Wall clock time and date at job start Tue Mar 31 2020 20:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 O 1.21281 * 119.99598 * 119.99987 * 4 2 1 6 6 N 1.34776 * 120.00175 * 300.00467 * 4 2 1 7 7 C 1.46500 * 119.99845 * 180.02562 * 6 4 2 8 8 H 1.08998 * 110.27824 * 32.90695 * 7 6 4 9 9 C 1.53994 * 110.30896 * 270.70830 * 7 6 4 10 10 N 1.47898 * 107.05899 * 242.31387 * 9 7 6 11 11 C 1.46904 * 110.99841 * 214.15533 * 10 9 7 12 12 C 1.50705 * 109.46880 * 307.39574 * 11 10 9 13 13 O 1.21288 * 120.00216 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99846 * 179.97438 * 12 11 10 15 15 C 1.37095 * 120.00305 * 180.02562 * 14 12 11 16 16 H 1.07999 * 119.99843 * 0.02562 * 15 14 12 17 17 C 1.38954 * 120.00241 * 180.02562 * 15 14 12 18 18 N 1.31408 * 119.99780 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99794 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47174 * 60.00218 * 19 17 15 21 21 H 1.48494 * 109.46928 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47170 * 300.00113 * 19 17 15 23 23 C 1.48528 * 105.82174 * 334.66708 * 10 9 7 24 24 C 1.54596 * 110.30581 * 154.99393 * 7 6 4 25 25 H 1.08998 * 110.72608 * 22.33951 * 24 7 6 26 26 C 1.52999 * 110.72620 * 259.23075 * 24 7 6 27 27 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 28 28 C 1.53785 * 113.61112 * 157.49694 * 27 2 1 29 29 C 1.53779 * 87.07854 * 220.01691 * 28 27 2 30 30 C 1.53777 * 87.08356 * 25.43282 * 29 28 27 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 33 33 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 34 34 H 0.96995 * 119.99730 * 359.97438 * 6 4 2 35 35 H 1.08999 * 109.91006 * 1.66793 * 9 7 6 36 36 H 1.08996 * 109.91802 * 122.95481 * 9 7 6 37 37 H 1.09005 * 109.46736 * 67.39460 * 11 10 9 38 38 H 1.08993 * 109.47191 * 187.39588 * 11 10 9 39 39 H 0.97009 * 119.99815 * 359.97438 * 14 12 11 40 40 H 0.97004 * 119.99525 * 180.02562 * 18 17 15 41 41 H 1.09003 * 110.66911 * 280.77756 * 23 10 9 42 42 H 1.08996 * 110.66745 * 157.64243 * 23 10 9 43 43 H 1.08997 * 109.47389 * 60.00097 * 26 24 7 44 44 H 1.09002 * 109.47285 * 180.02562 * 26 24 7 45 45 H 1.09006 * 109.46701 * 299.99668 * 26 24 7 46 46 H 1.09004 * 112.84805 * 288.79672 * 27 2 1 47 47 H 1.09001 * 113.61651 * 334.56696 * 28 27 2 48 48 H 1.09001 * 113.60934 * 105.46822 * 28 27 2 49 49 H 1.09005 * 113.61342 * 270.88516 * 29 28 27 50 50 H 1.08997 * 113.61512 * 139.98666 * 29 28 27 51 51 H 1.08995 * 113.61914 * 220.02103 * 30 29 28 52 52 H 1.08998 * 113.61402 * 89.11259 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4546 7 6 2.1956 -0.9404 3.6507 8 1 3.1798 -1.3695 3.4634 9 6 1.2036 -2.0384 4.0770 10 7 0.7114 -1.6791 5.4246 11 6 0.4649 -2.8809 6.2327 12 6 -0.4302 -3.8238 5.4706 13 8 -0.8236 -3.5244 4.3631 14 7 -0.7927 -5.0002 6.0193 15 6 -1.6065 -5.8583 5.3259 16 1 -1.9569 -5.5917 4.3397 17 6 -1.9806 -7.0709 5.8918 18 7 -1.5548 -7.3950 7.0920 19 14 -3.0902 -8.2397 4.9472 20 1 -2.4319 -8.6262 3.6734 21 1 -3.3398 -9.4542 5.7643 22 1 -4.3812 -7.5675 4.6531 23 6 1.7736 -0.8375 6.0326 24 6 2.2551 0.0366 4.8473 25 1 1.5840 0.8809 4.6897 26 6 3.6874 0.5220 5.0793 27 6 2.0399 -0.7212 -1.2493 28 6 3.4726 -0.3276 -1.6461 29 6 2.9921 -0.3572 -3.1066 30 6 1.5810 -0.0722 -2.5658 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3635 0.5138 -0.8899 34 1 1.1493 0.5388 2.5436 35 1 0.3702 -2.0784 3.3756 36 1 1.7099 -3.0031 4.1115 37 1 1.4127 -3.3742 6.4485 38 1 -0.0182 -2.5972 7.1676 39 1 -0.4771 -5.2401 6.9047 40 1 -1.8157 -8.2417 7.4869 41 1 2.5874 -1.4574 6.4088 42 1 1.3632 -0.2152 6.8277 43 1 4.0460 1.0357 4.1874 44 1 3.7060 1.2079 5.9262 45 1 4.3308 -0.3324 5.2900 46 1 1.8758 -1.7982 -1.2129 47 1 3.7638 0.6649 -1.3023 48 1 4.2150 -1.0915 -1.4152 49 1 3.0895 -1.3349 -3.5786 50 1 3.3974 0.4504 -3.7161 51 1 0.7965 -0.6299 -3.0771 52 1 1.3552 0.9901 -2.4733 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207674368.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:46 Heat of formation + Delta-G solvation = -82.012869 kcal Electronic energy + Delta-G solvation = -30155.599933 eV Core-core repulsion = 26154.111470 eV Total energy + Delta-G solvation = -4001.488463 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.55376 -40.68729 -39.62076 -38.77393 -36.12120 -35.45877 -34.16952 -33.32985 -33.18588 -30.09101 -28.63354 -27.08658 -26.84507 -26.11925 -25.54078 -24.00408 -22.40294 -21.78549 -20.93111 -20.74304 -20.25223 -19.85365 -18.16937 -17.81127 -17.62228 -16.76056 -16.59891 -16.44790 -16.16917 -16.00784 -15.70204 -15.55559 -15.33083 -14.99446 -14.54334 -14.24687 -14.04635 -13.86636 -13.56362 -13.50291 -13.38209 -13.35706 -13.21799 -13.06814 -13.03268 -12.95728 -12.67175 -12.48496 -12.47574 -12.26933 -12.15744 -12.13500 -11.84305 -11.69002 -11.51720 -11.40978 -11.23896 -11.01559 -10.63842 -10.31645 -10.08536 -10.00612 -9.39073 -8.50491 -5.99357 1.35868 1.37490 1.48766 1.66028 2.00071 2.21043 2.25362 2.81995 3.15713 3.22916 3.54043 3.59275 3.66987 3.73223 3.73661 3.97075 4.00127 4.04314 4.17635 4.29892 4.31055 4.32695 4.41572 4.44499 4.46463 4.51113 4.58993 4.69640 4.80880 4.81205 4.85582 4.88115 4.89297 4.93145 4.99179 5.03621 5.10272 5.12425 5.16600 5.19428 5.30802 5.34848 5.36750 5.41446 5.57687 5.64341 5.78182 5.90307 6.05705 6.56128 6.59218 7.08449 7.30549 7.50745 8.06987 8.66847 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010179 B = 0.002894 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.116746 B = 9674.320597 C =11819.709758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 H 0.129 0.871 4 C 0.509 3.491 5 O -0.587 6.587 6 N -0.706 5.706 7 C 0.140 3.860 8 H 0.076 0.924 9 C 0.052 3.948 10 N -0.505 5.505 11 C 0.046 3.954 12 C 0.435 3.565 13 O -0.616 6.616 14 N -0.572 5.572 15 C -0.335 4.335 16 H 0.076 0.924 17 C -0.012 4.012 18 N -0.919 5.919 19 Si 0.992 3.008 20 H -0.275 1.275 21 H -0.267 1.267 22 H -0.270 1.270 23 C 0.035 3.965 24 C -0.085 4.085 25 H 0.107 0.893 26 C -0.136 4.136 27 C -0.101 4.101 28 C -0.135 4.135 29 C -0.139 4.139 30 C -0.123 4.123 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.414 0.586 35 H 0.064 0.936 36 H 0.005 0.995 37 H 0.065 0.935 38 H 0.118 0.882 39 H 0.396 0.604 40 H 0.279 0.721 41 H 0.053 0.947 42 H 0.110 0.890 43 H 0.062 0.938 44 H 0.083 0.917 45 H 0.050 0.950 46 H 0.060 0.940 47 H 0.093 0.907 48 H 0.043 0.957 49 H 0.071 0.929 50 H 0.084 0.916 51 H 0.067 0.933 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.960 22.242 -8.982 25.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 H 0.147 0.853 4 C 0.297 3.703 5 O -0.467 6.467 6 N -0.358 5.358 7 C 0.034 3.966 8 H 0.094 0.906 9 C -0.078 4.078 10 N -0.230 5.230 11 C -0.085 4.085 12 C 0.223 3.777 13 O -0.503 6.503 14 N -0.210 5.210 15 C -0.464 4.464 16 H 0.094 0.906 17 C -0.212 4.212 18 N -0.560 5.560 19 Si 0.816 3.184 20 H -0.200 1.200 21 H -0.191 1.191 22 H -0.195 1.195 23 C -0.093 4.093 24 C -0.104 4.104 25 H 0.125 0.875 26 C -0.193 4.193 27 C -0.120 4.120 28 C -0.173 4.173 29 C -0.177 4.177 30 C -0.160 4.160 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.252 0.748 35 H 0.082 0.918 36 H 0.024 0.976 37 H 0.083 0.917 38 H 0.136 0.864 39 H 0.230 0.770 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.128 0.872 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.112 0.888 48 H 0.062 0.938 49 H 0.090 0.910 50 H 0.102 0.898 51 H 0.086 0.914 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.656 21.835 -9.680 25.763 hybrid contribution 0.041 -1.926 0.379 1.963 sum 9.697 19.910 -9.301 24.019 Atomic orbital electron populations 1.21763 0.92012 1.01810 1.04262 1.21389 0.97918 1.01173 0.90592 0.85334 1.21429 0.78977 0.84013 0.85874 1.90679 1.40254 1.28261 1.87464 1.45952 1.53308 1.31926 1.04607 1.21872 0.96051 0.92916 0.85778 0.90596 1.23025 0.96926 0.95464 0.92338 1.64611 1.40796 1.15913 1.01650 1.22027 0.98450 0.90548 0.97478 1.20809 0.85661 0.83444 0.87811 1.90484 1.60423 1.76725 1.22636 1.41910 1.44538 1.16003 1.18523 1.19593 1.26380 0.98946 1.01493 0.90594 1.26042 0.99307 0.98824 0.97023 1.69664 1.45864 1.24827 1.15650 0.85006 0.78251 0.77321 0.77865 1.20017 1.19139 1.19501 1.23557 0.92438 0.95525 0.97737 1.22324 0.99412 0.97183 0.91473 0.87533 1.21741 0.93159 1.01513 1.02927 1.22353 0.97338 0.98860 0.93429 1.22947 0.95762 1.01508 0.97041 1.22787 0.96899 1.02154 0.95814 1.22947 0.96905 1.01889 0.94281 0.94886 0.90998 0.88845 0.74810 0.91788 0.97637 0.91729 0.86427 0.76990 0.91200 0.92829 0.87172 0.91897 0.89844 0.93103 0.92136 0.88842 0.93771 0.91048 0.89754 0.91425 0.87721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.89 71.98 0.64 -1.87 16 2 C -0.09 -1.71 2.48 -11.54 -0.03 -1.74 16 3 H 0.13 1.58 7.94 -2.39 -0.02 1.56 16 4 C 0.51 14.14 7.14 87.66 0.63 14.77 16 5 O -0.59 -22.30 15.49 -3.03 -0.05 -22.35 16 6 N -0.71 -16.84 4.90 -438.37 -2.15 -18.99 16 7 C 0.14 3.85 2.92 45.87 0.13 3.99 16 8 H 0.08 2.35 7.26 -2.39 -0.02 2.33 16 9 C 0.05 1.96 4.86 86.45 0.42 2.38 16 10 N -0.51 -16.79 5.26 -887.57 -4.67 -21.46 16 11 C 0.05 1.69 5.48 85.56 0.47 2.16 16 12 C 0.44 21.81 7.36 87.66 0.64 22.45 16 13 O -0.62 -35.48 13.37 -3.05 -0.04 -35.52 16 14 N -0.57 -30.69 5.29 -306.99 -1.62 -32.31 16 15 C -0.33 -19.73 9.68 84.04 0.81 -18.92 16 16 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 17 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 18 N -0.92 -50.87 13.05 21.66 0.28 -50.58 16 19 Si 0.99 44.34 29.55 68.60 2.03 46.36 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 23 C 0.03 0.77 6.00 86.65 0.52 1.29 16 24 C -0.08 -1.60 3.37 -9.59 -0.03 -1.63 16 25 H 0.11 1.66 7.75 -2.39 -0.02 1.64 16 26 C -0.14 -1.92 9.16 71.98 0.66 -1.26 16 27 C -0.10 -2.13 2.54 -10.27 -0.03 -2.16 16 28 C -0.14 -2.58 7.60 31.12 0.24 -2.35 16 29 C -0.14 -2.13 8.08 31.12 0.25 -1.88 16 30 C -0.12 -1.79 6.68 31.12 0.21 -1.58 16 31 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 1.11 7.56 -2.39 -0.02 1.10 16 33 H 0.09 1.18 7.45 -2.39 -0.02 1.16 16 34 H 0.41 7.10 7.80 -92.71 -0.72 6.38 16 35 H 0.06 2.94 6.53 -2.39 -0.02 2.92 16 36 H 0.01 0.23 7.59 -2.39 -0.02 0.21 16 37 H 0.06 2.17 7.89 -2.38 -0.02 2.15 16 38 H 0.12 3.70 8.14 -2.39 -0.02 3.68 16 39 H 0.40 20.10 7.90 -92.70 -0.73 19.37 16 40 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 41 H 0.05 1.15 7.73 -2.39 -0.02 1.13 16 42 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.05 0.80 8.10 -2.38 -0.02 0.79 16 46 H 0.06 1.73 7.86 -2.39 -0.02 1.71 16 47 H 0.09 1.44 7.96 -2.39 -0.02 1.42 16 48 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 50 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.10 1.05 8.10 -2.39 -0.02 1.03 16 Total: -1.00 -78.29 410.15 -0.76 -79.05 By element: Atomic # 1 Polarization: 42.88 SS G_CDS: -0.54 Total: 42.35 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 6.00 Total: 13.46 kcal Atomic # 7 Polarization: -115.19 SS G_CDS: -8.16 Total: -123.35 kcal Atomic # 8 Polarization: -57.78 SS G_CDS: -0.09 Total: -57.86 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -78.29 -0.76 -79.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207674368.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.967 kcal (2) G-P(sol) polarization free energy of solvation -78.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds