Wall clock time and date at job start Tue Mar 31 2020 20:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50704 * 120.00387 * 2 1 4 4 C 1.50703 * 119.99747 * 179.97438 * 2 1 3 5 5 C 1.53003 * 109.46976 * 2.86672 * 4 2 1 6 6 C 1.52994 * 109.46950 * 242.86489 * 4 2 1 7 7 C 1.50697 * 109.47178 * 122.86616 * 4 2 1 8 8 O 1.21284 * 120.00088 * 353.54299 * 7 4 2 9 9 N 1.34770 * 120.00159 * 173.54711 * 7 4 2 10 10 C 1.46507 * 120.00233 * 179.97438 * 9 7 4 11 11 H 1.08999 * 110.64302 * 34.29635 * 10 9 7 12 12 C 1.54938 * 110.72258 * 271.14827 * 10 9 7 13 13 N 1.48529 * 103.22392 * 204.04871 * 12 10 9 14 14 C 1.46898 * 111.00066 * 159.72192 * 13 12 10 15 15 C 1.50702 * 109.47261 * 69.87245 * 14 13 12 16 16 O 1.21292 * 119.99867 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00137 * 180.02562 * 15 14 13 18 18 C 1.37100 * 120.00137 * 179.97438 * 17 15 14 19 19 H 1.07995 * 120.00214 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99947 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00132 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 120.00254 * 0.02562 * 20 18 17 23 23 H 1.48507 * 109.46978 * 89.99458 * 22 20 18 24 24 H 1.48497 * 109.47066 * 209.99771 * 22 20 18 25 25 H 1.48498 * 109.47008 * 329.99711 * 22 20 18 26 26 C 1.47898 * 105.82377 * 39.20397 * 13 12 10 27 27 C 1.53989 * 107.05753 * 334.67111 * 26 13 12 28 28 H 1.09006 * 110.30766 * 120.14000 * 27 26 13 29 29 C 1.52998 * 110.30941 * 242.30431 * 27 26 13 30 30 H 1.07996 * 119.99562 * 5.53143 * 1 2 3 31 31 H 1.07993 * 120.00154 * 185.52171 * 1 2 3 32 32 H 1.08998 * 109.47020 * 270.00167 * 3 2 1 33 33 H 1.09001 * 109.46506 * 29.99752 * 3 2 1 34 34 H 1.08994 * 109.47204 * 149.99784 * 3 2 1 35 35 H 1.09000 * 109.46655 * 180.02562 * 5 4 2 36 36 H 1.08996 * 109.46683 * 299.99530 * 5 4 2 37 37 H 1.08992 * 109.47149 * 60.00084 * 5 4 2 38 38 H 1.09002 * 109.47398 * 299.99708 * 6 4 2 39 39 H 1.08999 * 109.47655 * 60.00413 * 6 4 2 40 40 H 1.09006 * 109.47177 * 179.97438 * 6 4 2 41 41 H 0.96996 * 120.00344 * 359.97438 * 9 7 4 42 42 H 1.08997 * 110.66487 * 322.47966 * 12 10 9 43 43 H 1.08999 * 110.66971 * 85.44569 * 12 10 9 44 44 H 1.08998 * 109.47436 * 189.87520 * 14 13 12 45 45 H 1.09006 * 109.47129 * 309.87344 * 14 13 12 46 46 H 0.97011 * 120.00189 * 359.97438 * 17 15 14 47 47 H 0.97001 * 120.00413 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.91325 * 94.02455 * 26 13 12 49 49 H 1.09001 * 109.92278 * 215.11764 * 26 13 12 50 50 H 1.09006 * 109.47166 * 175.71589 * 29 27 26 51 51 H 1.08999 * 109.47333 * 295.71965 * 29 27 26 52 52 H 1.08998 * 109.47149 * 55.71709 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0637 1.3051 0.0000 4 6 2.0635 -1.3052 0.0006 5 6 1.0707 -2.4672 -0.0710 6 6 2.8882 -1.4173 1.2843 7 6 2.9824 -1.3553 -1.1928 8 8 2.9378 -0.4786 -2.0297 9 7 3.8537 -2.3742 -1.3301 10 6 4.7467 -2.4232 -2.4905 11 1 5.0436 -1.4180 -2.7897 12 6 4.0731 -3.1696 -3.6694 13 7 5.2274 -3.6490 -4.4719 14 6 4.8343 -4.7613 -5.3472 15 6 3.9329 -4.2465 -6.4397 16 8 3.6457 -3.0689 -6.4844 17 7 3.4450 -5.0947 -7.3664 18 6 2.6245 -4.6265 -8.3600 19 1 2.3687 -3.5780 -8.3999 20 6 2.1219 -5.5010 -9.3157 21 7 1.3350 -5.0523 -10.2678 22 14 2.5635 -7.3148 -9.2465 23 1 1.5632 -8.0366 -8.4196 24 1 2.5673 -7.8761 -10.6212 25 1 3.9113 -7.4733 -8.6434 26 6 6.2481 -4.0804 -3.4925 27 6 5.9884 -3.2949 -2.1938 28 1 5.7818 -3.9804 -1.3718 29 6 7.1908 -2.4099 -1.8590 30 1 -0.5399 0.9310 -0.0902 31 1 -0.5400 -0.9309 0.0900 32 1 2.2453 1.6197 -1.0276 33 1 1.4745 2.0647 0.5138 34 1 3.0160 1.1747 0.5138 35 1 1.6157 -3.4111 -0.0702 36 1 0.4062 -2.4309 0.7921 37 1 0.4832 -2.3872 -0.9856 38 1 3.5955 -0.5895 1.3353 39 1 2.2237 -1.3811 2.1475 40 1 3.4329 -2.3615 1.2850 41 1 3.8897 -3.0752 -0.6606 42 1 3.4823 -4.0101 -3.3053 43 1 3.4527 -2.4885 -4.2519 44 1 5.7247 -5.2069 -5.7907 45 1 4.3041 -5.5135 -4.7631 46 1 3.6743 -6.0367 -7.3305 47 1 0.9838 -5.6628 -10.9348 48 1 6.1538 -5.1500 -3.3047 49 1 7.2451 -3.8568 -3.8722 50 1 6.9632 -1.8044 -0.9817 51 1 8.0576 -3.0375 -1.6524 52 1 7.4081 -1.7572 -2.7045 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208291911.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:18 Heat of formation + Delta-G solvation = -46.536881 kcal Electronic energy + Delta-G solvation = -30383.805690 eV Core-core repulsion = 26383.855581 eV Total energy + Delta-G solvation = -3999.950109 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.66952 -39.32569 -37.93072 -36.71059 -34.65466 -33.89388 -32.88963 -31.86728 -31.61662 -28.99442 -28.66838 -27.37933 -26.27671 -25.39964 -24.32356 -23.48319 -21.52274 -20.66793 -20.38184 -19.31837 -18.28352 -18.22784 -16.70062 -16.65838 -16.05505 -15.72131 -15.25674 -14.94721 -14.85137 -14.60101 -14.45350 -14.08564 -13.84548 -13.69847 -13.37480 -13.25333 -13.23208 -12.92223 -12.72978 -12.60296 -12.48156 -12.42845 -12.32262 -12.16383 -12.03130 -11.89129 -11.68635 -11.37986 -11.34266 -11.24645 -11.10762 -11.01966 -10.91736 -10.65436 -10.57265 -9.93814 -9.78786 -9.51797 -9.15012 -9.03274 -8.56391 -8.14757 -8.03902 -6.26976 -3.78162 2.03372 2.60407 3.04209 3.07419 3.08131 3.16378 3.78769 4.03587 4.13285 4.22740 4.36327 4.48696 4.58864 4.67541 4.68343 4.78772 4.89304 5.03104 5.18562 5.21600 5.26356 5.31098 5.33557 5.35189 5.38519 5.42696 5.44336 5.46689 5.57934 5.61052 5.71386 5.73124 5.74943 5.78222 5.81843 5.87367 5.90895 5.94865 5.99016 6.04242 6.11449 6.36357 6.47019 6.50324 6.70946 7.07749 7.11967 7.40746 7.62434 8.19139 8.19614 8.64788 9.00056 9.46780 9.88712 10.86385 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012457 B = 0.002824 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.168251 B = 9912.191496 C =11246.880179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.093 4.093 3 C -0.116 4.116 4 C -0.048 4.048 5 C -0.143 4.143 6 C -0.138 4.138 7 C 0.524 3.476 8 O -0.519 6.519 9 N -0.722 5.722 10 C 0.145 3.855 11 H 0.105 0.895 12 C 0.033 3.967 13 N -0.489 5.489 14 C 0.035 3.965 15 C 0.453 3.547 16 O -0.554 6.554 17 N -0.594 5.594 18 C -0.302 4.302 19 H 0.120 0.880 20 C 0.040 3.960 21 N -0.883 5.883 22 Si 0.879 3.121 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.038 3.962 27 C -0.106 4.106 28 H 0.077 0.923 29 C -0.140 4.140 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.396 0.604 42 H 0.039 0.961 43 H 0.106 0.894 44 H 0.091 0.909 45 H 0.049 0.951 46 H 0.369 0.631 47 H 0.273 0.727 48 H 0.044 0.956 49 H 0.084 0.916 50 H 0.054 0.946 51 H 0.057 0.943 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.809 0.917 27.123 27.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.094 4.094 3 C -0.173 4.173 4 C -0.051 4.051 5 C -0.201 4.201 6 C -0.195 4.195 7 C 0.310 3.690 8 O -0.393 6.393 9 N -0.374 5.374 10 C 0.040 3.960 11 H 0.123 0.877 12 C -0.096 4.096 13 N -0.213 5.213 14 C -0.097 4.097 15 C 0.238 3.762 16 O -0.435 6.435 17 N -0.234 5.234 18 C -0.431 4.431 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.523 5.523 22 Si 0.706 3.294 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.090 4.090 27 C -0.126 4.126 28 H 0.095 0.905 29 C -0.198 4.198 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.230 0.770 42 H 0.057 0.943 43 H 0.124 0.876 44 H 0.109 0.891 45 H 0.067 0.933 46 H 0.202 0.798 47 H 0.083 0.917 48 H 0.062 0.938 49 H 0.102 0.898 50 H 0.073 0.927 51 H 0.076 0.924 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.658 2.746 25.919 26.901 hybrid contribution -0.082 -2.762 0.574 2.822 sum 6.576 -0.016 26.493 27.297 Atomic orbital electron populations 1.23789 0.95129 1.02372 1.02404 1.21209 0.94906 0.93968 0.99299 1.20845 0.99355 0.93942 1.03155 1.19832 0.95400 0.95522 0.94333 1.21944 0.98786 0.96004 1.03323 1.21859 0.99759 1.02266 0.95622 1.20357 0.80283 0.81456 0.86930 1.90749 1.67986 1.37720 1.42867 1.45978 1.39068 1.26571 1.25787 1.22006 0.88201 1.01047 0.84772 0.87658 1.23647 0.93329 0.99039 0.93549 1.64419 1.09009 1.31223 1.16642 1.22107 0.99681 0.92402 0.95476 1.19615 0.84904 0.87167 0.84485 1.90575 1.61243 1.16222 1.75468 1.42203 1.45575 1.08837 1.26749 1.19433 1.22512 0.98137 1.03032 0.86285 1.25027 0.96890 0.98392 0.95900 1.69621 1.32405 1.35526 1.14763 0.86680 0.78749 0.85403 0.78592 1.19746 1.20203 1.19511 1.22997 0.97875 0.97251 0.90872 1.22221 0.95463 0.97207 0.97692 0.90509 1.21815 0.96615 0.99432 1.01906 0.88195 0.87887 0.90192 0.92235 0.92393 0.91940 0.91007 0.91331 0.91753 0.91262 0.92032 0.76991 0.94279 0.87626 0.89085 0.93255 0.79827 0.91675 0.93776 0.89811 0.92680 0.92424 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.96 13.27 29.01 0.38 -1.57 16 2 C -0.09 -0.98 4.41 -101.06 -0.45 -1.43 16 3 C -0.12 -1.20 9.10 36.01 0.33 -0.87 16 4 C -0.05 -0.45 0.75 -156.81 -0.12 -0.56 16 5 C -0.14 -1.18 7.11 37.16 0.26 -0.91 16 6 C -0.14 -0.91 8.17 37.15 0.30 -0.60 16 7 C 0.52 6.59 6.32 -10.99 -0.07 6.52 16 8 O -0.52 -8.93 14.44 5.55 0.08 -8.85 16 9 N -0.72 -7.54 5.03 -52.01 -0.26 -7.80 16 10 C 0.14 1.84 2.92 -66.07 -0.19 1.65 16 11 H 0.11 1.60 7.34 -51.93 -0.38 1.22 16 12 C 0.03 0.54 5.54 -1.90 -0.01 0.53 16 13 N -0.49 -7.95 4.95 -231.90 -1.15 -9.09 16 14 C 0.04 0.60 5.18 -4.98 -0.03 0.58 16 15 C 0.45 10.60 7.59 -10.99 -0.08 10.52 16 16 O -0.55 -15.40 14.42 5.55 0.08 -15.32 16 17 N -0.59 -14.47 5.09 -10.96 -0.06 -14.52 16 18 C -0.30 -8.74 10.16 -14.93 -0.15 -8.90 16 19 H 0.12 3.95 7.39 -52.49 -0.39 3.56 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -26.27 13.96 55.50 0.77 -25.50 16 22 Si 0.88 19.63 27.74 -169.99 -4.71 14.92 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.27 -5.47 6.52 56.52 0.37 -5.11 16 26 C 0.04 0.44 6.34 -2.76 -0.02 0.43 16 27 C -0.11 -1.02 3.33 -89.27 -0.30 -1.32 16 28 H 0.08 0.58 7.74 -51.93 -0.40 0.18 16 29 C -0.14 -1.19 8.89 37.16 0.33 -0.86 16 30 H 0.10 0.91 8.05 -52.49 -0.42 0.48 16 31 H 0.10 0.89 5.72 -52.49 -0.30 0.59 16 32 H 0.08 1.01 7.39 -51.93 -0.38 0.63 16 33 H 0.06 0.51 8.06 -51.93 -0.42 0.09 16 34 H 0.06 0.54 6.79 -51.93 -0.35 0.19 16 35 H 0.06 0.43 8.04 -51.93 -0.42 0.01 16 36 H 0.07 0.47 7.28 -51.93 -0.38 0.09 16 37 H 0.07 0.69 7.71 -51.93 -0.40 0.29 16 38 H 0.06 0.45 6.91 -51.93 -0.36 0.09 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.30 7.23 -51.93 -0.38 -0.07 16 41 H 0.40 2.90 7.31 -40.82 -0.30 2.61 16 42 H 0.04 0.60 7.85 -51.93 -0.41 0.20 16 43 H 0.11 2.25 6.92 -51.93 -0.36 1.89 16 44 H 0.09 1.36 8.11 -51.93 -0.42 0.94 16 45 H 0.05 0.74 7.90 -51.93 -0.41 0.33 16 46 H 0.37 7.86 5.76 -40.82 -0.24 7.63 16 47 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.04 0.45 7.77 -51.93 -0.40 0.04 16 49 H 0.08 0.92 7.69 -51.93 -0.40 0.52 16 50 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 51 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 52 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 406.80 15.07 6.13 6.13 Total: -1.00 -35.63 406.80 -7.79 -43.41 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -8.77 Total: 12.40 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 0.10 Total: 4.22 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.69 Total: -56.92 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: 0.16 Total: -24.17 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.71 Total: 14.92 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.63 -7.79 -43.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208291911.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.122 kcal (2) G-P(sol) polarization free energy of solvation -35.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds