Wall clock time and date at job start Tue Mar 31 2020 20:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21272 * 120.00185 * 2 1 4 4 N 1.34780 * 119.99828 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00028 * 184.45006 * 4 2 1 6 6 C 1.50696 * 109.47145 * 302.44635 * 5 4 2 7 7 O 1.21286 * 119.99738 * 144.47527 * 6 5 4 8 8 N 1.34774 * 120.00177 * 324.46992 * 6 5 4 9 9 C 1.46500 * 120.00149 * 174.95071 * 8 6 5 10 10 H 1.09007 * 110.91274 * 37.44905 * 9 8 6 11 11 C 1.54907 * 111.00511 * 273.55178 * 9 8 6 12 12 N 1.47424 * 104.83380 * 204.91842 * 11 9 8 13 13 C 1.36933 * 125.64917 * 204.09469 * 12 11 9 14 14 H 1.08005 * 119.99950 * 177.09408 * 13 12 11 15 15 C 1.38805 * 120.00333 * 357.08841 * 13 12 11 16 16 N 1.31627 * 119.99877 * 326.74894 * 15 13 12 17 17 Si 1.86793 * 120.00497 * 146.74577 * 15 13 12 18 18 H 1.48502 * 109.47349 * 270.00234 * 17 15 13 19 19 H 1.48498 * 109.47486 * 149.99954 * 17 15 13 20 20 H 1.48503 * 109.47118 * 30.00087 * 17 15 13 21 21 C 1.47021 * 108.70282 * 24.34960 * 12 11 9 22 22 C 1.54340 * 107.26687 * 358.58950 * 21 12 11 23 23 H 1.08995 * 110.51445 * 96.44805 * 22 21 12 24 24 C 1.53002 * 110.85270 * 219.67091 * 22 21 12 25 25 C 1.53006 * 109.46902 * 62.44771 * 5 4 2 26 26 C 1.53000 * 109.47109 * 59.99915 * 25 5 4 27 27 C 1.52996 * 109.47283 * 60.00307 * 26 25 5 28 28 C 1.53006 * 109.46798 * 299.99884 * 27 26 25 29 29 C 1.52996 * 109.47333 * 182.44369 * 5 4 2 30 30 H 1.08998 * 109.47153 * 239.99623 * 1 2 3 31 31 H 1.08996 * 109.47017 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.47375 * 119.99572 * 1 2 3 33 33 H 0.97007 * 120.00043 * 4.45810 * 4 2 1 34 34 H 0.96999 * 119.99766 * 354.94881 * 8 6 5 35 35 H 1.08993 * 110.37077 * 86.07460 * 11 9 8 36 36 H 1.09005 * 110.45601 * 323.79611 * 11 9 8 37 37 H 0.97004 * 119.99490 * 355.76196 * 16 15 13 38 38 H 1.09004 * 109.88521 * 118.13506 * 21 12 11 39 39 H 1.09005 * 109.88724 * 239.30270 * 21 12 11 40 40 H 1.08998 * 109.47234 * 173.68898 * 24 22 21 41 41 H 1.08999 * 109.46763 * 293.69578 * 24 22 21 42 42 H 1.09004 * 109.46504 * 53.69381 * 24 22 21 43 43 H 1.09003 * 109.47157 * 180.02562 * 25 5 4 44 44 H 1.09002 * 109.46689 * 299.99619 * 25 5 4 45 45 H 1.08998 * 109.46632 * 299.99855 * 26 25 5 46 46 H 1.09004 * 109.46881 * 180.02562 * 26 25 5 47 47 H 1.09000 * 109.47136 * 180.02562 * 27 26 25 48 48 H 1.08994 * 109.47304 * 59.99838 * 27 26 25 49 49 H 1.09003 * 109.47157 * 299.99799 * 28 27 26 50 50 H 1.09002 * 109.46689 * 180.02562 * 28 27 26 51 51 H 1.09004 * 109.47042 * 60.00209 * 29 5 4 52 52 H 1.08998 * 109.47655 * 180.02562 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6425 -1.1693 0.0979 6 6 4.2233 -0.3612 -1.0338 7 8 5.2225 0.3024 -0.8546 8 7 3.6324 -0.3761 -2.2450 9 6 4.1304 0.4935 -3.3137 10 1 5.2177 0.5647 -3.2825 11 6 3.4796 1.8971 -3.2361 12 7 3.5559 2.4250 -4.6104 13 6 3.5472 3.7494 -4.9583 14 1 3.6548 4.0364 -5.9939 15 6 3.3999 4.7230 -3.9799 16 7 2.6581 4.4833 -2.9193 17 14 4.2545 6.3732 -4.1684 18 1 5.6021 6.3066 -3.5480 19 1 3.4516 7.4261 -3.4960 20 1 4.3892 6.6991 -5.6109 21 6 3.6367 1.2938 -5.5461 22 6 3.6450 0.0013 -4.7027 23 1 2.6407 -0.4166 -4.6344 24 6 4.6207 -1.0230 -5.2855 25 6 4.0645 -0.5534 1.4335 26 6 3.4748 -1.3738 2.5824 27 6 3.9897 -2.8121 2.4988 28 6 3.5676 -3.4280 1.1633 29 6 4.1573 -2.6076 0.0143 30 1 -0.3633 -0.5139 0.8899 31 1 -0.3633 1.0276 0.0005 32 1 -0.3634 -0.5138 -0.8900 33 1 1.6980 -2.0060 -0.0662 34 1 2.8775 -0.9626 -2.4091 35 1 4.0377 2.5367 -2.5525 36 1 2.4402 1.8179 -2.9173 37 1 2.1652 3.6507 -2.8504 38 1 2.7725 1.2998 -6.2105 39 1 4.5554 1.3597 -6.1291 40 1 4.6930 -1.8788 -4.6143 41 1 4.2607 -1.3544 -6.2595 42 1 5.6036 -0.5654 -5.3979 43 1 5.1521 -0.5544 1.5065 44 1 3.6978 0.4713 1.4930 45 1 2.3873 -1.3722 2.5091 46 1 3.7751 -0.9347 3.5338 47 1 3.5692 -3.3967 3.3171 48 1 5.0771 -2.8136 2.5721 49 1 2.4801 -3.4265 1.0900 50 1 3.9341 -4.4528 1.1039 51 1 3.8567 -3.0464 -0.9371 52 1 5.2448 -2.6092 0.0880 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207736672.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:01 Heat of formation + Delta-G solvation = -60.400787 kcal Electronic energy + Delta-G solvation = -32327.809152 eV Core-core repulsion = 28327.257859 eV Total energy + Delta-G solvation = -4000.551293 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.10311 -38.87484 -38.06262 -37.16829 -34.22195 -33.72303 -32.62697 -31.06308 -30.98405 -30.24803 -28.69808 -27.79718 -25.40245 -24.25674 -23.04235 -22.90358 -21.18360 -20.67344 -20.10194 -19.69937 -18.97614 -17.51159 -17.18207 -17.11740 -16.21586 -15.70682 -15.22538 -14.78742 -14.44726 -14.31171 -14.21779 -13.99103 -13.69331 -13.58568 -13.38431 -12.98675 -12.91798 -12.83599 -12.76089 -12.46880 -12.44267 -12.38410 -12.18553 -12.08154 -11.72938 -11.40731 -11.36796 -10.87534 -10.82044 -10.75589 -10.57212 -10.55836 -10.47462 -10.26057 -9.98458 -9.89375 -9.81412 -9.62047 -9.52426 -8.87837 -8.50226 -8.18225 -6.84121 -6.00458 -2.89941 2.70406 2.81083 3.18523 3.48969 3.61725 3.68015 3.81820 4.42415 4.46759 4.51450 4.72041 4.80283 4.89059 4.96480 5.02739 5.10013 5.17784 5.23011 5.24043 5.25702 5.32176 5.33616 5.35313 5.45111 5.50311 5.66689 5.73557 5.74669 5.83573 5.85495 5.86890 5.89876 5.94219 6.01806 6.07058 6.11538 6.14205 6.29641 6.35056 6.37020 6.41309 6.63724 6.75174 6.89430 7.18666 7.32220 7.43279 7.87121 7.90830 8.30120 8.58307 8.63834 9.14316 9.98028 10.51392 11.35937 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013466 B = 0.003990 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.778516 B = 7015.065280 C = 7814.483419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.500 3.500 3 O -0.501 6.501 4 N -0.730 5.730 5 C 0.169 3.831 6 C 0.523 3.477 7 O -0.529 6.529 8 N -0.709 5.709 9 C 0.131 3.869 10 H 0.091 0.909 11 C 0.147 3.853 12 N -0.605 5.605 13 C -0.354 4.354 14 H 0.070 0.930 15 C -0.019 4.019 16 N -0.904 5.904 17 Si 1.059 2.941 18 H -0.293 1.293 19 H -0.291 1.291 20 H -0.293 1.293 21 C 0.146 3.854 22 C -0.110 4.110 23 H 0.072 0.928 24 C -0.136 4.136 25 C -0.116 4.116 26 C -0.114 4.114 27 C -0.121 4.121 28 C -0.115 4.115 29 C -0.118 4.118 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.399 0.601 34 H 0.390 0.610 35 H 0.061 0.939 36 H 0.022 0.978 37 H 0.272 0.728 38 H 0.021 0.979 39 H 0.029 0.971 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.063 0.937 50 H 0.068 0.932 51 H 0.073 0.927 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.168 -22.547 8.435 24.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.286 3.714 3 O -0.373 6.373 4 N -0.388 5.388 5 C 0.079 3.921 6 C 0.307 3.693 7 O -0.404 6.404 8 N -0.359 5.359 9 C 0.026 3.974 10 H 0.109 0.891 11 C 0.021 3.979 12 N -0.333 5.333 13 C -0.480 4.480 14 H 0.088 0.912 15 C -0.222 4.222 16 N -0.544 5.544 17 Si 0.889 3.111 18 H -0.221 1.221 19 H -0.218 1.218 20 H -0.220 1.220 21 C 0.019 3.981 22 C -0.130 4.130 23 H 0.090 0.910 24 C -0.193 4.193 25 C -0.155 4.155 26 C -0.152 4.152 27 C -0.159 4.159 28 C -0.153 4.153 29 C -0.156 4.156 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.234 0.766 34 H 0.224 0.776 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.083 0.917 38 H 0.039 0.961 39 H 0.047 0.953 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.083 0.917 49 H 0.082 0.918 50 H 0.087 0.913 51 H 0.091 0.909 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.723 -19.644 9.262 21.786 hybrid contribution -1.074 -2.140 -1.007 2.598 sum -2.798 -21.785 8.255 23.464 Atomic orbital electron populations 1.21907 0.91635 1.05922 1.03688 1.20917 0.90692 0.83613 0.76162 1.90914 1.70039 1.30731 1.45640 1.46226 1.05949 1.09150 1.77489 1.20485 0.80576 0.96066 0.94968 1.20438 0.83988 0.81588 0.83290 1.90713 1.25474 1.41785 1.82426 1.45724 1.35114 1.43239 1.11803 1.22361 0.99332 0.91309 0.84394 0.89054 1.21759 0.97154 0.90798 0.88225 1.44484 1.87437 1.01388 0.99952 1.19677 1.52432 0.80628 0.95287 0.91192 1.25638 0.99053 1.02793 0.94685 1.70755 1.24206 1.26447 1.33014 0.83614 0.76829 0.75870 0.74770 1.22080 1.21773 1.21985 1.21283 0.98311 0.85887 0.92580 1.22417 0.98768 0.96536 0.95245 0.90996 1.21723 0.99385 0.98117 1.00097 1.21724 1.01916 1.00733 0.91087 1.21494 1.00566 0.94871 0.98262 1.21573 1.01286 0.96160 0.96842 1.21513 1.00602 0.98778 0.94367 1.21777 1.02293 0.91955 0.99605 0.89739 0.88672 0.89623 0.76573 0.77640 0.92083 0.96060 0.91659 0.96083 0.95337 0.93108 0.92726 0.92351 0.90149 0.89684 0.92003 0.91733 0.91953 0.91726 0.91821 0.91327 0.90868 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 10.32 36.00 0.37 -1.26 16 2 C 0.50 6.74 7.14 -10.99 -0.08 6.66 16 3 O -0.50 -10.10 14.41 5.56 0.08 -10.02 16 4 N -0.73 -7.29 3.41 -48.69 -0.17 -7.45 16 5 C 0.17 2.07 0.58 -132.97 -0.08 1.99 16 6 C 0.52 9.16 5.07 -10.99 -0.06 9.10 16 7 O -0.53 -11.85 15.80 5.55 0.09 -11.77 16 8 N -0.71 -11.72 4.87 -51.73 -0.25 -11.98 16 9 C 0.13 2.66 2.81 -65.78 -0.18 2.47 16 10 H 0.09 2.04 7.57 -51.93 -0.39 1.64 16 11 C 0.15 3.85 4.87 -2.53 -0.01 3.84 16 12 N -0.60 -16.53 3.38 -170.06 -0.57 -17.11 16 13 C -0.35 -10.70 10.02 -15.06 -0.15 -10.85 16 14 H 0.07 2.09 8.01 -52.48 -0.42 1.67 16 15 C -0.02 -0.58 5.02 -17.43 -0.09 -0.67 16 16 N -0.90 -29.63 12.64 55.49 0.70 -28.92 16 17 Si 1.06 27.44 30.03 -169.99 -5.10 22.34 16 18 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 19 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 C 0.15 3.18 6.85 -3.06 -0.02 3.15 16 22 C -0.11 -1.90 3.16 -88.78 -0.28 -2.18 16 23 H 0.07 1.14 8.00 -51.93 -0.42 0.72 16 24 C -0.14 -1.86 9.16 37.16 0.34 -1.52 16 25 C -0.12 -1.56 4.08 -26.73 -0.11 -1.67 16 26 C -0.11 -1.09 5.77 -26.73 -0.15 -1.25 16 27 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 28 C -0.11 -0.72 5.75 -26.73 -0.15 -0.88 16 29 C -0.12 -1.02 4.77 -26.73 -0.13 -1.15 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 1.09 8.12 -51.93 -0.42 0.67 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.40 2.44 7.24 -40.82 -0.30 2.14 16 34 H 0.39 5.22 7.98 -40.82 -0.33 4.90 16 35 H 0.06 1.91 7.28 -51.93 -0.38 1.53 16 36 H 0.02 0.60 7.17 -51.93 -0.37 0.23 16 37 H 0.27 8.99 5.97 -40.82 -0.24 8.75 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.03 0.62 7.77 -51.93 -0.40 0.21 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.85 8.07 -51.93 -0.42 0.43 16 43 H 0.08 1.15 7.87 -51.93 -0.41 0.74 16 44 H 0.08 1.48 6.51 -51.93 -0.34 1.14 16 45 H 0.06 0.57 7.60 -51.93 -0.39 0.17 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.06 0.32 6.81 -51.93 -0.35 -0.03 16 50 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 51 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 52 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 398.69 15.07 6.01 6.01 Total: -1.00 -39.56 398.69 -9.19 -48.75 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -9.03 Total: 5.39 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -0.94 Total: 4.75 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: -0.29 Total: -65.46 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.17 Total: -21.78 kcal Atomic # 14 Polarization: 27.44 SS G_CDS: -5.10 Total: 22.34 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -39.56 -9.19 -48.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207736672.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.653 kcal (2) G-P(sol) polarization free energy of solvation -39.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds