Wall clock time and date at job start Tue Mar 31 2020 20:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 119.99914 * 2 1 4 4 C 1.53000 * 109.47053 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.47242 * 240.00008 * 3 2 1 6 6 C 1.53002 * 109.46919 * 120.00033 * 3 2 1 7 7 C 1.50696 * 109.47300 * 179.97438 * 6 3 2 8 8 O 1.21284 * 120.00109 * 0.02562 * 7 6 3 9 9 N 1.34777 * 120.00137 * 179.97438 * 7 6 3 10 10 C 1.46506 * 119.99873 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.27084 * 34.30425 * 10 9 7 12 12 C 1.53992 * 110.31014 * 272.21077 * 10 9 7 13 13 N 1.48125 * 106.94669 * 242.33764 * 12 10 9 14 14 C 1.46894 * 110.95094 * 214.10358 * 13 12 10 15 15 C 1.50698 * 109.47595 * 307.36907 * 14 13 12 16 16 O 1.21293 * 119.99297 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00295 * 180.02562 * 15 14 13 18 18 C 1.37102 * 119.99719 * 180.02562 * 17 15 14 19 19 H 1.07992 * 120.00041 * 0.02562 * 18 17 15 20 20 C 1.38946 * 119.99678 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00220 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00365 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47344 * 89.99443 * 22 20 18 24 24 H 1.48491 * 109.47313 * 209.99896 * 22 20 18 25 25 H 1.48505 * 109.46659 * 330.00096 * 22 20 18 26 26 C 1.48534 * 105.82146 * 334.59298 * 13 12 10 27 27 C 1.54597 * 110.30615 * 156.39242 * 10 9 7 28 28 H 1.09002 * 110.72862 * 22.33573 * 27 10 9 29 29 C 1.53001 * 110.72110 * 259.23317 * 27 10 9 30 30 H 1.08000 * 120.00176 * 359.97438 * 1 2 3 31 31 H 1.08002 * 119.99671 * 179.97438 * 1 2 3 32 32 H 1.07998 * 119.99485 * 180.02562 * 2 1 3 33 33 H 1.09002 * 109.46994 * 179.97438 * 4 3 2 34 34 H 1.08998 * 109.46752 * 299.98909 * 4 3 2 35 35 H 1.08996 * 109.47966 * 59.99376 * 4 3 2 36 36 H 1.08996 * 109.46952 * 300.00298 * 5 3 2 37 37 H 1.09001 * 109.46832 * 60.00317 * 5 3 2 38 38 H 1.09002 * 109.46695 * 179.97438 * 5 3 2 39 39 H 1.09004 * 109.46930 * 60.00101 * 6 3 2 40 40 H 1.09000 * 109.47312 * 300.00045 * 6 3 2 41 41 H 0.96995 * 120.00018 * 0.27749 * 9 7 6 42 42 H 1.09001 * 109.91536 * 1.66768 * 12 10 9 43 43 H 1.09000 * 109.91284 * 122.95762 * 12 10 9 44 44 H 1.09002 * 109.47181 * 67.37425 * 14 13 12 45 45 H 1.08999 * 109.47188 * 187.36483 * 14 13 12 46 46 H 0.96991 * 120.00241 * 0.02562 * 17 15 14 47 47 H 0.96998 * 120.00064 * 180.02562 * 21 20 18 48 48 H 1.08996 * 110.66890 * 280.82507 * 26 13 12 49 49 H 1.08997 * 110.80972 * 157.76218 * 26 13 12 50 50 H 1.09004 * 109.47522 * 60.00291 * 29 27 10 51 51 H 1.09007 * 109.46734 * 180.02562 * 29 27 10 52 52 H 1.08998 * 109.47028 * 299.99497 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4680 0.0006 5 6 2.9431 1.3862 -1.2492 6 6 2.9431 1.3861 1.2493 7 6 3.6971 2.6909 1.2490 8 8 3.5455 3.4787 0.3395 9 7 4.5391 2.9828 2.2601 10 6 5.2726 4.2511 2.2595 11 1 4.6642 5.0389 1.8153 12 6 6.5983 4.1015 1.4905 13 7 7.6901 4.3564 2.4586 14 6 8.8264 5.0203 1.8060 15 6 9.2394 4.2305 0.5908 16 8 8.6452 3.2148 0.2970 17 7 10.2689 4.6529 -0.1695 18 6 10.6442 3.9346 -1.2754 19 1 10.1147 3.0307 -1.5374 20 6 11.7053 4.3703 -2.0595 21 7 12.0655 3.6817 -3.1192 22 14 12.6209 5.9343 -1.6067 23 1 13.7503 5.6023 -0.7014 24 1 13.1462 6.5749 -2.8390 25 1 11.6940 6.8691 -0.9193 26 6 7.1023 5.2213 3.5134 27 6 5.6801 4.6358 3.7003 28 1 5.7038 3.7554 4.3426 29 6 4.7300 5.6921 4.2679 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9354 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.6142 3.4120 0.0011 34 1 0.4424 2.4105 -0.8892 35 1 0.4428 2.4101 0.8907 36 1 3.6514 0.5577 -1.2492 37 1 2.3164 1.3285 -2.1392 38 1 3.4877 2.3304 -1.2494 39 1 3.6515 0.5576 1.2492 40 1 2.3165 1.3283 2.1393 41 1 4.6629 2.3513 2.9859 42 1 6.6838 3.0910 1.0909 43 1 6.6414 4.8291 0.6800 44 1 8.5349 6.0262 1.5038 45 1 9.6624 5.0784 2.5029 46 1 10.7443 5.4649 0.0656 47 1 12.8064 3.9857 -3.6664 48 1 7.0509 6.2569 3.1773 49 1 7.6738 5.1464 4.4385 50 1 3.7143 5.2967 4.2832 51 1 5.0358 5.9483 5.2824 52 1 4.7633 6.5843 3.6426 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207158032.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:12 Heat of formation + Delta-G solvation = -68.110383 kcal Electronic energy + Delta-G solvation = -30205.768737 eV Core-core repulsion = 26204.883131 eV Total energy + Delta-G solvation = -4000.885606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.53015 -40.70050 -39.46821 -37.92910 -36.14054 -35.40477 -33.82344 -33.61963 -32.18675 -30.46636 -29.28052 -28.21103 -28.13327 -26.77478 -25.19708 -23.55440 -22.46765 -21.73626 -21.25110 -20.91963 -20.07948 -19.09048 -18.02924 -17.78446 -17.61367 -16.83712 -16.73003 -16.28576 -16.23847 -16.10279 -15.60967 -15.37711 -15.19137 -14.97090 -14.70413 -14.47037 -14.30984 -14.08366 -13.99316 -13.75018 -13.34620 -13.29292 -13.12167 -12.95098 -12.91020 -12.70517 -12.64517 -12.45656 -12.44793 -12.05296 -12.02613 -12.00721 -11.86758 -11.82091 -11.64233 -11.52950 -11.51010 -10.48281 -10.37062 -10.28176 -10.23741 -9.96383 -9.37869 -8.44336 -6.05476 1.27188 1.32930 1.41816 1.42429 1.68967 1.91201 2.20249 2.27515 2.66369 3.09712 3.15197 3.55179 3.68154 3.70420 3.84404 3.97326 4.02926 4.10895 4.19229 4.28308 4.34770 4.38719 4.40771 4.47291 4.49364 4.60892 4.63353 4.71127 4.73462 4.81004 4.83720 4.88049 4.96901 5.00119 5.04275 5.10013 5.15910 5.18702 5.22215 5.37091 5.40988 5.49118 5.51748 5.69440 5.79413 5.81107 5.89216 5.95806 6.03051 6.55997 6.62403 6.84763 7.35293 7.36291 7.92651 8.73510 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011499 B = 0.002837 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.387057 B = 9866.903619 C =11815.245830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.153 4.153 3 C -0.019 4.019 4 C -0.149 4.149 5 C -0.150 4.150 6 C -0.123 4.123 7 C 0.507 3.493 8 O -0.568 6.568 9 N -0.710 5.710 10 C 0.142 3.858 11 H 0.079 0.921 12 C 0.049 3.951 13 N -0.509 5.509 14 C 0.043 3.957 15 C 0.446 3.554 16 O -0.607 6.607 17 N -0.591 5.591 18 C -0.328 4.328 19 H 0.053 0.947 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.966 3.034 23 H -0.253 1.253 24 H -0.274 1.274 25 H -0.233 1.233 26 C 0.036 3.964 27 C -0.086 4.086 28 H 0.104 0.896 29 C -0.136 4.136 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.046 0.954 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.104 0.896 40 H 0.122 0.878 41 H 0.414 0.586 42 H 0.060 0.940 43 H 0.010 0.990 44 H 0.076 0.924 45 H 0.128 0.872 46 H 0.389 0.611 47 H 0.280 0.720 48 H 0.057 0.943 49 H 0.111 0.889 50 H 0.061 0.939 51 H 0.081 0.919 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.593 2.808 19.427 27.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.171 4.171 3 C -0.019 4.019 4 C -0.206 4.206 5 C -0.208 4.208 6 C -0.163 4.163 7 C 0.295 3.705 8 O -0.448 6.448 9 N -0.362 5.362 10 C 0.036 3.964 11 H 0.097 0.903 12 C -0.080 4.080 13 N -0.234 5.234 14 C -0.088 4.088 15 C 0.233 3.767 16 O -0.491 6.491 17 N -0.233 5.233 18 C -0.457 4.457 19 H 0.071 0.929 20 C -0.215 4.215 21 N -0.575 5.575 22 Si 0.786 3.214 23 H -0.178 1.178 24 H -0.200 1.200 25 H -0.157 1.157 26 C -0.091 4.091 27 C -0.105 4.105 28 H 0.122 0.878 29 C -0.193 4.193 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.122 0.878 40 H 0.140 0.860 41 H 0.251 0.749 42 H 0.079 0.921 43 H 0.028 0.972 44 H 0.093 0.907 45 H 0.146 0.854 46 H 0.225 0.775 47 H 0.089 0.911 48 H 0.076 0.924 49 H 0.129 0.871 50 H 0.080 0.920 51 H 0.100 0.900 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.762 2.170 18.630 27.246 hybrid contribution 0.910 0.815 -1.149 1.676 sum -18.852 2.985 17.482 25.883 Atomic orbital electron populations 1.24156 0.95830 1.02818 0.99794 1.22901 0.96222 0.97000 1.00940 1.19337 0.94705 0.94155 0.93719 1.22092 0.98360 0.98579 1.01556 1.22020 0.99390 1.02052 0.97298 1.21746 0.99436 0.94271 1.00807 1.21236 0.79134 0.89114 0.81001 1.90596 1.66043 1.51948 1.36207 1.46003 1.43737 1.20700 1.25753 1.21867 0.90839 0.86559 0.97165 0.90267 1.23094 0.90577 1.00924 0.93449 1.64674 1.05597 1.42078 1.11019 1.22125 0.97229 0.95475 0.94017 1.20934 0.81838 0.87451 0.86428 1.90543 1.56085 1.28597 1.73885 1.42019 1.31122 1.25129 1.24996 1.18972 1.15537 1.07871 1.03331 0.92932 1.26144 0.97562 1.02766 0.94989 1.69808 1.29201 1.41542 1.16982 0.85349 0.79411 0.77406 0.79253 1.17760 1.19955 1.15664 1.23542 0.94645 0.94956 0.95955 1.22322 0.94299 1.00518 0.93396 0.87804 1.21737 0.98487 0.97276 1.01814 0.87753 0.87195 0.86683 0.92068 0.92829 0.91605 0.93442 0.92953 0.92535 0.87760 0.85991 0.74894 0.92145 0.97155 0.90661 0.85442 0.77498 0.91098 0.92425 0.87127 0.92032 0.89988 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.75 13.70 67.78 0.93 -1.82 16 2 C -0.15 -2.58 8.76 25.64 0.22 -2.36 16 3 C -0.02 -0.39 0.74 -52.93 -0.04 -0.43 16 4 C -0.15 -3.17 6.83 71.98 0.49 -2.68 16 5 C -0.15 -4.12 8.16 71.98 0.59 -3.53 16 6 C -0.12 -2.29 4.75 29.85 0.14 -2.15 16 7 C 0.51 13.02 7.24 87.66 0.63 13.66 16 8 O -0.57 -19.35 11.02 -3.04 -0.03 -19.38 16 9 N -0.71 -15.73 5.01 -438.36 -2.20 -17.93 16 10 C 0.14 3.57 2.89 45.87 0.13 3.70 16 11 H 0.08 2.22 7.31 -2.39 -0.02 2.20 16 12 C 0.05 1.73 4.87 86.40 0.42 2.15 16 13 N -0.51 -15.46 5.27 -886.99 -4.67 -20.13 16 14 C 0.04 1.37 5.48 85.56 0.47 1.84 16 15 C 0.45 20.96 7.36 87.66 0.64 21.61 16 16 O -0.61 -34.62 13.37 -3.07 -0.04 -34.66 16 17 N -0.59 -28.89 5.09 -307.00 -1.56 -30.45 16 18 C -0.33 -19.80 10.16 84.04 0.85 -18.95 16 19 H 0.05 3.79 7.39 -2.91 -0.02 3.76 16 20 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 21 N -0.93 -57.64 13.96 21.66 0.30 -57.34 16 22 Si 0.97 39.68 27.74 68.60 1.90 41.58 16 23 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 25 H -0.23 -8.13 6.52 99.48 0.65 -7.48 16 26 C 0.04 0.70 6.00 86.65 0.52 1.22 16 27 C -0.09 -1.44 3.37 -9.59 -0.03 -1.48 16 28 H 0.10 1.47 7.75 -2.39 -0.02 1.45 16 29 C -0.14 -1.65 9.16 71.98 0.66 -1.00 16 30 H 0.10 1.48 5.69 -2.91 -0.02 1.47 16 31 H 0.11 1.25 8.06 -2.91 -0.02 1.23 16 32 H 0.12 1.77 8.06 -2.91 -0.02 1.74 16 33 H 0.06 1.65 5.51 -2.39 -0.01 1.64 16 34 H 0.05 1.10 7.50 -2.39 -0.02 1.08 16 35 H 0.07 1.13 7.50 -2.39 -0.02 1.11 16 36 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.06 1.94 5.51 -2.39 -0.01 1.93 16 39 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.41 6.55 8.36 -92.71 -0.78 5.78 16 42 H 0.06 2.69 6.53 -2.39 -0.02 2.68 16 43 H 0.01 0.41 7.60 -2.39 -0.02 0.40 16 44 H 0.08 2.08 7.89 -2.39 -0.02 2.06 16 45 H 0.13 3.26 8.14 -2.39 -0.02 3.24 16 46 H 0.39 15.75 5.76 -92.71 -0.53 15.21 16 47 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 48 H 0.06 1.02 7.73 -2.39 -0.02 1.00 16 49 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 51 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 52 H 0.05 0.71 8.10 -2.39 -0.02 0.69 16 Total: -1.00 -83.86 402.83 0.35 -83.51 By element: Atomic # 1 Polarization: 45.90 SS G_CDS: -0.45 Total: 45.45 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 7.11 Total: 9.35 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -8.13 Total: -125.85 kcal Atomic # 8 Polarization: -53.97 SS G_CDS: -0.07 Total: -54.04 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 1.90 Total: 41.58 kcal Total: -83.86 0.35 -83.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207158032.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.398 kcal (2) G-P(sol) polarization free energy of solvation -83.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds