Wall clock time and date at job start Tue Mar 31 2020 20:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21273 * 120.00231 * 2 1 4 4 N 1.34778 * 119.99573 * 179.97438 * 2 1 3 5 5 C 1.46501 * 119.99505 * 185.32913 * 4 2 1 6 6 H 1.09000 * 109.47512 * 24.35267 * 5 4 2 7 7 C 1.50699 * 109.47252 * 144.35866 * 5 4 2 8 8 O 1.21288 * 119.99671 * 13.69804 * 7 5 4 9 9 N 1.34771 * 120.00377 * 193.69529 * 7 5 4 10 10 C 1.46497 * 120.00158 * 184.93109 * 9 7 5 11 11 H 1.08998 * 110.63925 * 31.86388 * 10 9 7 12 12 C 1.54336 * 111.00501 * 268.78092 * 10 9 7 13 13 N 1.47019 * 107.26605 * 219.60041 * 12 10 9 14 14 C 1.36934 * 125.64546 * 178.84714 * 13 12 10 15 15 H 1.08004 * 119.99832 * 177.61620 * 14 13 12 16 16 C 1.38808 * 120.00268 * 357.61689 * 14 13 12 17 17 N 1.31620 * 120.00404 * 209.00678 * 16 14 13 18 18 Si 1.86808 * 119.99744 * 29.01233 * 16 14 13 19 19 H 1.48500 * 109.46944 * 275.36722 * 18 16 14 20 20 H 1.48499 * 109.46879 * 35.36912 * 18 16 14 21 21 H 1.48493 * 109.47010 * 155.37040 * 18 16 14 22 22 C 1.47425 * 108.70265 * 358.58670 * 13 12 10 23 23 C 1.54906 * 104.83536 * 24.35819 * 22 13 12 24 24 H 1.08993 * 111.01146 * 81.06147 * 23 22 13 25 25 C 1.52993 * 111.00461 * 204.91698 * 23 22 13 26 26 C 1.53001 * 109.46998 * 264.35840 * 5 4 2 27 27 C 1.54266 * 110.03692 * 59.14033 * 26 5 4 28 28 C 1.54970 * 104.16105 * 217.13923 * 27 26 5 29 29 C 1.54889 * 102.77571 * 37.88639 * 28 27 26 30 30 C 1.53878 * 110.03143 * 301.92195 * 26 5 4 31 31 H 1.09001 * 109.47150 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46892 * 300.00389 * 1 2 3 33 33 H 1.09000 * 109.46861 * 60.00331 * 1 2 3 34 34 H 0.97001 * 120.00405 * 5.33019 * 4 2 1 35 35 H 0.97001 * 119.99722 * 4.93706 * 9 7 5 36 36 H 1.08997 * 109.99155 * 100.12445 * 12 10 9 37 37 H 1.08999 * 109.77626 * 338.96278 * 12 10 9 38 38 H 0.97004 * 119.99707 * 354.96870 * 17 16 14 39 39 H 1.09005 * 110.36380 * 143.19535 * 22 13 12 40 40 H 1.08991 * 110.36584 * 265.40161 * 22 13 12 41 41 H 1.09004 * 109.47274 * 58.54463 * 25 23 22 42 42 H 1.09008 * 109.47585 * 178.54188 * 25 23 22 43 43 H 1.09001 * 109.47278 * 298.54104 * 25 23 22 44 44 H 1.09000 * 110.01889 * 180.53317 * 26 5 4 45 45 H 1.09002 * 110.48152 * 335.78362 * 27 26 5 46 46 H 1.08995 * 110.48771 * 98.42381 * 27 26 5 47 47 H 1.08994 * 110.71602 * 279.56695 * 28 27 26 48 48 H 1.09001 * 110.91666 * 156.29363 * 28 27 26 49 49 H 1.09004 * 110.48270 * 203.40439 * 29 28 27 50 50 H 1.08994 * 110.48462 * 80.76379 * 29 28 27 51 51 H 1.08995 * 110.03513 * 238.56876 * 30 26 5 52 52 H 1.09001 * 110.03440 * 0.02562 * 30 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6411 -1.1699 0.1184 6 1 3.9675 -0.2549 0.6126 7 6 4.0775 -2.3623 0.9300 8 8 3.2951 -3.2612 1.1560 9 7 5.3369 -2.4300 1.4048 10 6 5.7937 -3.6356 2.1006 11 1 5.3000 -4.5209 1.6997 12 6 5.5512 -3.5225 3.6206 13 7 6.7195 -4.1087 4.2936 14 6 6.9058 -4.1835 5.6482 15 1 7.7842 -4.6696 6.0464 16 6 5.9656 -3.6348 6.5095 17 7 6.3375 -3.1836 7.6887 18 14 4.1725 -3.5369 5.9950 19 1 3.9548 -2.3078 5.1904 20 1 3.8253 -4.7294 5.1810 21 1 3.3121 -3.4955 7.2045 22 6 7.6542 -4.6081 3.2688 23 6 7.3359 -3.7752 2.0021 24 1 7.8199 -2.7996 2.0440 25 6 7.7383 -4.5305 0.7338 26 6 4.2652 -1.2465 -1.2765 27 6 3.8096 -0.0423 -2.1262 28 6 3.6328 -0.6281 -3.5500 29 6 3.0373 -2.0306 -3.2718 30 6 3.7748 -2.5103 -2.0047 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.6990 -2.0055 -0.0771 35 1 5.9410 -1.6804 1.2859 36 1 4.6507 -4.0713 3.8961 37 1 5.4492 -2.4741 3.9007 38 1 7.2535 -3.3003 7.9858 39 1 8.6849 -4.4425 3.5826 40 1 7.4811 -5.6677 3.0817 41 1 7.2085 -5.4823 0.6942 42 1 7.4802 -3.9343 -0.1415 43 1 8.8129 -4.7130 0.7451 44 1 5.3524 -1.2586 -1.1987 45 1 2.8627 0.3500 -1.7550 46 1 4.5727 0.7360 -2.1250 47 1 4.5951 -0.7102 -4.0553 48 1 2.9406 -0.0238 -4.1363 49 1 3.2370 -2.7023 -4.1068 50 1 1.9657 -1.9599 -3.0857 51 1 4.6240 -3.1352 -2.2810 52 1 3.0919 -3.0688 -1.3645 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207920929.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:37 Heat of formation + Delta-G solvation = -55.427986 kcal Electronic energy + Delta-G solvation = -31410.984380 eV Core-core repulsion = 27410.648725 eV Total energy + Delta-G solvation = -4000.335656 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.00636 -39.43149 -38.18499 -37.57008 -34.48556 -34.18854 -32.85014 -31.31206 -31.02122 -29.18086 -28.89212 -28.10171 -26.07447 -25.64088 -23.14755 -21.31652 -21.07221 -20.75221 -20.53977 -20.03532 -19.40267 -17.67908 -17.44479 -17.09574 -16.65659 -16.09094 -15.83969 -15.37213 -15.26573 -14.90764 -14.34975 -14.24677 -13.89308 -13.55548 -13.38572 -13.33795 -13.23479 -13.07953 -12.95726 -12.77252 -12.65142 -12.29657 -12.01723 -11.75881 -11.63016 -11.36435 -11.29268 -11.21477 -11.13757 -11.03245 -10.82509 -10.76105 -10.71945 -10.53225 -10.12613 -10.08937 -9.92683 -9.65781 -9.32429 -9.19515 -8.78668 -8.39197 -7.07112 -6.36356 -3.14350 2.35639 2.57093 2.77896 3.35731 3.46657 3.54445 3.69704 4.27106 4.35095 4.46009 4.60122 4.61825 4.64999 4.82332 4.93573 4.94581 4.98368 5.08980 5.17055 5.18857 5.24096 5.29778 5.31312 5.37182 5.46420 5.47714 5.52301 5.59394 5.66327 5.69629 5.70148 5.71702 5.83249 5.87082 5.93865 6.03851 6.05552 6.08322 6.18410 6.20061 6.22253 6.33465 6.45528 6.53514 6.73700 6.81032 7.30203 7.49189 7.68098 8.00001 8.16698 8.33280 9.03998 9.60356 10.25553 11.15048 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013183 B = 0.003749 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.451153 B = 7466.032585 C = 8948.350580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.515 3.485 3 O -0.544 6.544 4 N -0.706 5.706 5 C 0.129 3.871 6 H 0.116 0.884 7 C 0.511 3.489 8 O -0.535 6.535 9 N -0.710 5.710 10 C 0.140 3.860 11 H 0.097 0.903 12 C 0.095 3.905 13 N -0.609 5.609 14 C -0.335 4.335 15 H 0.081 0.919 16 C -0.018 4.018 17 N -0.915 5.915 18 Si 1.066 2.934 19 H -0.296 1.296 20 H -0.291 1.291 21 H -0.299 1.299 22 C 0.143 3.857 23 C -0.112 4.112 24 H 0.082 0.918 25 C -0.137 4.137 26 C -0.095 4.095 27 C -0.124 4.124 28 C -0.124 4.124 29 C -0.120 4.120 30 C -0.123 4.123 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.410 0.590 35 H 0.401 0.599 36 H 0.043 0.957 37 H 0.045 0.955 38 H 0.263 0.737 39 H 0.049 0.951 40 H 0.024 0.976 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.064 0.936 47 H 0.064 0.936 48 H 0.063 0.937 49 H 0.062 0.938 50 H 0.062 0.938 51 H 0.065 0.935 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.489 3.998 -24.727 25.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.303 3.697 3 O -0.422 6.422 4 N -0.360 5.360 5 C 0.020 3.980 6 H 0.133 0.867 7 C 0.296 3.704 8 O -0.411 6.411 9 N -0.360 5.360 10 C 0.036 3.964 11 H 0.115 0.885 12 C -0.031 4.031 13 N -0.337 5.337 14 C -0.462 4.462 15 H 0.098 0.902 16 C -0.219 4.219 17 N -0.556 5.556 18 Si 0.900 3.100 19 H -0.223 1.223 20 H -0.219 1.219 21 H -0.227 1.227 22 C 0.017 3.983 23 C -0.132 4.132 24 H 0.101 0.899 25 C -0.194 4.194 26 C -0.115 4.115 27 C -0.161 4.161 28 C -0.162 4.162 29 C -0.157 4.157 30 C -0.161 4.161 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.247 0.753 35 H 0.236 0.764 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.081 0.919 51 H 0.083 0.917 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.087 4.605 -23.942 25.687 hybrid contribution 1.600 -0.750 -0.411 1.814 sum -6.487 3.855 -24.353 25.495 Atomic orbital electron populations 1.21848 0.91373 1.04490 1.05344 1.20795 0.90704 0.83271 0.74963 1.90717 1.70510 1.31309 1.49672 1.45811 1.06123 1.09760 1.74303 1.20870 0.82417 0.98468 0.96245 0.86656 1.20575 0.82381 0.88001 0.79449 1.90702 1.51918 1.39811 1.58675 1.45917 1.13152 1.19492 1.57485 1.22096 0.94445 0.87166 0.92727 0.88512 1.22162 0.92198 0.98499 0.90272 1.44748 1.17525 1.69478 1.01970 1.19992 1.07915 1.39031 0.79243 0.90172 1.25617 1.04213 0.96505 0.95522 1.70919 1.21203 1.39833 1.23620 0.83877 0.76610 0.76012 0.73505 1.22349 1.21861 1.22749 1.21561 0.94766 0.94990 0.87005 1.22643 0.93935 1.00524 0.96129 0.89945 1.21687 1.01318 1.00101 0.96339 1.22130 1.00126 0.96472 0.92726 1.22605 1.03146 0.96262 0.94118 1.22502 1.00610 0.96118 0.96951 1.22309 0.99646 0.96519 0.97266 1.22221 1.00409 0.96695 0.96789 0.90389 0.88452 0.88754 0.75291 0.76406 0.93932 0.93734 0.92644 0.93291 0.95816 0.92537 0.92917 0.92385 0.89732 0.89593 0.91680 0.91752 0.91855 0.91908 0.91887 0.91657 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.39 36.01 0.37 -0.83 16 2 C 0.51 5.57 6.64 -10.98 -0.07 5.50 16 3 O -0.54 -7.69 14.84 5.56 0.08 -7.61 16 4 N -0.71 -7.45 4.14 -54.93 -0.23 -7.68 16 5 C 0.13 1.46 2.33 -69.08 -0.16 1.30 16 6 H 0.12 1.40 7.33 -51.93 -0.38 1.02 16 7 C 0.51 7.19 6.27 -10.99 -0.07 7.12 16 8 O -0.53 -9.16 15.21 5.55 0.08 -9.07 16 9 N -0.71 -9.81 5.12 -52.02 -0.27 -10.08 16 10 C 0.14 2.37 2.73 -66.09 -0.18 2.19 16 11 H 0.10 1.70 7.49 -51.93 -0.39 1.31 16 12 C 0.09 2.14 4.58 -3.06 -0.01 2.13 16 13 N -0.61 -15.06 3.37 -170.07 -0.57 -15.64 16 14 C -0.34 -9.71 10.45 -15.06 -0.16 -9.87 16 15 H 0.08 2.42 8.06 -52.48 -0.42 1.99 16 16 C -0.02 -0.53 5.46 -17.43 -0.10 -0.63 16 17 N -0.92 -29.04 13.70 55.49 0.76 -28.28 16 18 Si 1.07 28.30 24.64 -169.99 -4.19 24.12 16 19 H -0.30 -7.61 6.39 56.52 0.36 -7.25 16 20 H -0.29 -7.49 6.23 56.52 0.35 -7.14 16 21 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 22 C 0.14 2.78 6.70 -2.53 -0.02 2.77 16 23 C -0.11 -1.69 3.27 -88.47 -0.29 -1.98 16 24 H 0.08 1.18 8.01 -51.93 -0.42 0.76 16 25 C -0.14 -1.58 9.29 37.15 0.35 -1.24 16 26 C -0.09 -0.88 2.82 -89.50 -0.25 -1.13 16 27 C -0.12 -1.16 6.15 -25.03 -0.15 -1.31 16 28 C -0.12 -0.98 6.91 -24.69 -0.17 -1.15 16 29 C -0.12 -0.93 6.83 -25.07 -0.17 -1.10 16 30 C -0.12 -1.11 5.76 -25.61 -0.15 -1.26 16 31 H 0.08 0.41 7.92 -51.93 -0.41 0.00 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.41 4.00 7.23 -40.82 -0.30 3.70 16 35 H 0.40 4.50 8.57 -40.82 -0.35 4.15 16 36 H 0.04 1.07 4.28 -51.93 -0.22 0.85 16 37 H 0.04 1.08 6.58 -51.93 -0.34 0.74 16 38 H 0.26 8.20 8.73 -40.82 -0.36 7.85 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.02 0.46 8.04 -51.93 -0.42 0.04 16 41 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 42 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.09 0.94 4.11 -51.93 -0.21 0.72 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.07 0.73 6.06 -51.93 -0.31 0.42 16 LS Contribution 395.56 15.07 5.96 5.96 Total: -1.00 -35.43 395.56 -8.51 -43.94 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -8.91 Total: 3.83 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -1.23 Total: 0.52 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -0.31 Total: -61.68 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.17 Total: -16.68 kcal Atomic # 14 Polarization: 28.30 SS G_CDS: -4.19 Total: 24.12 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.43 -8.51 -43.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207920929.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.493 kcal (2) G-P(sol) polarization free energy of solvation -35.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds