Wall clock time and date at job start Tue Mar 31 2020 20:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 119.99914 * 2 1 4 4 C 1.53000 * 109.47053 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.47242 * 240.00008 * 3 2 1 6 6 C 1.53002 * 109.46919 * 120.00033 * 3 2 1 7 7 C 1.50696 * 109.47300 * 179.97438 * 6 3 2 8 8 O 1.21284 * 120.00109 * 0.02562 * 7 6 3 9 9 N 1.34777 * 120.00137 * 179.97438 * 7 6 3 10 10 C 1.46506 * 119.99873 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.27084 * 34.30425 * 10 9 7 12 12 C 1.53992 * 110.31014 * 272.21077 * 10 9 7 13 13 N 1.48125 * 106.94669 * 242.33764 * 12 10 9 14 14 C 1.46894 * 110.95094 * 214.10358 * 13 12 10 15 15 C 1.50698 * 109.47595 * 307.36907 * 14 13 12 16 16 O 1.21293 * 119.99297 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00295 * 180.02562 * 15 14 13 18 18 C 1.37102 * 119.99719 * 180.02562 * 17 15 14 19 19 H 1.07992 * 120.00041 * 0.02562 * 18 17 15 20 20 C 1.38946 * 119.99678 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00220 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00365 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47344 * 89.99443 * 22 20 18 24 24 H 1.48491 * 109.47313 * 209.99896 * 22 20 18 25 25 H 1.48505 * 109.46659 * 330.00096 * 22 20 18 26 26 C 1.48534 * 105.82146 * 334.59298 * 13 12 10 27 27 C 1.54597 * 110.30615 * 156.39242 * 10 9 7 28 28 H 1.09002 * 110.72862 * 22.33573 * 27 10 9 29 29 C 1.53001 * 110.72110 * 259.23317 * 27 10 9 30 30 H 1.08000 * 120.00176 * 359.97438 * 1 2 3 31 31 H 1.08002 * 119.99671 * 179.97438 * 1 2 3 32 32 H 1.07998 * 119.99485 * 180.02562 * 2 1 3 33 33 H 1.09002 * 109.46994 * 179.97438 * 4 3 2 34 34 H 1.08998 * 109.46752 * 299.98909 * 4 3 2 35 35 H 1.08996 * 109.47966 * 59.99376 * 4 3 2 36 36 H 1.08996 * 109.46952 * 300.00298 * 5 3 2 37 37 H 1.09001 * 109.46832 * 60.00317 * 5 3 2 38 38 H 1.09002 * 109.46695 * 179.97438 * 5 3 2 39 39 H 1.09004 * 109.46930 * 60.00101 * 6 3 2 40 40 H 1.09000 * 109.47312 * 300.00045 * 6 3 2 41 41 H 0.96995 * 120.00018 * 0.27749 * 9 7 6 42 42 H 1.09001 * 109.91536 * 1.66768 * 12 10 9 43 43 H 1.09000 * 109.91284 * 122.95762 * 12 10 9 44 44 H 1.09002 * 109.47181 * 67.37425 * 14 13 12 45 45 H 1.08999 * 109.47188 * 187.36483 * 14 13 12 46 46 H 0.96991 * 120.00241 * 0.02562 * 17 15 14 47 47 H 0.96998 * 120.00064 * 180.02562 * 21 20 18 48 48 H 1.08996 * 110.66890 * 280.82507 * 26 13 12 49 49 H 1.08997 * 110.80972 * 157.76218 * 26 13 12 50 50 H 1.09004 * 109.47522 * 60.00291 * 29 27 10 51 51 H 1.09007 * 109.46734 * 180.02562 * 29 27 10 52 52 H 1.08998 * 109.47028 * 299.99497 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4680 0.0006 5 6 2.9431 1.3862 -1.2492 6 6 2.9431 1.3861 1.2493 7 6 3.6971 2.6909 1.2490 8 8 3.5455 3.4787 0.3395 9 7 4.5391 2.9828 2.2601 10 6 5.2726 4.2511 2.2595 11 1 4.6642 5.0389 1.8153 12 6 6.5983 4.1015 1.4905 13 7 7.6901 4.3564 2.4586 14 6 8.8264 5.0203 1.8060 15 6 9.2394 4.2305 0.5908 16 8 8.6452 3.2148 0.2970 17 7 10.2689 4.6529 -0.1695 18 6 10.6442 3.9346 -1.2754 19 1 10.1147 3.0307 -1.5374 20 6 11.7053 4.3703 -2.0595 21 7 12.0655 3.6817 -3.1192 22 14 12.6209 5.9343 -1.6067 23 1 13.7503 5.6023 -0.7014 24 1 13.1462 6.5749 -2.8390 25 1 11.6940 6.8691 -0.9193 26 6 7.1023 5.2213 3.5134 27 6 5.6801 4.6358 3.7003 28 1 5.7038 3.7554 4.3426 29 6 4.7300 5.6921 4.2679 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9354 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.6142 3.4120 0.0011 34 1 0.4424 2.4105 -0.8892 35 1 0.4428 2.4101 0.8907 36 1 3.6514 0.5577 -1.2492 37 1 2.3164 1.3285 -2.1392 38 1 3.4877 2.3304 -1.2494 39 1 3.6515 0.5576 1.2492 40 1 2.3165 1.3283 2.1393 41 1 4.6629 2.3513 2.9859 42 1 6.6838 3.0910 1.0909 43 1 6.6414 4.8291 0.6800 44 1 8.5349 6.0262 1.5038 45 1 9.6624 5.0784 2.5029 46 1 10.7443 5.4649 0.0656 47 1 12.8064 3.9857 -3.6664 48 1 7.0509 6.2569 3.1773 49 1 7.6738 5.1464 4.4385 50 1 3.7143 5.2967 4.2832 51 1 5.0358 5.9483 5.2824 52 1 4.7633 6.5843 3.6426 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207158032.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:13 Heat of formation + Delta-G solvation = -41.957289 kcal Electronic energy + Delta-G solvation = -30204.634654 eV Core-core repulsion = 26204.883131 eV Total energy + Delta-G solvation = -3999.751523 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.48270 -39.34465 -37.98480 -36.96571 -34.50031 -33.88873 -32.65055 -31.67250 -31.42166 -29.36841 -28.05442 -27.28821 -27.04590 -25.29528 -23.78716 -22.62443 -21.38044 -20.61083 -20.00893 -19.31793 -18.31244 -18.13975 -17.05173 -16.73393 -16.04763 -15.53110 -15.37982 -15.16376 -15.07279 -14.75201 -14.41565 -14.27335 -14.00843 -13.56496 -13.37366 -13.20747 -13.13606 -12.91443 -12.70188 -12.37812 -12.26096 -12.08055 -11.96322 -11.87709 -11.77177 -11.63834 -11.40135 -11.19085 -11.15450 -11.12243 -10.99343 -10.85168 -10.77468 -10.70540 -10.59168 -9.97037 -9.55939 -9.54536 -9.42741 -8.96125 -8.51625 -8.18259 -8.04868 -6.30490 -3.81857 2.11141 2.67654 3.02824 3.07088 3.15276 3.19459 3.73430 4.02482 4.10914 4.33291 4.55199 4.63787 4.67991 4.78536 4.80984 4.90637 5.03426 5.14021 5.21643 5.25408 5.27141 5.34125 5.41292 5.44476 5.50074 5.53594 5.62378 5.63896 5.66378 5.74456 5.78945 5.79465 5.89750 5.91231 5.92923 5.99919 6.06476 6.08397 6.10816 6.35757 6.41905 6.44028 6.58948 6.66873 6.75902 7.10339 7.14626 7.53037 7.58577 8.14871 8.30330 8.60129 8.95560 9.42672 9.82829 10.82627 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011499 B = 0.002837 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.387057 B = 9866.903619 C =11815.245830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.141 4.141 3 C -0.019 4.019 4 C -0.155 4.155 5 C -0.152 4.152 6 C -0.129 4.129 7 C 0.515 3.485 8 O -0.529 6.529 9 N -0.719 5.719 10 C 0.134 3.866 11 H 0.092 0.908 12 C 0.041 3.959 13 N -0.495 5.495 14 C 0.032 3.968 15 C 0.450 3.550 16 O -0.561 6.561 17 N -0.590 5.590 18 C -0.304 4.304 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.879 3.121 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.036 3.964 27 C -0.100 4.100 28 H 0.088 0.912 29 C -0.142 4.142 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.399 0.601 42 H 0.107 0.893 43 H 0.046 0.954 44 H 0.050 0.950 45 H 0.092 0.908 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.046 0.954 49 H 0.084 0.916 50 H 0.057 0.943 51 H 0.059 0.941 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.033 0.816 15.416 24.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.159 4.159 3 C -0.020 4.020 4 C -0.211 4.211 5 C -0.209 4.209 6 C -0.169 4.169 7 C 0.302 3.698 8 O -0.406 6.406 9 N -0.370 5.370 10 C 0.029 3.971 11 H 0.110 0.890 12 C -0.088 4.088 13 N -0.219 5.219 14 C -0.099 4.099 15 C 0.236 3.764 16 O -0.443 6.443 17 N -0.229 5.229 18 C -0.432 4.432 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.092 4.092 27 C -0.119 4.119 28 H 0.106 0.894 29 C -0.200 4.200 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.125 0.875 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.234 0.766 42 H 0.125 0.875 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.110 0.890 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.064 0.936 49 H 0.102 0.898 50 H 0.076 0.924 51 H 0.078 0.922 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.186 0.186 14.561 24.087 hybrid contribution 0.820 1.562 0.171 1.772 sum -18.367 1.747 14.732 23.610 Atomic orbital electron populations 1.23989 0.96167 1.01929 1.01655 1.22989 0.95915 0.97754 0.99284 1.19372 0.94872 0.93093 0.94654 1.22175 0.98488 0.99812 1.00669 1.22072 0.99186 1.04105 0.95493 1.21710 0.99267 0.95978 0.99932 1.20617 0.79120 0.88493 0.81562 1.90594 1.64725 1.50482 1.34781 1.46077 1.44551 1.20778 1.25580 1.22034 0.93335 0.86186 0.95568 0.88999 1.23371 0.87311 1.04805 0.93284 1.64703 1.06109 1.40200 1.10910 1.22149 0.95550 0.95847 0.96395 1.19628 0.83429 0.87874 0.85493 1.90542 1.55013 1.26248 1.72521 1.42192 1.30217 1.24631 1.25849 1.19421 1.14639 1.08541 1.00627 0.86285 1.25038 0.97173 0.98090 0.95867 1.69622 1.28252 1.38827 1.15412 0.86673 0.80603 0.83183 0.78944 1.19580 1.20176 1.19548 1.23350 0.93929 0.95141 0.96779 1.22322 0.94738 0.99275 0.95578 0.89371 1.21776 0.98901 0.98354 1.00928 0.87898 0.88844 0.87465 0.89503 0.92860 0.93453 0.93109 0.93063 0.89212 0.88661 0.89114 0.76628 0.87468 0.93554 0.93185 0.88976 0.79717 0.91615 0.93575 0.89780 0.92402 0.92205 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.67 13.70 29.01 0.40 -1.27 16 2 C -0.14 -1.29 8.76 -36.03 -0.32 -1.61 16 3 C -0.02 -0.20 0.74 -155.66 -0.11 -0.32 16 4 C -0.15 -1.64 6.83 37.16 0.25 -1.39 16 5 C -0.15 -1.92 8.16 37.16 0.30 -1.62 16 6 C -0.13 -1.23 4.75 -27.88 -0.13 -1.37 16 7 C 0.51 6.39 7.24 -10.99 -0.08 6.31 16 8 O -0.53 -8.35 11.02 5.55 0.06 -8.29 16 9 N -0.72 -7.97 5.01 -52.49 -0.26 -8.23 16 10 C 0.13 1.69 2.89 -66.57 -0.19 1.50 16 11 H 0.09 1.25 7.31 -51.93 -0.38 0.87 16 12 C 0.04 0.69 4.87 -2.63 -0.01 0.68 16 13 N -0.49 -7.80 5.27 -231.71 -1.22 -9.02 16 14 C 0.03 0.55 5.48 -4.98 -0.03 0.52 16 15 C 0.45 10.31 7.36 -10.99 -0.08 10.23 16 16 O -0.56 -14.93 13.37 5.55 0.07 -14.86 16 17 N -0.59 -14.21 5.09 -10.97 -0.06 -14.27 16 18 C -0.30 -8.67 10.16 -14.93 -0.15 -8.82 16 19 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 20 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 21 N -0.88 -25.99 13.96 55.50 0.77 -25.22 16 22 Si 0.88 19.56 27.74 -169.99 -4.71 14.84 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 25 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 26 C 0.04 0.41 6.00 -1.90 -0.01 0.40 16 27 C -0.10 -0.98 3.37 -88.76 -0.30 -1.27 16 28 H 0.09 0.79 7.75 -51.93 -0.40 0.39 16 29 C -0.14 -1.12 9.16 37.16 0.34 -0.78 16 30 H 0.10 0.84 5.69 -52.49 -0.30 0.54 16 31 H 0.09 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.11 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.09 1.12 5.51 -51.93 -0.29 0.83 16 34 H 0.05 0.54 7.50 -51.93 -0.39 0.16 16 35 H 0.05 0.44 7.50 -51.93 -0.39 0.05 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.09 1.38 5.51 -51.93 -0.29 1.10 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.40 3.41 8.36 -40.82 -0.34 3.07 16 42 H 0.11 2.20 6.53 -51.93 -0.34 1.86 16 43 H 0.05 0.88 7.60 -51.93 -0.39 0.49 16 44 H 0.05 0.76 7.89 -51.93 -0.41 0.35 16 45 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.37 7.85 5.76 -40.82 -0.24 7.61 16 47 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 48 H 0.05 0.50 7.73 -51.93 -0.40 0.10 16 49 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 50 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 52 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 LS Contribution 402.83 15.07 6.07 6.07 Total: -1.00 -33.65 402.83 -8.25 -41.90 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -8.76 Total: 14.83 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -0.22 Total: 2.24 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: -0.77 Total: -56.74 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: 0.14 Total: -23.14 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.71 Total: 14.84 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.65 -8.25 -41.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207158032.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.054 kcal (2) G-P(sol) polarization free energy of solvation -33.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds