Wall clock time and date at job start Tue Mar 31 2020 20:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21273 * 120.00231 * 2 1 4 4 N 1.34778 * 119.99573 * 179.97438 * 2 1 3 5 5 C 1.46501 * 119.99505 * 185.32913 * 4 2 1 6 6 H 1.09000 * 109.47512 * 24.35267 * 5 4 2 7 7 C 1.50699 * 109.47252 * 144.35866 * 5 4 2 8 8 O 1.21288 * 119.99671 * 13.69804 * 7 5 4 9 9 N 1.34771 * 120.00377 * 193.69529 * 7 5 4 10 10 C 1.46497 * 120.00158 * 184.93109 * 9 7 5 11 11 H 1.08998 * 110.63925 * 31.86388 * 10 9 7 12 12 C 1.54336 * 111.00501 * 268.78092 * 10 9 7 13 13 N 1.47019 * 107.26605 * 219.60041 * 12 10 9 14 14 C 1.36934 * 125.64546 * 178.84714 * 13 12 10 15 15 H 1.08004 * 119.99832 * 177.61620 * 14 13 12 16 16 C 1.38808 * 120.00268 * 357.61689 * 14 13 12 17 17 N 1.31620 * 120.00404 * 209.00678 * 16 14 13 18 18 Si 1.86808 * 119.99744 * 29.01233 * 16 14 13 19 19 H 1.48500 * 109.46944 * 275.36722 * 18 16 14 20 20 H 1.48499 * 109.46879 * 35.36912 * 18 16 14 21 21 H 1.48493 * 109.47010 * 155.37040 * 18 16 14 22 22 C 1.47425 * 108.70265 * 358.58670 * 13 12 10 23 23 C 1.54906 * 104.83536 * 24.35819 * 22 13 12 24 24 H 1.08993 * 111.01146 * 81.06147 * 23 22 13 25 25 C 1.52993 * 111.00461 * 204.91698 * 23 22 13 26 26 C 1.53001 * 109.46998 * 264.35840 * 5 4 2 27 27 C 1.54266 * 110.03692 * 59.14033 * 26 5 4 28 28 C 1.54970 * 104.16105 * 217.13923 * 27 26 5 29 29 C 1.54889 * 102.77571 * 37.88639 * 28 27 26 30 30 C 1.53878 * 110.03143 * 301.92195 * 26 5 4 31 31 H 1.09001 * 109.47150 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46892 * 300.00389 * 1 2 3 33 33 H 1.09000 * 109.46861 * 60.00331 * 1 2 3 34 34 H 0.97001 * 120.00405 * 5.33019 * 4 2 1 35 35 H 0.97001 * 119.99722 * 4.93706 * 9 7 5 36 36 H 1.08997 * 109.99155 * 100.12445 * 12 10 9 37 37 H 1.08999 * 109.77626 * 338.96278 * 12 10 9 38 38 H 0.97004 * 119.99707 * 354.96870 * 17 16 14 39 39 H 1.09005 * 110.36380 * 143.19535 * 22 13 12 40 40 H 1.08991 * 110.36584 * 265.40161 * 22 13 12 41 41 H 1.09004 * 109.47274 * 58.54463 * 25 23 22 42 42 H 1.09008 * 109.47585 * 178.54188 * 25 23 22 43 43 H 1.09001 * 109.47278 * 298.54104 * 25 23 22 44 44 H 1.09000 * 110.01889 * 180.53317 * 26 5 4 45 45 H 1.09002 * 110.48152 * 335.78362 * 27 26 5 46 46 H 1.08995 * 110.48771 * 98.42381 * 27 26 5 47 47 H 1.08994 * 110.71602 * 279.56695 * 28 27 26 48 48 H 1.09001 * 110.91666 * 156.29363 * 28 27 26 49 49 H 1.09004 * 110.48270 * 203.40439 * 29 28 27 50 50 H 1.08994 * 110.48462 * 80.76379 * 29 28 27 51 51 H 1.08995 * 110.03513 * 238.56876 * 30 26 5 52 52 H 1.09001 * 110.03440 * 0.02562 * 30 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6411 -1.1699 0.1184 6 1 3.9675 -0.2549 0.6126 7 6 4.0775 -2.3623 0.9300 8 8 3.2951 -3.2612 1.1560 9 7 5.3369 -2.4300 1.4048 10 6 5.7937 -3.6356 2.1006 11 1 5.3000 -4.5209 1.6997 12 6 5.5512 -3.5225 3.6206 13 7 6.7195 -4.1087 4.2936 14 6 6.9058 -4.1835 5.6482 15 1 7.7842 -4.6696 6.0464 16 6 5.9656 -3.6348 6.5095 17 7 6.3375 -3.1836 7.6887 18 14 4.1725 -3.5369 5.9950 19 1 3.9548 -2.3078 5.1904 20 1 3.8253 -4.7294 5.1810 21 1 3.3121 -3.4955 7.2045 22 6 7.6542 -4.6081 3.2688 23 6 7.3359 -3.7752 2.0021 24 1 7.8199 -2.7996 2.0440 25 6 7.7383 -4.5305 0.7338 26 6 4.2652 -1.2465 -1.2765 27 6 3.8096 -0.0423 -2.1262 28 6 3.6328 -0.6281 -3.5500 29 6 3.0373 -2.0306 -3.2718 30 6 3.7748 -2.5103 -2.0047 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.6990 -2.0055 -0.0771 35 1 5.9410 -1.6804 1.2859 36 1 4.6507 -4.0713 3.8961 37 1 5.4492 -2.4741 3.9007 38 1 7.2535 -3.3003 7.9858 39 1 8.6849 -4.4425 3.5826 40 1 7.4811 -5.6677 3.0817 41 1 7.2085 -5.4823 0.6942 42 1 7.4802 -3.9343 -0.1415 43 1 8.8129 -4.7130 0.7451 44 1 5.3524 -1.2586 -1.1987 45 1 2.8627 0.3500 -1.7550 46 1 4.5727 0.7360 -2.1250 47 1 4.5951 -0.7102 -4.0553 48 1 2.9406 -0.0238 -4.1363 49 1 3.2370 -2.7023 -4.1068 50 1 1.9657 -1.9599 -3.0857 51 1 4.6240 -3.1352 -2.2810 52 1 3.0919 -3.0688 -1.3645 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207920929.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:36 Heat of formation + Delta-G solvation = -81.333820 kcal Electronic energy + Delta-G solvation = -31412.107742 eV Core-core repulsion = 27410.648725 eV Total energy + Delta-G solvation = -4001.459017 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.97968 -40.59369 -39.40289 -38.54547 -35.85768 -35.30612 -34.50228 -32.81805 -32.11368 -30.04540 -29.56613 -29.41933 -27.66428 -26.65658 -24.71982 -22.76107 -22.08528 -21.82051 -21.53004 -21.25229 -20.25770 -19.59935 -18.65279 -18.08871 -17.68515 -17.10328 -17.06666 -16.80456 -16.20535 -15.96493 -15.76700 -15.37370 -15.17981 -15.02658 -14.87889 -14.37592 -14.30082 -14.15081 -14.05223 -13.96477 -13.61385 -13.31059 -13.19825 -13.02348 -12.94798 -12.53923 -12.46815 -12.22984 -12.09142 -12.01547 -11.93434 -11.87427 -11.84561 -11.62575 -11.53142 -11.38997 -11.26031 -10.99681 -10.96637 -10.69745 -10.17937 -10.07526 -9.18523 -8.73274 -5.42875 1.30335 1.36790 1.39320 1.56014 1.57066 1.82490 2.39583 2.39986 2.95047 3.26870 3.49433 3.50638 3.60974 3.71532 3.76396 3.89591 3.91313 3.98390 4.20929 4.23908 4.34115 4.42762 4.48469 4.56730 4.57507 4.62468 4.65941 4.67897 4.68893 4.78494 4.81472 4.83971 4.86051 4.99758 5.00044 5.03692 5.06823 5.09987 5.20899 5.25600 5.31350 5.35858 5.36623 5.44065 5.46827 5.53013 5.54852 6.05220 6.39152 6.49447 6.77274 7.05528 7.18501 7.43956 8.07460 8.79955 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013183 B = 0.003749 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.451153 B = 7466.032585 C = 8948.350580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.510 3.490 3 O -0.581 6.581 4 N -0.704 5.704 5 C 0.135 3.865 6 H 0.107 0.893 7 C 0.513 3.487 8 O -0.565 6.565 9 N -0.702 5.702 10 C 0.156 3.844 11 H 0.096 0.904 12 C 0.091 3.909 13 N -0.630 5.630 14 C -0.320 4.320 15 H 0.058 0.942 16 C -0.070 4.070 17 N -0.950 5.950 18 Si 1.106 2.894 19 H -0.287 1.287 20 H -0.283 1.283 21 H -0.302 1.302 22 C 0.133 3.867 23 C -0.092 4.092 24 H 0.094 0.906 25 C -0.129 4.129 26 C -0.089 4.089 27 C -0.124 4.124 28 C -0.119 4.119 29 C -0.117 4.117 30 C -0.121 4.121 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.415 0.585 35 H 0.416 0.584 36 H 0.020 0.980 37 H 0.026 0.974 38 H 0.253 0.747 39 H 0.048 0.952 40 H 0.032 0.968 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.072 0.928 50 H 0.063 0.937 51 H 0.070 0.930 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.796 4.013 -28.308 29.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.300 3.700 3 O -0.462 6.462 4 N -0.358 5.358 5 C 0.026 3.974 6 H 0.125 0.875 7 C 0.299 3.701 8 O -0.443 6.443 9 N -0.353 5.353 10 C 0.050 3.950 11 H 0.114 0.886 12 C -0.035 4.035 13 N -0.357 5.357 14 C -0.449 4.449 15 H 0.076 0.924 16 C -0.266 4.266 17 N -0.594 5.594 18 Si 0.936 3.064 19 H -0.215 1.215 20 H -0.210 1.210 21 H -0.231 1.231 22 C 0.008 3.992 23 C -0.112 4.112 24 H 0.113 0.887 25 C -0.186 4.186 26 C -0.109 4.109 27 C -0.161 4.161 28 C -0.157 4.157 29 C -0.154 4.154 30 C -0.159 4.159 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.128 0.872 34 H 0.253 0.747 35 H 0.253 0.747 36 H 0.038 0.962 37 H 0.043 0.957 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.117 0.883 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.091 0.909 48 H 0.086 0.914 49 H 0.091 0.909 50 H 0.082 0.918 51 H 0.089 0.911 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.373 4.611 -27.584 29.193 hybrid contribution 1.771 -0.806 0.706 2.070 sum -6.602 3.805 -26.878 27.937 Atomic orbital electron populations 1.21893 0.88384 1.06094 1.06174 1.21464 0.92135 0.82566 0.73851 1.90698 1.71544 1.32490 1.51421 1.45866 1.05876 1.10074 1.73944 1.20824 0.83192 0.96416 0.96967 0.87479 1.21044 0.81875 0.88230 0.78949 1.90691 1.52717 1.41143 1.59748 1.45783 1.13604 1.19175 1.56763 1.21783 0.95967 0.88356 0.88894 0.88635 1.22200 0.90572 0.96534 0.94221 1.44860 1.19569 1.69845 1.01476 1.19973 1.06416 1.36717 0.81777 0.92364 1.26564 1.07105 0.97328 0.95560 1.70998 1.20662 1.42728 1.24978 0.83300 0.73273 0.76632 0.73155 1.21469 1.20993 1.23062 1.21862 0.93594 0.96092 0.87673 1.22559 0.92202 1.00825 0.95630 0.88742 1.21653 1.02287 0.99847 0.94837 1.22137 1.00752 0.96768 0.91220 1.22561 1.02280 0.96198 0.95080 1.22480 1.01212 0.95996 0.95989 1.22297 0.99551 0.96583 0.96994 1.22196 1.00415 0.96291 0.96995 0.88441 0.88229 0.87174 0.74744 0.74665 0.96244 0.95651 0.93734 0.93378 0.95015 0.92634 0.90476 0.90830 0.88344 0.91147 0.91828 0.90892 0.91438 0.90893 0.91836 0.91127 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 10.39 71.24 0.74 -1.29 16 2 C 0.51 10.48 6.64 87.66 0.58 11.06 16 3 O -0.58 -16.11 14.84 -3.01 -0.04 -16.16 16 4 N -0.70 -13.98 4.14 -446.09 -1.85 -15.82 16 5 C 0.14 2.86 2.33 44.25 0.10 2.97 16 6 H 0.11 2.49 7.33 -2.39 -0.02 2.48 16 7 C 0.51 13.57 6.27 87.66 0.55 14.12 16 8 O -0.56 -18.62 15.21 -3.05 -0.05 -18.67 16 9 N -0.70 -17.86 5.12 -436.89 -2.23 -20.10 16 10 C 0.16 4.96 2.73 46.19 0.13 5.09 16 11 H 0.10 3.14 7.49 -2.39 -0.02 3.12 16 12 C 0.09 4.06 4.58 86.73 0.40 4.46 16 13 N -0.63 -31.06 3.37 -691.99 -2.33 -33.39 16 14 C -0.32 -18.94 10.45 84.03 0.88 -18.06 16 15 H 0.06 3.63 8.06 -2.91 -0.02 3.60 16 16 C -0.07 -4.33 5.46 84.86 0.46 -3.87 16 17 N -0.95 -62.12 13.70 21.65 0.30 -61.82 16 18 Si 1.11 58.72 24.64 68.60 1.69 60.41 16 19 H -0.29 -14.67 6.39 99.48 0.64 -14.04 16 20 H -0.28 -14.43 6.23 99.48 0.62 -13.81 16 21 H -0.30 -16.01 7.11 99.48 0.71 -15.31 16 22 C 0.13 4.96 6.70 86.85 0.58 5.55 16 23 C -0.09 -2.50 3.27 -9.40 -0.03 -2.53 16 24 H 0.09 2.37 8.01 -2.39 -0.02 2.35 16 25 C -0.13 -2.42 9.29 71.98 0.67 -1.75 16 26 C -0.09 -1.44 2.82 -10.07 -0.03 -1.47 16 27 C -0.12 -2.07 6.15 31.70 0.20 -1.87 16 28 C -0.12 -1.56 6.91 31.91 0.22 -1.34 16 29 C -0.12 -1.50 6.83 31.67 0.22 -1.29 16 30 C -0.12 -1.87 5.76 31.32 0.18 -1.69 16 31 H 0.10 0.80 7.92 -2.39 -0.02 0.78 16 32 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 33 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.41 7.52 7.23 -92.71 -0.67 6.85 16 35 H 0.42 8.20 8.57 -92.71 -0.79 7.40 16 36 H 0.02 0.99 4.28 -2.39 -0.01 0.98 16 37 H 0.03 1.23 6.58 -2.39 -0.02 1.22 16 38 H 0.25 16.42 8.73 -92.71 -0.81 15.61 16 39 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.03 1.16 8.04 -2.39 -0.02 1.14 16 41 H 0.05 1.09 8.11 -2.38 -0.02 1.07 16 42 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.07 1.44 4.11 -2.39 -0.01 1.43 16 46 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 50 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 52 H 0.06 1.07 6.06 -2.39 -0.01 1.05 16 Total: -1.00 -79.26 395.56 0.59 -78.67 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -0.73 Total: 18.82 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 5.84 Total: 8.07 kcal Atomic # 7 Polarization: -125.01 SS G_CDS: -6.12 Total: -131.13 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -0.09 Total: -34.83 kcal Atomic # 14 Polarization: 58.72 SS G_CDS: 1.69 Total: 60.41 kcal Total: -79.26 0.59 -78.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207920929.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.668 kcal (2) G-P(sol) polarization free energy of solvation -79.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds