Wall clock time and date at job start Tue Mar 31 2020 20:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46728 * 2 1 4 4 N 1.46497 * 109.47470 * 120.00265 * 2 1 3 5 5 C 1.34778 * 119.99819 * 275.00109 * 4 2 1 6 6 O 1.21281 * 119.99857 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00291 * 180.02562 * 5 4 2 8 8 C 1.54269 * 110.02757 * 297.16551 * 7 5 4 9 9 C 1.54896 * 104.19638 * 217.10070 * 8 7 5 10 10 C 1.54892 * 102.74442 * 37.94225 * 9 8 7 11 11 C 1.53872 * 110.03840 * 180.02562 * 7 5 4 12 12 C 1.50698 * 109.47188 * 240.00188 * 2 1 3 13 13 O 1.21280 * 120.00482 * 239.99773 * 12 2 1 14 14 N 1.34779 * 119.99838 * 59.99827 * 12 2 1 15 15 C 1.46501 * 120.00089 * 180.02562 * 14 12 2 16 16 H 1.09004 * 110.89017 * 37.42144 * 15 14 12 17 17 C 1.54917 * 111.00303 * 273.54569 * 15 14 12 18 18 N 1.47421 * 104.83049 * 204.87799 * 17 15 14 19 19 C 1.36939 * 125.64596 * 204.09087 * 18 17 15 20 20 H 1.08001 * 119.99895 * 163.19156 * 19 18 17 21 21 C 1.38813 * 119.99784 * 343.18642 * 19 18 17 22 22 N 1.31614 * 120.00052 * 331.97054 * 21 19 18 23 23 Si 1.86800 * 119.99739 * 151.97353 * 21 19 18 24 24 H 1.48502 * 109.47010 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47390 * 299.99701 * 23 21 19 26 26 H 1.48497 * 109.47292 * 60.00057 * 23 21 19 27 27 C 1.47023 * 108.70467 * 24.35070 * 18 17 15 28 28 C 1.54328 * 107.26445 * 358.59038 * 27 18 17 29 29 H 1.08998 * 110.52030 * 96.45561 * 28 27 18 30 30 C 1.53008 * 110.84757 * 219.66919 * 28 27 18 31 31 H 1.09005 * 109.46728 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46836 * 299.99604 * 1 2 3 33 33 H 1.08999 * 109.47127 * 60.00038 * 1 2 3 34 34 H 0.96996 * 120.00611 * 95.00381 * 4 2 1 35 35 H 1.09005 * 110.01825 * 58.60669 * 7 5 4 36 36 H 1.09000 * 110.48991 * 335.78057 * 8 7 5 37 37 H 1.09003 * 110.48893 * 98.42724 * 8 7 5 38 38 H 1.09000 * 110.75633 * 279.63263 * 9 8 7 39 39 H 1.08996 * 110.75528 * 156.25341 * 9 8 7 40 40 H 1.09000 * 110.48581 * 203.37436 * 10 9 8 41 41 H 1.09006 * 110.48611 * 80.73606 * 10 9 8 42 42 H 1.08997 * 110.03332 * 238.57075 * 11 7 5 43 43 H 1.09007 * 110.02554 * 359.97438 * 11 7 5 44 44 H 0.96995 * 120.00137 * 359.97438 * 14 12 2 45 45 H 1.08998 * 110.36765 * 86.03394 * 17 15 14 46 46 H 1.09003 * 110.36420 * 323.71274 * 17 15 14 47 47 H 0.97004 * 120.00168 * 353.96490 * 22 21 19 48 48 H 1.09003 * 109.87723 * 118.13568 * 27 18 17 49 49 H 1.08998 * 109.88584 * 239.29324 * 27 18 17 50 50 H 1.08997 * 109.47048 * 173.69184 * 30 28 27 51 51 H 1.08995 * 109.47257 * 293.69439 * 30 28 27 52 52 H 1.09004 * 109.46914 * 53.69389 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8591 1.1586 2.4114 7 6 2.6501 -0.7285 3.5874 8 6 1.6700 -1.8507 3.9874 9 6 1.6767 -1.8268 5.5361 10 6 1.7595 -0.3131 5.8541 11 6 2.7063 0.2490 4.7744 12 6 2.0324 -0.7104 -1.2305 13 8 2.7297 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1946 -0.9407 -3.6508 16 1 2.1997 -2.0204 -3.5011 17 6 3.6005 -0.4292 -4.0528 18 7 3.7020 -0.7012 -5.4982 19 6 4.8667 -0.8615 -6.2002 20 1 4.8490 -1.3186 -7.1785 21 6 6.0702 -0.4364 -5.6544 22 7 6.0875 0.5607 -4.7956 23 14 7.6650 -1.2797 -6.1390 24 1 8.7992 -0.6428 -5.4226 25 1 7.5947 -2.7179 -5.7761 26 1 7.8692 -1.1482 -7.6040 27 6 2.3458 -0.7655 -6.0621 28 6 1.3550 -0.5561 -4.8975 29 1 1.0420 0.4867 -4.8451 30 6 0.1436 -1.4798 -5.0404 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.2492 -1.6317 1.1526 35 1 3.6396 -1.1453 3.3993 36 1 0.6709 -1.6383 3.6069 37 1 2.0226 -2.8143 3.6193 38 1 2.5484 -2.3517 5.9268 39 1 0.7564 -2.2551 5.9330 40 1 2.1772 -0.1544 6.8483 41 1 0.7748 0.1477 5.7750 42 1 3.7230 0.3063 5.1631 43 1 2.3702 1.2372 4.4605 44 1 1.1487 0.5386 -2.5435 45 1 4.3722 -0.9741 -3.5091 46 1 3.6841 0.6406 -3.8613 47 1 5.2740 1.0554 -4.6102 48 1 2.2166 0.0196 -6.8072 49 1 2.1793 -1.7420 -6.5170 50 1 -0.4842 -1.3954 -4.1534 51 1 -0.4308 -1.1922 -5.9209 52 1 0.4830 -2.5100 -5.1486 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207100858.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:19 Heat of formation + Delta-G solvation = -96.092708 kcal Electronic energy + Delta-G solvation = -30143.575542 eV Core-core repulsion = 26141.476531 eV Total energy + Delta-G solvation = -4002.099011 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.75280 -40.86162 -39.46267 -38.06566 -36.12886 -35.94585 -34.56346 -32.31160 -32.11022 -29.99268 -29.56942 -29.34589 -27.25147 -26.10664 -25.05036 -23.15443 -22.17446 -21.74490 -21.53654 -21.11353 -20.60200 -19.64861 -18.89824 -18.01676 -17.61866 -17.05122 -16.58543 -16.34719 -16.27487 -15.97527 -15.69548 -15.67612 -15.38635 -14.79437 -14.57116 -14.49318 -14.47335 -14.20826 -14.07644 -13.79997 -13.39359 -13.37889 -13.06523 -12.76559 -12.70540 -12.66643 -12.55414 -12.29041 -12.19604 -12.09678 -12.03387 -11.94914 -11.92977 -11.67348 -11.63429 -11.61158 -11.42268 -11.08167 -10.85589 -10.56753 -10.33162 -10.18093 -9.08307 -8.38958 -5.40557 1.37321 1.51497 1.51998 1.61279 1.71446 1.79534 2.28065 2.60173 3.13676 3.34877 3.46394 3.49040 3.61987 3.66288 3.77213 3.83622 3.92874 3.96164 4.05470 4.23550 4.28331 4.43674 4.45726 4.51216 4.52869 4.54699 4.62049 4.67230 4.74968 4.78539 4.80442 4.90170 4.94467 4.96685 4.97852 5.02697 5.08457 5.12558 5.16196 5.21672 5.22820 5.24959 5.32994 5.41931 5.46228 5.46572 5.62358 6.24670 6.36913 6.40623 6.83102 7.04942 7.11160 7.63804 8.21501 8.92988 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013518 B = 0.002616 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.854605 B =10699.458042 C =12056.174963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.129 3.871 3 H 0.106 0.894 4 N -0.709 5.709 5 C 0.521 3.479 6 O -0.575 6.575 7 C -0.113 4.113 8 C -0.112 4.112 9 C -0.119 4.119 10 C -0.122 4.122 11 C -0.122 4.122 12 C 0.511 3.489 13 O -0.572 6.572 14 N -0.695 5.695 15 C 0.150 3.850 16 H 0.081 0.919 17 C 0.150 3.850 18 N -0.626 5.626 19 C -0.348 4.348 20 H 0.065 0.935 21 C -0.081 4.081 22 N -0.944 5.944 23 Si 1.114 2.886 24 H -0.292 1.292 25 H -0.283 1.283 26 H -0.267 1.267 27 C 0.132 3.868 28 C -0.091 4.091 29 H 0.098 0.902 30 C -0.129 4.129 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.414 0.586 35 H 0.109 0.891 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.417 0.583 45 H 0.001 0.999 46 H 0.006 0.994 47 H 0.254 0.746 48 H 0.025 0.975 49 H 0.035 0.965 50 H 0.077 0.923 51 H 0.076 0.924 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.192 -4.243 17.350 24.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.020 3.980 3 H 0.124 0.876 4 N -0.362 5.362 5 C 0.309 3.691 6 O -0.454 6.454 7 C -0.134 4.134 8 C -0.150 4.150 9 C -0.156 4.156 10 C -0.159 4.159 11 C -0.159 4.159 12 C 0.297 3.703 13 O -0.451 6.451 14 N -0.347 5.347 15 C 0.044 3.956 16 H 0.099 0.901 17 C 0.023 3.977 18 N -0.353 5.353 19 C -0.477 4.477 20 H 0.083 0.917 21 C -0.276 4.276 22 N -0.587 5.587 23 Si 0.937 3.063 24 H -0.218 1.218 25 H -0.210 1.210 26 H -0.193 1.193 27 C 0.007 3.993 28 C -0.110 4.110 29 H 0.116 0.884 30 C -0.186 4.186 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.251 0.749 35 H 0.127 0.873 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.255 0.745 45 H 0.020 0.980 46 H 0.024 0.976 47 H 0.064 0.936 48 H 0.043 0.957 49 H 0.053 0.947 50 H 0.096 0.904 51 H 0.095 0.905 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.218 -4.187 17.641 23.671 hybrid contribution -1.037 0.445 -0.791 1.378 sum -16.255 -3.742 16.850 23.709 Atomic orbital electron populations 1.22081 0.90092 1.03877 1.04533 1.20781 0.97551 0.97151 0.82483 0.87607 1.45817 1.67133 1.15034 1.08218 1.21134 0.76163 0.86760 0.85005 1.90646 1.51928 1.17494 1.85358 1.22050 1.01865 0.97636 0.91885 1.22383 0.98116 0.97060 0.97426 1.22511 1.03040 0.95994 0.94081 1.22350 0.99132 0.95966 0.98491 1.22167 1.01044 0.98822 0.93913 1.21018 0.79408 0.84306 0.85567 1.90709 1.38976 1.28375 1.87021 1.45629 1.52731 1.32126 1.04211 1.21966 0.92692 0.96578 0.84412 0.90052 1.21619 0.95247 0.95760 0.85115 1.44712 1.02141 1.85089 1.03356 1.20022 0.86363 1.37609 1.03698 0.91733 1.27203 1.04188 0.97067 0.99183 1.70905 1.30206 1.17915 1.39689 0.82891 0.71983 0.74980 0.76406 1.21800 1.20953 1.19256 1.21644 0.83775 0.98547 0.95355 1.22375 0.95086 1.01890 0.91658 0.88375 1.21700 0.95480 0.98058 1.03389 0.90970 0.91085 0.88653 0.74871 0.87304 0.91559 0.89410 0.90185 0.90158 0.90298 0.92161 0.90618 0.91678 0.74467 0.98011 0.97586 0.93602 0.95695 0.94652 0.90408 0.90458 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.38 71.98 0.68 -1.73 16 2 C 0.13 3.03 2.98 44.25 0.13 3.16 16 3 H 0.11 2.71 7.58 -2.38 -0.02 2.69 16 4 N -0.71 -16.53 4.90 -446.10 -2.19 -18.72 16 5 C 0.52 12.66 6.96 87.66 0.61 13.27 16 6 O -0.57 -17.69 14.87 -3.03 -0.05 -17.73 16 7 C -0.11 -2.03 3.30 -10.82 -0.04 -2.07 16 8 C -0.11 -1.48 6.31 31.67 0.20 -1.28 16 9 C -0.12 -1.29 6.91 31.89 0.22 -1.07 16 10 C -0.12 -1.64 6.83 31.65 0.22 -1.42 16 11 C -0.12 -2.17 6.40 31.30 0.20 -1.97 16 12 C 0.51 15.17 7.22 87.66 0.63 15.80 16 13 O -0.57 -21.86 15.58 -3.03 -0.05 -21.91 16 14 N -0.70 -19.07 5.12 -435.95 -2.23 -21.30 16 15 C 0.15 5.30 2.77 46.38 0.13 5.43 16 16 H 0.08 3.16 7.63 -2.38 -0.02 3.14 16 17 C 0.15 7.42 4.99 86.86 0.43 7.85 16 18 N -0.63 -32.87 3.29 -691.96 -2.28 -35.15 16 19 C -0.35 -20.52 10.02 84.03 0.84 -19.68 16 20 H 0.06 3.72 7.97 -2.91 -0.02 3.70 16 21 C -0.08 -4.84 5.08 84.86 0.43 -4.41 16 22 N -0.94 -60.89 12.93 21.65 0.28 -60.61 16 23 Si 1.11 53.49 30.00 68.60 2.06 55.55 16 24 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 25 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 27 C 0.13 5.27 6.85 86.73 0.59 5.87 16 28 C -0.09 -2.65 3.16 -9.60 -0.03 -2.68 16 29 H 0.10 2.49 8.00 -2.39 -0.02 2.47 16 30 C -0.13 -2.71 9.16 71.98 0.66 -2.05 16 31 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 1.12 7.56 -2.39 -0.02 1.10 16 34 H 0.41 9.19 7.79 -92.71 -0.72 8.47 16 35 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.07 0.94 7.85 -2.39 -0.02 0.92 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.06 1.51 6.39 -2.38 -0.02 1.50 16 44 H 0.42 8.31 7.93 -92.71 -0.74 7.58 16 45 H 0.00 0.08 7.95 -2.39 -0.02 0.06 16 46 H 0.01 0.34 6.81 -2.39 -0.02 0.32 16 47 H 0.25 16.54 6.06 -92.71 -0.56 15.98 16 48 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.04 1.38 7.77 -2.39 -0.02 1.36 16 50 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 52 H 0.05 1.16 8.07 -2.38 -0.02 1.14 16 Total: -1.00 -81.42 409.40 1.12 -80.29 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: -0.34 Total: 26.56 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 5.91 Total: 13.02 kcal Atomic # 7 Polarization: -129.36 SS G_CDS: -6.42 Total: -135.78 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -0.09 Total: -39.64 kcal Atomic # 14 Polarization: 53.49 SS G_CDS: 2.06 Total: 55.55 kcal Total: -81.42 1.12 -80.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207100858.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.799 kcal (2) G-P(sol) polarization free energy of solvation -81.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds