.3822 51 1 1.3081 -3.4020 -2.8959 52 1 2.9361 -3.4715 -2.1834 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206971650.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:30 Heat of formation + Delta-G solvation = -74.367207 kcal Electronic energy + Delta-G solvation = -31738.130762 eV Core-core repulsion = 27736.973840 eV Total energy + Delta-G solvation = -4001.156922 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.92951 -40.67646 -39.09351 -37.38061 -36.23179 -35.54351 -34.25451 -32.34279 -32.14996 -30.46997 -30.02234 -28.47751 -27.31412 -25.42080 -25.27982 -24.22516 -22.69199 -21.87686 -21.53567 -20.90300 -19.31513 -18.90818 -18.06369 -17.86896 -17.48211 -16.88986 -16.74800 -16.59187 -16.00991 -15.65782 -15.42111 -15.18428 -14.98032 -14.74981 -14.71147 -14.41725 -14.17403 -14.12310 -13.93869 -13.73851 -13.36001 -13.14422 -13.08625 -12.98252 -12.87299 -12.73825 -12.58897 -12.55064 -12.38190 -12.25439 -12.02567 -11.87727 -11.86334 -11.82603 -11.72080 -11.65760 -11.47696 -10.77320 -10.66793 -10.35389 -9.92339 -9.59203 -8.94846 -7.86363 -5.24591 1.41960 1.45991 1.52184 1.64962 1.74982 2.12729 2.26958 2.48019 3.31457 3.55299 3.60034 3.73460 3.83650 3.86498 3.89109 3.91041 3.99926 4.05030 4.09646 4.27854 4.39700 4.49518 4.51286 4.55679 4.58836 4.61231 4.70693 4.71839 4.80705 4.83336 4.85893 4.92500 4.93153 4.98266 5.03672 5.05042 5.05928 5.16360 5.24369 5.31394 5.34995 5.38191 5.42420 5.47959 5.61576 5.70266 5.79903 6.14218 6.59832 6.64936 7.04603 7.21939 7.36869 7.73739 8.37671 9.22159 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010362 B = 0.004215 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.469159 B = 6641.099361 C = 8495.419353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.154 3.846 3 H 0.100 0.900 4 C -0.155 4.155 5 C 0.509 3.491 6 O -0.569 6.569 7 N -0.709 5.709 8 C 0.140 3.860 9 H 0.076 0.924 10 C 0.193 3.807 11 N -0.628 5.628 12 C -0.247 4.247 13 H 0.087 0.913 14 C -0.066 4.066 15 N -0.950 5.950 16 Si 0.979 3.021 17 H -0.274 1.274 18 H -0.296 1.296 19 H -0.275 1.275 20 C 0.132 3.868 21 C -0.096 4.096 22 H 0.086 0.914 23 C -0.126 4.126 24 N -0.584 5.584 25 C 0.116 3.884 26 C -0.135 4.135 27 C -0.110 4.110 28 C -0.139 4.139 29 C 0.509 3.491 30 O -0.587 6.587 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.132 0.868 36 H 0.408 0.592 37 H -0.012 1.012 38 H 0.010 0.990 39 H 0.244 0.756 40 H 0.053 0.947 41 H 0.026 0.974 42 H 0.050 0.950 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.102 0.898 48 H 0.034 0.966 49 H 0.090 0.910 50 H 0.085 0.915 51 H 0.110 0.890 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.735 12.264 -0.630 18.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.051 3.949 3 H 0.118 0.882 4 C -0.195 4.195 5 C 0.297 3.703 6 O -0.448 6.448 7 N -0.359 5.359 8 C 0.033 3.967 9 H 0.094 0.906 10 C 0.067 3.933 11 N -0.355 5.355 12 C -0.376 4.376 13 H 0.105 0.895 14 C -0.259 4.259 15 N -0.599 5.599 16 Si 0.807 3.193 17 H -0.199 1.199 18 H -0.223 1.223 19 H -0.201 1.201 20 C 0.007 3.993 21 C -0.116 4.116 22 H 0.105 0.895 23 C -0.184 4.184 24 N -0.314 5.314 25 C -0.006 4.006 26 C -0.173 4.173 27 C -0.148 4.148 28 C -0.179 4.179 29 C 0.298 3.702 30 O -0.470 6.470 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.150 0.850 36 H 0.244 0.756 37 H 0.007 0.993 38 H 0.028 0.972 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.105 0.895 46 H 0.094 0.906 47 H 0.120 0.880 48 H 0.053 0.947 49 H 0.109 0.891 50 H 0.104 0.896 51 H 0.128 0.872 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.620 12.294 -0.996 18.375 hybrid contribution 0.899 -1.527 -0.253 1.790 sum -12.721 10.767 -1.249 16.713 Atomic orbital electron populations 1.22129 0.92851 1.03479 1.03150 1.20964 0.95181 0.96102 0.82685 0.88197 1.22203 0.90096 1.05403 1.01783 1.21197 0.91049 0.77512 0.80560 1.90595 1.71320 1.44323 1.38580 1.45847 1.06616 1.56455 1.27031 1.21994 0.80040 0.97763 0.96859 0.90630 1.21055 0.88032 0.92679 0.91547 1.44730 1.30821 1.33156 1.26781 1.19481 1.06156 1.04475 1.07453 0.89512 1.25707 1.00145 1.02405 0.97679 1.70243 1.31940 1.41378 1.16303 0.85147 0.78244 0.78952 0.76981 1.19928 1.22259 1.20133 1.21849 0.95311 0.92096 0.90025 1.22542 0.96261 0.99217 0.93553 0.89534 1.21622 1.02612 0.93640 1.00481 1.47343 1.49542 1.10803 1.23728 1.21540 0.93561 0.94246 0.91248 1.21829 0.97901 0.98163 0.99397 1.21606 0.99549 0.97046 0.96589 1.21693 1.02998 0.98603 0.94606 1.20430 0.79812 0.82233 0.87683 1.90556 1.39222 1.71422 1.45822 0.89577 0.91819 0.91945 0.88392 0.84974 0.75608 0.99338 0.97171 0.94727 0.92886 0.95648 0.93047 0.91163 0.90586 0.89477 0.90613 0.87956 0.94714 0.89130 0.89639 0.87191 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 9.08 71.98 0.65 -2.49 16 2 C 0.15 3.70 2.20 44.99 0.10 3.79 16 3 H 0.10 2.20 7.60 -2.39 -0.02 2.19 16 4 C -0.15 -3.99 5.00 29.85 0.15 -3.84 16 5 C 0.51 16.87 7.69 87.66 0.67 17.55 16 6 O -0.57 -22.14 12.88 -3.02 -0.04 -22.18 16 7 N -0.71 -23.27 5.11 -436.90 -2.23 -25.50 16 8 C 0.14 5.44 2.78 46.19 0.13 5.57 16 9 H 0.08 3.14 7.42 -2.39 -0.02 3.12 16 10 C 0.19 10.22 5.13 86.73 0.45 10.66 16 11 N -0.63 -33.44 3.39 -691.93 -2.35 -35.79 16 12 C -0.25 -14.25 10.28 84.04 0.86 -13.39 16 13 H 0.09 4.71 7.83 -2.91 -0.02 4.69 16 14 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 15 N -0.95 -59.96 10.31 21.65 0.22 -59.74 16 16 Si 0.98 47.07 29.55 68.60 2.03 49.10 16 17 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 18 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 19 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 20 C 0.13 5.36 6.70 86.86 0.58 5.94 16 21 C -0.10 -3.10 3.27 -9.40 -0.03 -3.13 16 22 H 0.09 2.66 8.01 -2.39 -0.02 2.64 16 23 C -0.13 -2.97 9.29 71.98 0.67 -2.30 16 24 N -0.58 -15.91 2.24 -802.67 -1.79 -17.70 16 25 C 0.12 2.80 5.73 86.49 0.50 3.30 16 26 C -0.14 -3.33 6.02 30.68 0.18 -3.14 16 27 C -0.11 -2.30 6.03 30.73 0.19 -2.11 16 28 C -0.14 -3.74 6.03 29.70 0.18 -3.57 16 29 C 0.51 15.78 6.87 87.71 0.60 16.38 16 30 O -0.59 -20.86 12.46 -3.06 -0.04 -20.90 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.58 5.86 -2.39 -0.01 1.57 16 34 H 0.10 3.03 5.87 -2.39 -0.01 3.02 16 35 H 0.13 2.37 8.14 -2.38 -0.02 2.35 16 36 H 0.41 11.17 8.56 -92.71 -0.79 10.37 16 37 H -0.01 -0.73 7.53 -2.39 -0.02 -0.75 16 38 H 0.01 0.60 7.24 -2.39 -0.02 0.59 16 39 H 0.24 15.07 8.31 -92.70 -0.77 14.30 16 40 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.03 1.02 8.04 -2.39 -0.02 1.00 16 42 H 0.05 1.27 8.11 -2.39 -0.02 1.25 16 43 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 45 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 46 H 0.08 2.14 6.26 -2.39 -0.01 2.13 16 47 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.03 1.17 8.13 -2.39 -0.02 1.15 16 49 H 0.09 1.47 8.13 -2.38 -0.02 1.45 16 50 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 51 H 0.11 2.55 8.14 -2.38 -0.02 2.53 16 52 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 Total: -1.00 -78.34 397.31 2.25 -76.09 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: 0.11 Total: 30.83 kcal Atomic # 6 Polarization: 19.43 SS G_CDS: 6.35 Total: 25.78 kcal Atomic # 7 Polarization: -132.57 SS G_CDS: -6.15 Total: -138.72 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -0.08 Total: -43.08 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -78.34 2.25 -76.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206971650.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.722 kcal (2) G-P(sol) polarization free energy of solvation -78.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds