Wall clock time and date at job start Tue Mar 31 2020 20:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21272 * 120.00185 * 2 1 4 4 N 1.34780 * 119.99828 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00028 * 184.45006 * 4 2 1 6 6 C 1.50696 * 109.47145 * 302.44635 * 5 4 2 7 7 O 1.21286 * 119.99738 * 144.47527 * 6 5 4 8 8 N 1.34774 * 120.00177 * 324.46992 * 6 5 4 9 9 C 1.46500 * 120.00149 * 174.95071 * 8 6 5 10 10 H 1.09007 * 110.91274 * 37.44905 * 9 8 6 11 11 C 1.54907 * 111.00511 * 273.55178 * 9 8 6 12 12 N 1.47424 * 104.83380 * 204.91842 * 11 9 8 13 13 C 1.36933 * 125.64917 * 204.09469 * 12 11 9 14 14 H 1.08005 * 119.99950 * 177.09408 * 13 12 11 15 15 C 1.38805 * 120.00333 * 357.08841 * 13 12 11 16 16 N 1.31627 * 119.99877 * 326.74894 * 15 13 12 17 17 Si 1.86793 * 120.00497 * 146.74577 * 15 13 12 18 18 H 1.48502 * 109.47349 * 270.00234 * 17 15 13 19 19 H 1.48498 * 109.47486 * 149.99954 * 17 15 13 20 20 H 1.48503 * 109.47118 * 30.00087 * 17 15 13 21 21 C 1.47021 * 108.70282 * 24.34960 * 12 11 9 22 22 C 1.54340 * 107.26687 * 358.58950 * 21 12 11 23 23 H 1.08995 * 110.51445 * 96.44805 * 22 21 12 24 24 C 1.53002 * 110.85270 * 219.67091 * 22 21 12 25 25 C 1.53006 * 109.46902 * 62.44771 * 5 4 2 26 26 C 1.53000 * 109.47109 * 59.99915 * 25 5 4 27 27 C 1.52996 * 109.47283 * 60.00307 * 26 25 5 28 28 C 1.53006 * 109.46798 * 299.99884 * 27 26 25 29 29 C 1.52996 * 109.47333 * 182.44369 * 5 4 2 30 30 H 1.08998 * 109.47153 * 239.99623 * 1 2 3 31 31 H 1.08996 * 109.47017 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.47375 * 119.99572 * 1 2 3 33 33 H 0.97007 * 120.00043 * 4.45810 * 4 2 1 34 34 H 0.96999 * 119.99766 * 354.94881 * 8 6 5 35 35 H 1.08993 * 110.37077 * 86.07460 * 11 9 8 36 36 H 1.09005 * 110.45601 * 323.79611 * 11 9 8 37 37 H 0.97004 * 119.99490 * 355.76196 * 16 15 13 38 38 H 1.09004 * 109.88521 * 118.13506 * 21 12 11 39 39 H 1.09005 * 109.88724 * 239.30270 * 21 12 11 40 40 H 1.08998 * 109.47234 * 173.68898 * 24 22 21 41 41 H 1.08999 * 109.46763 * 293.69578 * 24 22 21 42 42 H 1.09004 * 109.46504 * 53.69381 * 24 22 21 43 43 H 1.09003 * 109.47157 * 180.02562 * 25 5 4 44 44 H 1.09002 * 109.46689 * 299.99619 * 25 5 4 45 45 H 1.08998 * 109.46632 * 299.99855 * 26 25 5 46 46 H 1.09004 * 109.46881 * 180.02562 * 26 25 5 47 47 H 1.09000 * 109.47136 * 180.02562 * 27 26 25 48 48 H 1.08994 * 109.47304 * 59.99838 * 27 26 25 49 49 H 1.09003 * 109.47157 * 299.99799 * 28 27 26 50 50 H 1.09002 * 109.46689 * 180.02562 * 28 27 26 51 51 H 1.09004 * 109.47042 * 60.00209 * 29 5 4 52 52 H 1.08998 * 109.47655 * 180.02562 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6425 -1.1693 0.0979 6 6 4.2233 -0.3612 -1.0338 7 8 5.2225 0.3024 -0.8546 8 7 3.6324 -0.3761 -2.2450 9 6 4.1304 0.4935 -3.3137 10 1 5.2177 0.5647 -3.2825 11 6 3.4796 1.8971 -3.2361 12 7 3.5559 2.4250 -4.6104 13 6 3.5472 3.7494 -4.9583 14 1 3.6548 4.0364 -5.9939 15 6 3.3999 4.7230 -3.9799 16 7 2.6581 4.4833 -2.9193 17 14 4.2545 6.3732 -4.1684 18 1 5.6021 6.3066 -3.5480 19 1 3.4516 7.4261 -3.4960 20 1 4.3892 6.6991 -5.6109 21 6 3.6367 1.2938 -5.5461 22 6 3.6450 0.0013 -4.7027 23 1 2.6407 -0.4166 -4.6344 24 6 4.6207 -1.0230 -5.2855 25 6 4.0645 -0.5534 1.4335 26 6 3.4748 -1.3738 2.5824 27 6 3.9897 -2.8121 2.4988 28 6 3.5676 -3.4280 1.1633 29 6 4.1573 -2.6076 0.0143 30 1 -0.3633 -0.5139 0.8899 31 1 -0.3633 1.0276 0.0005 32 1 -0.3634 -0.5138 -0.8900 33 1 1.6980 -2.0060 -0.0662 34 1 2.8775 -0.9626 -2.4091 35 1 4.0377 2.5367 -2.5525 36 1 2.4402 1.8179 -2.9173 37 1 2.1652 3.6507 -2.8504 38 1 2.7725 1.2998 -6.2105 39 1 4.5554 1.3597 -6.1291 40 1 4.6930 -1.8788 -4.6143 41 1 4.2607 -1.3544 -6.2595 42 1 5.6036 -0.5654 -5.3979 43 1 5.1521 -0.5544 1.5065 44 1 3.6978 0.4713 1.4930 45 1 2.3873 -1.3722 2.5091 46 1 3.7751 -0.9347 3.5338 47 1 3.5692 -3.3967 3.3171 48 1 5.0771 -2.8136 2.5721 49 1 2.4801 -3.4265 1.0900 50 1 3.9341 -4.4528 1.1039 51 1 3.8567 -3.0464 -0.9371 52 1 5.2448 -2.6092 0.0880 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207736672.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:00 Heat of formation + Delta-G solvation = -91.097540 kcal Electronic energy + Delta-G solvation = -32329.140263 eV Core-core repulsion = 28327.257859 eV Total energy + Delta-G solvation = -4001.882404 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.27095 -40.39642 -39.42881 -38.49024 -35.95368 -35.04978 -34.25366 -32.18967 -31.96193 -31.83495 -29.77540 -29.43799 -27.23774 -25.85519 -24.38454 -23.73548 -22.45235 -22.04533 -21.73408 -21.11200 -20.09383 -19.69828 -18.52212 -18.09015 -17.66895 -16.88804 -16.41857 -16.25724 -15.98082 -15.72328 -15.65110 -15.34061 -15.10869 -14.88912 -14.70414 -14.56956 -14.47954 -14.13663 -13.81768 -13.68663 -13.53426 -13.33157 -13.23778 -13.06839 -13.03230 -12.93333 -12.79521 -12.47907 -12.24137 -12.13502 -12.10835 -11.91398 -11.80277 -11.69722 -11.65633 -11.50663 -11.27176 -11.03370 -10.77865 -10.52838 -10.15606 -10.07036 -9.11356 -8.46974 -5.30836 1.44417 1.47455 1.58310 1.66039 1.74574 1.99951 2.24973 2.57928 3.10783 3.38883 3.46680 3.57696 3.60067 3.74540 3.83072 3.89422 3.90975 4.11244 4.19097 4.20411 4.28055 4.41118 4.43328 4.46820 4.47838 4.50672 4.62246 4.65750 4.74012 4.76105 4.91350 4.93961 4.97595 5.00184 5.01482 5.05865 5.11294 5.14048 5.15597 5.19622 5.27795 5.32666 5.35522 5.39961 5.47881 5.52266 5.59443 6.21496 6.45853 6.59362 6.78798 7.20921 7.32624 7.65907 8.23249 8.90485 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013466 B = 0.003990 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.778516 B = 7015.065280 C = 7814.483419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.494 3.506 3 O -0.580 6.580 4 N -0.703 5.703 5 C 0.178 3.822 6 C 0.513 3.487 7 O -0.589 6.589 8 N -0.694 5.694 9 C 0.147 3.853 10 H 0.067 0.933 11 C 0.167 3.833 12 N -0.629 5.629 13 C -0.361 4.361 14 H 0.073 0.927 15 C -0.079 4.079 16 N -0.939 5.939 17 Si 1.113 2.887 18 H -0.294 1.294 19 H -0.291 1.291 20 H -0.259 1.259 21 C 0.136 3.864 22 C -0.088 4.088 23 H 0.098 0.902 24 C -0.127 4.127 25 C -0.115 4.115 26 C -0.106 4.106 27 C -0.119 4.119 28 C -0.108 4.108 29 C -0.113 4.113 30 H 0.125 0.875 31 H 0.067 0.933 32 H 0.116 0.884 33 H 0.426 0.574 34 H 0.410 0.590 35 H -0.009 1.009 36 H -0.004 1.004 37 H 0.254 0.746 38 H 0.029 0.971 39 H 0.035 0.965 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.045 0.955 43 H 0.059 0.941 44 H 0.033 0.967 45 H 0.072 0.928 46 H 0.060 0.940 47 H 0.086 0.914 48 H 0.057 0.943 49 H 0.086 0.914 50 H 0.095 0.905 51 H 0.099 0.901 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.424 -27.248 7.528 28.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.283 3.717 3 O -0.458 6.458 4 N -0.362 5.362 5 C 0.088 3.912 6 C 0.300 3.700 7 O -0.468 6.468 8 N -0.345 5.345 9 C 0.040 3.960 10 H 0.085 0.915 11 C 0.039 3.961 12 N -0.357 5.357 13 C -0.488 4.488 14 H 0.091 0.909 15 C -0.276 4.276 16 N -0.581 5.581 17 Si 0.937 3.063 18 H -0.222 1.222 19 H -0.218 1.218 20 H -0.183 1.183 21 C 0.011 3.989 22 C -0.108 4.108 23 H 0.116 0.884 24 C -0.184 4.184 25 C -0.154 4.154 26 C -0.144 4.144 27 C -0.156 4.156 28 C -0.145 4.145 29 C -0.151 4.151 30 H 0.143 0.857 31 H 0.086 0.914 32 H 0.134 0.866 33 H 0.266 0.734 34 H 0.247 0.753 35 H 0.009 0.991 36 H 0.014 0.986 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.053 0.947 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.052 0.948 45 H 0.090 0.910 46 H 0.079 0.921 47 H 0.105 0.895 48 H 0.076 0.924 49 H 0.105 0.895 50 H 0.113 0.887 51 H 0.117 0.883 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.035 -24.476 8.312 26.026 hybrid contribution -0.678 -0.640 -0.729 1.183 sum -3.713 -25.115 7.583 26.496 Atomic orbital electron populations 1.21918 0.88051 1.05282 1.07043 1.21771 0.92444 0.83131 0.74379 1.90923 1.71778 1.33757 1.49333 1.45967 1.04883 1.09568 1.75784 1.20363 0.81609 0.97659 0.91578 1.21560 0.83140 0.80998 0.84305 1.90679 1.28415 1.44373 1.83326 1.45510 1.35495 1.42490 1.10973 1.21898 0.97492 0.88951 0.87661 0.91479 1.21401 0.94968 0.93135 0.86565 1.44782 1.87299 1.02128 1.01506 1.20024 1.50949 0.82460 0.95415 0.90868 1.27157 0.99187 1.06862 0.94379 1.70885 1.26465 1.25980 1.34738 0.82924 0.75156 0.71629 0.76635 1.22174 1.21755 1.18335 1.21597 0.98651 0.86139 0.92548 1.22375 1.01313 0.95415 0.91662 0.88365 1.21690 0.97487 0.97356 1.01907 1.21657 1.00776 0.99021 0.93920 1.21466 1.00871 0.96066 0.96001 1.21586 1.01041 0.94274 0.98729 1.21551 1.01900 0.99171 0.91915 1.21854 1.01799 0.89036 1.02420 0.85691 0.91419 0.86605 0.73352 0.75283 0.99064 0.98614 0.93582 0.95255 0.94697 0.90520 0.89859 0.93537 0.92189 0.94849 0.90973 0.92106 0.89549 0.92391 0.89508 0.88676 0.88286 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 10.32 71.23 0.74 -2.11 16 2 C 0.49 13.46 7.14 87.66 0.63 14.09 16 3 O -0.58 -25.57 14.41 -3.01 -0.04 -25.61 16 4 N -0.70 -12.78 3.41 -426.34 -1.46 -14.23 16 5 C 0.18 4.34 0.58 2.86 0.00 4.35 16 6 C 0.51 18.88 5.07 87.66 0.44 19.33 16 7 O -0.59 -28.88 15.80 -3.05 -0.05 -28.92 16 8 N -0.69 -23.21 4.87 -435.96 -2.12 -25.33 16 9 C 0.15 6.14 2.81 46.38 0.13 6.27 16 10 H 0.07 3.16 7.57 -2.38 -0.02 3.14 16 11 C 0.17 9.37 4.87 86.85 0.42 9.80 16 12 N -0.63 -35.85 3.38 -691.96 -2.34 -38.19 16 13 C -0.36 -22.64 10.02 84.03 0.84 -21.80 16 14 H 0.07 4.45 8.01 -2.91 -0.02 4.42 16 15 C -0.08 -5.13 5.02 84.86 0.43 -4.71 16 16 N -0.94 -65.72 12.64 21.65 0.27 -65.44 16 17 Si 1.11 57.51 30.03 68.60 2.06 59.57 16 18 H -0.29 -15.13 7.11 99.48 0.71 -14.43 16 19 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 20 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 21 C 0.14 5.85 6.85 86.73 0.59 6.44 16 22 C -0.09 -2.89 3.16 -9.60 -0.03 -2.92 16 23 H 0.10 2.75 8.00 -2.39 -0.02 2.73 16 24 C -0.13 -3.02 9.16 71.98 0.66 -2.36 16 25 C -0.11 -3.31 4.08 30.60 0.12 -3.18 16 26 C -0.11 -1.95 5.77 30.59 0.18 -1.77 16 27 C -0.12 -1.36 5.92 30.59 0.18 -1.18 16 28 C -0.11 -0.83 5.75 30.60 0.18 -0.65 16 29 C -0.11 -1.62 4.77 30.59 0.15 -1.48 16 30 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.60 8.12 -2.39 -0.02 1.58 16 32 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.43 3.23 7.24 -92.70 -0.67 2.56 16 34 H 0.41 10.18 7.98 -92.71 -0.74 9.44 16 35 H -0.01 -0.64 7.28 -2.39 -0.02 -0.66 16 36 H 0.00 -0.23 7.17 -2.38 -0.02 -0.25 16 37 H 0.25 18.22 5.97 -92.71 -0.55 17.66 16 38 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.04 1.47 7.77 -2.38 -0.02 1.45 16 40 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.05 1.24 8.07 -2.38 -0.02 1.22 16 43 H 0.06 1.91 7.87 -2.39 -0.02 1.89 16 44 H 0.03 1.30 6.51 -2.39 -0.02 1.28 16 45 H 0.07 1.17 7.60 -2.39 -0.02 1.15 16 46 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.09 0.32 6.81 -2.39 -0.02 0.30 16 50 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 51 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -101.83 398.69 1.70 -100.13 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -0.28 Total: 19.93 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: 5.66 Total: 18.11 kcal Atomic # 7 Polarization: -137.55 SS G_CDS: -5.64 Total: -143.20 kcal Atomic # 8 Polarization: -54.45 SS G_CDS: -0.09 Total: -54.54 kcal Atomic # 14 Polarization: 57.51 SS G_CDS: 2.06 Total: 59.57 kcal Total: -101.83 1.70 -100.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207736672.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.031 kcal (2) G-P(sol) polarization free energy of solvation -101.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds