Wall clock time and date at job start Tue Mar 31 2020 20:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46728 * 2 1 4 4 N 1.46497 * 109.47470 * 120.00265 * 2 1 3 5 5 C 1.34778 * 119.99819 * 275.00109 * 4 2 1 6 6 O 1.21281 * 119.99857 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00291 * 180.02562 * 5 4 2 8 8 C 1.54269 * 110.02757 * 297.16551 * 7 5 4 9 9 C 1.54896 * 104.19638 * 217.10070 * 8 7 5 10 10 C 1.54892 * 102.74442 * 37.94225 * 9 8 7 11 11 C 1.53872 * 110.03840 * 180.02562 * 7 5 4 12 12 C 1.50698 * 109.47188 * 240.00188 * 2 1 3 13 13 O 1.21280 * 120.00482 * 239.99773 * 12 2 1 14 14 N 1.34779 * 119.99838 * 59.99827 * 12 2 1 15 15 C 1.46501 * 120.00089 * 180.02562 * 14 12 2 16 16 H 1.09004 * 110.89017 * 37.42144 * 15 14 12 17 17 C 1.54917 * 111.00303 * 273.54569 * 15 14 12 18 18 N 1.47421 * 104.83049 * 204.87799 * 17 15 14 19 19 C 1.36939 * 125.64596 * 204.09087 * 18 17 15 20 20 H 1.08001 * 119.99895 * 163.19156 * 19 18 17 21 21 C 1.38813 * 119.99784 * 343.18642 * 19 18 17 22 22 N 1.31614 * 120.00052 * 331.97054 * 21 19 18 23 23 Si 1.86800 * 119.99739 * 151.97353 * 21 19 18 24 24 H 1.48502 * 109.47010 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47390 * 299.99701 * 23 21 19 26 26 H 1.48497 * 109.47292 * 60.00057 * 23 21 19 27 27 C 1.47023 * 108.70467 * 24.35070 * 18 17 15 28 28 C 1.54328 * 107.26445 * 358.59038 * 27 18 17 29 29 H 1.08998 * 110.52030 * 96.45561 * 28 27 18 30 30 C 1.53008 * 110.84757 * 219.66919 * 28 27 18 31 31 H 1.09005 * 109.46728 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46836 * 299.99604 * 1 2 3 33 33 H 1.08999 * 109.47127 * 60.00038 * 1 2 3 34 34 H 0.96996 * 120.00611 * 95.00381 * 4 2 1 35 35 H 1.09005 * 110.01825 * 58.60669 * 7 5 4 36 36 H 1.09000 * 110.48991 * 335.78057 * 8 7 5 37 37 H 1.09003 * 110.48893 * 98.42724 * 8 7 5 38 38 H 1.09000 * 110.75633 * 279.63263 * 9 8 7 39 39 H 1.08996 * 110.75528 * 156.25341 * 9 8 7 40 40 H 1.09000 * 110.48581 * 203.37436 * 10 9 8 41 41 H 1.09006 * 110.48611 * 80.73606 * 10 9 8 42 42 H 1.08997 * 110.03332 * 238.57075 * 11 7 5 43 43 H 1.09007 * 110.02554 * 359.97438 * 11 7 5 44 44 H 0.96995 * 120.00137 * 359.97438 * 14 12 2 45 45 H 1.08998 * 110.36765 * 86.03394 * 17 15 14 46 46 H 1.09003 * 110.36420 * 323.71274 * 17 15 14 47 47 H 0.97004 * 120.00168 * 353.96490 * 22 21 19 48 48 H 1.09003 * 109.87723 * 118.13568 * 27 18 17 49 49 H 1.08998 * 109.88584 * 239.29324 * 27 18 17 50 50 H 1.08997 * 109.47048 * 173.69184 * 30 28 27 51 51 H 1.08995 * 109.47257 * 293.69439 * 30 28 27 52 52 H 1.09004 * 109.46914 * 53.69389 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8591 1.1586 2.4114 7 6 2.6501 -0.7285 3.5874 8 6 1.6700 -1.8507 3.9874 9 6 1.6767 -1.8268 5.5361 10 6 1.7595 -0.3131 5.8541 11 6 2.7063 0.2490 4.7744 12 6 2.0324 -0.7104 -1.2305 13 8 2.7297 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1946 -0.9407 -3.6508 16 1 2.1997 -2.0204 -3.5011 17 6 3.6005 -0.4292 -4.0528 18 7 3.7020 -0.7012 -5.4982 19 6 4.8667 -0.8615 -6.2002 20 1 4.8490 -1.3186 -7.1785 21 6 6.0702 -0.4364 -5.6544 22 7 6.0875 0.5607 -4.7956 23 14 7.6650 -1.2797 -6.1390 24 1 8.7992 -0.6428 -5.4226 25 1 7.5947 -2.7179 -5.7761 26 1 7.8692 -1.1482 -7.6040 27 6 2.3458 -0.7655 -6.0621 28 6 1.3550 -0.5561 -4.8975 29 1 1.0420 0.4867 -4.8451 30 6 0.1436 -1.4798 -5.0404 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.2492 -1.6317 1.1526 35 1 3.6396 -1.1453 3.3993 36 1 0.6709 -1.6383 3.6069 37 1 2.0226 -2.8143 3.6193 38 1 2.5484 -2.3517 5.9268 39 1 0.7564 -2.2551 5.9330 40 1 2.1772 -0.1544 6.8483 41 1 0.7748 0.1477 5.7750 42 1 3.7230 0.3063 5.1631 43 1 2.3702 1.2372 4.4605 44 1 1.1487 0.5386 -2.5435 45 1 4.3722 -0.9741 -3.5091 46 1 3.6841 0.6406 -3.8613 47 1 5.2740 1.0554 -4.6102 48 1 2.2166 0.0196 -6.8072 49 1 2.1793 -1.7420 -6.5170 50 1 -0.4842 -1.3954 -4.1534 51 1 -0.4308 -1.1922 -5.9209 52 1 0.4830 -2.5100 -5.1486 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207100858.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:20 Heat of formation + Delta-G solvation = -71.558541 kcal Electronic energy + Delta-G solvation = -30142.511660 eV Core-core repulsion = 26141.476531 eV Total energy + Delta-G solvation = -4001.035129 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.67240 -39.67525 -37.97243 -37.24362 -35.04942 -34.27148 -32.96539 -31.28974 -30.38511 -29.15475 -28.88337 -27.85588 -25.54840 -24.90922 -23.56090 -22.07801 -21.01564 -20.56138 -20.28444 -19.99624 -19.50763 -17.96668 -17.57200 -16.87807 -16.39251 -15.92825 -15.71301 -15.19876 -14.95990 -14.66860 -14.50895 -13.95913 -13.73447 -13.68767 -13.52061 -13.37825 -13.19492 -13.06560 -12.71677 -12.56717 -12.51809 -11.98832 -11.84777 -11.77216 -11.62105 -11.56432 -11.41308 -11.37780 -11.08160 -10.89679 -10.77486 -10.74249 -10.66209 -10.48116 -10.12960 -9.97656 -9.92879 -9.78876 -9.58516 -9.27597 -8.76565 -8.39901 -6.95131 -6.09559 -3.14709 2.45501 2.66445 2.77214 3.38037 3.51265 3.57001 3.73970 4.17551 4.28843 4.42402 4.55536 4.61734 4.82070 4.86794 4.94599 4.99093 5.08207 5.15074 5.15362 5.19202 5.22783 5.31388 5.32961 5.36619 5.37528 5.53017 5.55575 5.61841 5.62364 5.74912 5.79585 5.81407 5.85930 5.87846 5.93617 6.01031 6.01413 6.07251 6.17958 6.24990 6.26064 6.51061 6.57079 6.76551 6.94167 7.05085 7.35429 7.57591 7.79314 8.06556 8.25419 8.48632 9.01296 9.81412 10.35047 11.22886 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013518 B = 0.002616 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.854605 B =10699.458042 C =12056.174963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.124 3.876 3 H 0.114 0.886 4 N -0.710 5.710 5 C 0.524 3.476 6 O -0.541 6.541 7 C -0.113 4.113 8 C -0.115 4.115 9 C -0.124 4.124 10 C -0.124 4.124 11 C -0.119 4.119 12 C 0.510 3.490 13 O -0.532 6.532 14 N -0.709 5.709 15 C 0.130 3.870 16 H 0.095 0.905 17 C 0.141 3.859 18 N -0.601 5.601 19 C -0.340 4.340 20 H 0.066 0.934 21 C -0.024 4.024 22 N -0.913 5.913 23 Si 1.064 2.936 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.141 3.859 28 C -0.110 4.110 29 H 0.076 0.924 30 C -0.137 4.137 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.410 0.590 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.398 0.602 45 H 0.055 0.945 46 H 0.027 0.973 47 H 0.268 0.732 48 H 0.026 0.974 49 H 0.030 0.970 50 H 0.051 0.949 51 H 0.055 0.945 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.010 -3.174 16.996 22.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.015 3.985 3 H 0.132 0.868 4 N -0.363 5.363 5 C 0.310 3.690 6 O -0.418 6.418 7 C -0.135 4.135 8 C -0.153 4.153 9 C -0.161 4.161 10 C -0.161 4.161 11 C -0.157 4.157 12 C 0.295 3.705 13 O -0.408 6.408 14 N -0.359 5.359 15 C 0.025 3.975 16 H 0.113 0.887 17 C 0.014 3.986 18 N -0.328 5.328 19 C -0.467 4.467 20 H 0.084 0.916 21 C -0.226 4.226 22 N -0.554 5.554 23 Si 0.893 3.107 24 H -0.211 1.211 25 H -0.220 1.220 26 H -0.220 1.220 27 C 0.015 3.985 28 C -0.129 4.129 29 H 0.094 0.906 30 C -0.195 4.195 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.247 0.753 35 H 0.119 0.881 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.233 0.767 45 H 0.074 0.926 46 H 0.045 0.955 47 H 0.079 0.921 48 H 0.044 0.956 49 H 0.048 0.952 50 H 0.070 0.930 51 H 0.074 0.926 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.967 -3.121 17.308 21.851 hybrid contribution -1.719 0.092 -0.642 1.837 sum -14.686 -3.030 16.666 22.419 Atomic orbital electron populations 1.22112 0.92930 1.03012 1.03475 1.20771 0.95517 0.98321 0.83912 0.86814 1.45749 1.67337 1.14908 1.08338 1.20610 0.76899 0.87099 0.84350 1.90663 1.50338 1.16017 1.84794 1.21958 1.01073 0.97168 0.93272 1.22368 0.98958 0.97412 0.96595 1.22507 1.01954 0.96710 0.94968 1.22356 0.99891 0.95350 0.98548 1.22162 1.00179 1.00060 0.93322 1.20469 0.80416 0.84889 0.84754 1.90723 1.37293 1.26408 1.86422 1.45841 1.52974 1.31726 1.05394 1.22436 0.95662 0.97338 0.82096 0.88744 1.21802 0.92990 0.97686 0.86107 1.44431 1.00773 1.85259 1.02378 1.19708 0.84760 1.38722 1.03538 0.91607 1.25773 1.00640 0.96973 0.99192 1.70791 1.30868 1.16199 1.37530 0.83546 0.75973 0.75803 0.75348 1.21055 1.22021 1.21968 1.21385 0.85212 0.98430 0.93496 1.22425 0.95334 0.99566 0.95620 0.90555 1.21736 0.96973 0.99646 1.01105 0.91785 0.90917 0.90942 0.75258 0.88068 0.91139 0.90678 0.91159 0.91350 0.91518 0.91579 0.91355 0.89146 0.76744 0.92644 0.95543 0.92090 0.95628 0.95229 0.92970 0.92583 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.38 37.16 0.35 -1.10 16 2 C 0.12 1.49 2.98 -69.08 -0.21 1.29 16 3 H 0.11 1.47 7.58 -51.93 -0.39 1.07 16 4 N -0.71 -8.36 4.90 -54.93 -0.27 -8.63 16 5 C 0.52 6.35 6.96 -10.99 -0.08 6.28 16 6 O -0.54 -8.17 14.87 5.56 0.08 -8.09 16 7 C -0.11 -1.05 3.30 -90.65 -0.30 -1.35 16 8 C -0.12 -0.85 6.31 -25.07 -0.16 -1.01 16 9 C -0.12 -0.81 6.91 -24.73 -0.17 -0.98 16 10 C -0.12 -0.91 6.83 -25.10 -0.17 -1.08 16 11 C -0.12 -1.08 6.40 -25.65 -0.16 -1.25 16 12 C 0.51 7.67 7.22 -10.99 -0.08 7.59 16 13 O -0.53 -10.00 15.58 5.56 0.09 -9.91 16 14 N -0.71 -10.12 5.12 -51.73 -0.27 -10.38 16 15 C 0.13 2.32 2.77 -65.78 -0.18 2.14 16 16 H 0.09 1.84 7.63 -51.93 -0.40 1.44 16 17 C 0.14 3.36 4.99 -2.53 -0.01 3.34 16 18 N -0.60 -15.43 3.29 -170.06 -0.56 -15.99 16 19 C -0.34 -9.77 10.02 -15.06 -0.15 -9.93 16 20 H 0.07 1.87 7.97 -52.49 -0.42 1.46 16 21 C -0.02 -0.70 5.08 -17.43 -0.09 -0.78 16 22 N -0.91 -28.30 12.93 55.49 0.72 -27.58 16 23 Si 1.06 26.03 30.00 -169.99 -5.10 20.93 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.14 2.87 6.85 -3.06 -0.02 2.85 16 28 C -0.11 -1.73 3.16 -88.78 -0.28 -2.01 16 29 H 0.08 1.10 8.00 -51.93 -0.42 0.68 16 30 C -0.14 -1.71 9.16 37.16 0.34 -1.37 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.55 7.56 -51.93 -0.39 0.16 16 34 H 0.41 4.61 7.79 -40.82 -0.32 4.29 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.55 7.85 -51.93 -0.41 0.14 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 1.01 6.39 -51.93 -0.33 0.68 16 44 H 0.40 4.45 7.93 -40.82 -0.32 4.13 16 45 H 0.06 1.54 7.95 -51.93 -0.41 1.13 16 46 H 0.03 0.67 6.81 -51.93 -0.35 0.32 16 47 H 0.27 8.30 6.06 -40.82 -0.25 8.05 16 48 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.03 0.60 7.77 -51.93 -0.40 0.19 16 50 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 51 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 52 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16 LS Contribution 409.40 15.07 6.17 6.17 Total: -1.00 -35.19 409.40 -9.61 -44.80 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -9.10 Total: 6.05 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -1.37 Total: 2.62 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: -0.38 Total: -62.58 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.17 Total: -18.00 kcal Atomic # 14 Polarization: 26.03 SS G_CDS: -5.10 Total: 20.93 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.19 -9.61 -44.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207100858.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.756 kcal (2) G-P(sol) polarization free energy of solvation -35.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds