Wall clock time and date at job start Tue Mar 31 2020 20:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50704 * 120.00387 * 2 1 4 4 C 1.50703 * 119.99747 * 179.97438 * 2 1 3 5 5 C 1.53003 * 109.46976 * 2.86672 * 4 2 1 6 6 C 1.52994 * 109.46950 * 242.86489 * 4 2 1 7 7 C 1.50697 * 109.47178 * 122.86616 * 4 2 1 8 8 O 1.21284 * 120.00088 * 353.54299 * 7 4 2 9 9 N 1.34770 * 120.00159 * 173.54711 * 7 4 2 10 10 C 1.46507 * 120.00233 * 179.97438 * 9 7 4 11 11 H 1.08999 * 110.64302 * 34.29635 * 10 9 7 12 12 C 1.54938 * 110.72258 * 271.14827 * 10 9 7 13 13 N 1.48529 * 103.22392 * 204.04871 * 12 10 9 14 14 C 1.46898 * 111.00066 * 159.72192 * 13 12 10 15 15 C 1.50702 * 109.47261 * 69.87245 * 14 13 12 16 16 O 1.21292 * 119.99867 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00137 * 180.02562 * 15 14 13 18 18 C 1.37100 * 120.00137 * 179.97438 * 17 15 14 19 19 H 1.07995 * 120.00214 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99947 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00132 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 120.00254 * 0.02562 * 20 18 17 23 23 H 1.48507 * 109.46978 * 89.99458 * 22 20 18 24 24 H 1.48497 * 109.47066 * 209.99771 * 22 20 18 25 25 H 1.48498 * 109.47008 * 329.99711 * 22 20 18 26 26 C 1.47898 * 105.82377 * 39.20397 * 13 12 10 27 27 C 1.53989 * 107.05753 * 334.67111 * 26 13 12 28 28 H 1.09006 * 110.30766 * 120.14000 * 27 26 13 29 29 C 1.52998 * 110.30941 * 242.30431 * 27 26 13 30 30 H 1.07996 * 119.99562 * 5.53143 * 1 2 3 31 31 H 1.07993 * 120.00154 * 185.52171 * 1 2 3 32 32 H 1.08998 * 109.47020 * 270.00167 * 3 2 1 33 33 H 1.09001 * 109.46506 * 29.99752 * 3 2 1 34 34 H 1.08994 * 109.47204 * 149.99784 * 3 2 1 35 35 H 1.09000 * 109.46655 * 180.02562 * 5 4 2 36 36 H 1.08996 * 109.46683 * 299.99530 * 5 4 2 37 37 H 1.08992 * 109.47149 * 60.00084 * 5 4 2 38 38 H 1.09002 * 109.47398 * 299.99708 * 6 4 2 39 39 H 1.08999 * 109.47655 * 60.00413 * 6 4 2 40 40 H 1.09006 * 109.47177 * 179.97438 * 6 4 2 41 41 H 0.96996 * 120.00344 * 359.97438 * 9 7 4 42 42 H 1.08997 * 110.66487 * 322.47966 * 12 10 9 43 43 H 1.08999 * 110.66971 * 85.44569 * 12 10 9 44 44 H 1.08998 * 109.47436 * 189.87520 * 14 13 12 45 45 H 1.09006 * 109.47129 * 309.87344 * 14 13 12 46 46 H 0.97011 * 120.00189 * 359.97438 * 17 15 14 47 47 H 0.97001 * 120.00413 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.91325 * 94.02455 * 26 13 12 49 49 H 1.09001 * 109.92278 * 215.11764 * 26 13 12 50 50 H 1.09006 * 109.47166 * 175.71589 * 29 27 26 51 51 H 1.08999 * 109.47333 * 295.71965 * 29 27 26 52 52 H 1.08998 * 109.47149 * 55.71709 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0637 1.3051 0.0000 4 6 2.0635 -1.3052 0.0006 5 6 1.0707 -2.4672 -0.0710 6 6 2.8882 -1.4173 1.2843 7 6 2.9824 -1.3553 -1.1928 8 8 2.9378 -0.4786 -2.0297 9 7 3.8537 -2.3742 -1.3301 10 6 4.7467 -2.4232 -2.4905 11 1 5.0436 -1.4180 -2.7897 12 6 4.0731 -3.1696 -3.6694 13 7 5.2274 -3.6490 -4.4719 14 6 4.8343 -4.7613 -5.3472 15 6 3.9329 -4.2465 -6.4397 16 8 3.6457 -3.0689 -6.4844 17 7 3.4450 -5.0947 -7.3664 18 6 2.6245 -4.6265 -8.3600 19 1 2.3687 -3.5780 -8.3999 20 6 2.1219 -5.5010 -9.3157 21 7 1.3350 -5.0523 -10.2678 22 14 2.5635 -7.3148 -9.2465 23 1 1.5632 -8.0366 -8.4196 24 1 2.5673 -7.8761 -10.6212 25 1 3.9113 -7.4733 -8.6434 26 6 6.2481 -4.0804 -3.4925 27 6 5.9884 -3.2949 -2.1938 28 1 5.7818 -3.9804 -1.3718 29 6 7.1908 -2.4099 -1.8590 30 1 -0.5399 0.9310 -0.0902 31 1 -0.5400 -0.9309 0.0900 32 1 2.2453 1.6197 -1.0276 33 1 1.4745 2.0647 0.5138 34 1 3.0160 1.1747 0.5138 35 1 1.6157 -3.4111 -0.0702 36 1 0.4062 -2.4309 0.7921 37 1 0.4832 -2.3872 -0.9856 38 1 3.5955 -0.5895 1.3353 39 1 2.2237 -1.3811 2.1475 40 1 3.4329 -2.3615 1.2850 41 1 3.8897 -3.0752 -0.6606 42 1 3.4823 -4.0101 -3.3053 43 1 3.4527 -2.4885 -4.2519 44 1 5.7247 -5.2069 -5.7907 45 1 4.3041 -5.5135 -4.7631 46 1 3.6743 -6.0367 -7.3305 47 1 0.9838 -5.6628 -10.9348 48 1 6.1538 -5.1500 -3.3047 49 1 7.2451 -3.8568 -3.8722 50 1 6.9632 -1.8044 -0.9817 51 1 8.0576 -3.0375 -1.6524 52 1 7.4081 -1.7572 -2.7045 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208291911.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:17 Heat of formation + Delta-G solvation = -75.158681 kcal Electronic energy + Delta-G solvation = -30385.046824 eV Core-core repulsion = 26383.855581 eV Total energy + Delta-G solvation = -4001.191243 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.65107 -40.65665 -39.49774 -37.64352 -36.12210 -35.60466 -33.93722 -33.70808 -32.64955 -30.17063 -29.40418 -28.62919 -26.99040 -26.76358 -25.60873 -24.54639 -22.69883 -21.65409 -21.30369 -21.25484 -20.23659 -19.10661 -17.90595 -17.64499 -17.44834 -16.84718 -16.52263 -16.33146 -16.23894 -15.77016 -15.55955 -15.25739 -14.94120 -14.79220 -14.64816 -14.63007 -14.36060 -14.06489 -13.97530 -13.84680 -13.45375 -13.32941 -13.17681 -13.07738 -13.04559 -12.99917 -12.84064 -12.56941 -12.45610 -12.41752 -12.19453 -12.00294 -11.97240 -11.88661 -11.68557 -11.61389 -11.49883 -10.77979 -10.41679 -10.26659 -10.12251 -9.91011 -9.31789 -8.42626 -6.04156 1.21919 1.28251 1.34488 1.43799 1.62166 1.95117 2.15501 2.22124 2.69253 3.12937 3.28057 3.48460 3.50884 3.62050 3.75648 3.93787 3.96212 4.06707 4.14538 4.17342 4.29657 4.31614 4.38895 4.46099 4.57253 4.62227 4.67415 4.68175 4.71911 4.79219 4.84589 4.85794 4.87054 4.95219 5.03887 5.05020 5.08622 5.12743 5.14768 5.22297 5.29074 5.37439 5.48544 5.51318 5.68001 5.84660 5.91488 5.92845 6.06656 6.54630 6.58756 6.87337 7.28003 7.38210 7.97606 8.75631 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012457 B = 0.002824 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.168251 B = 9912.191496 C =11246.880179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.114 4.114 4 C -0.043 4.043 5 C -0.142 4.142 6 C -0.133 4.133 7 C 0.517 3.483 8 O -0.578 6.578 9 N -0.704 5.704 10 C 0.153 3.847 11 H 0.069 0.931 12 C 0.038 3.962 13 N -0.521 5.521 14 C 0.048 3.952 15 C 0.447 3.553 16 O -0.611 6.611 17 N -0.591 5.591 18 C -0.330 4.330 19 H 0.049 0.951 20 C -0.017 4.017 21 N -0.937 5.937 22 Si 0.969 3.031 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.228 1.228 26 C 0.039 3.961 27 C -0.091 4.091 28 H 0.115 0.885 29 C -0.137 4.137 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.041 0.959 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.416 0.584 42 H 0.050 0.950 43 H 0.037 0.963 44 H 0.126 0.874 45 H 0.085 0.915 46 H 0.390 0.610 47 H 0.279 0.721 48 H 0.075 0.925 49 H 0.092 0.908 50 H 0.060 0.940 51 H 0.082 0.918 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.147 -3.815 30.900 32.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.115 4.115 3 C -0.170 4.170 4 C -0.046 4.046 5 C -0.199 4.199 6 C -0.191 4.191 7 C 0.305 3.695 8 O -0.456 6.456 9 N -0.356 5.356 10 C 0.046 3.954 11 H 0.087 0.913 12 C -0.091 4.091 13 N -0.246 5.246 14 C -0.083 4.083 15 C 0.235 3.765 16 O -0.494 6.494 17 N -0.234 5.234 18 C -0.459 4.459 19 H 0.067 0.933 20 C -0.216 4.216 21 N -0.578 5.578 22 Si 0.788 3.212 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.152 1.152 26 C -0.089 4.089 27 C -0.110 4.110 28 H 0.133 0.867 29 C -0.195 4.195 30 H 0.120 0.880 31 H 0.133 0.867 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.255 0.745 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.143 0.857 45 H 0.102 0.898 46 H 0.226 0.774 47 H 0.089 0.911 48 H 0.094 0.906 49 H 0.110 0.890 50 H 0.079 0.921 51 H 0.101 0.899 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 9.031 -2.023 29.756 31.162 hybrid contribution -0.875 -1.095 -0.655 1.547 sum 8.156 -3.118 29.101 30.383 Atomic orbital electron populations 1.23982 0.95093 1.03128 1.01541 1.21443 0.95441 0.94605 1.00020 1.20803 1.00216 0.94687 1.01321 1.19868 0.95224 0.95420 0.94088 1.21976 0.98763 0.96230 1.02974 1.21880 0.99677 1.03338 0.94157 1.21114 0.80367 0.80853 0.87209 1.90737 1.69671 1.40016 1.45161 1.45794 1.37949 1.26581 1.25326 1.21725 0.89720 0.99456 0.84461 0.91317 1.23389 0.93370 0.98397 0.93991 1.64262 1.09729 1.32079 1.18489 1.22047 0.99623 0.92936 0.93712 1.21032 0.84192 0.86361 0.84946 1.90570 1.62973 1.19101 1.76797 1.42006 1.45299 1.10006 1.26082 1.18973 1.25266 0.95737 1.05912 0.93327 1.26182 0.95755 1.05337 0.94281 1.69818 1.33667 1.38438 1.15863 0.85315 0.80733 0.75864 0.79259 1.18013 1.19923 1.15162 1.23142 0.96340 0.99223 0.90150 1.22222 0.93702 0.96954 0.98171 0.86700 1.21798 0.96997 0.99409 1.01257 0.87990 0.86670 0.93490 0.90749 0.91630 0.89982 0.88760 0.93979 0.92307 0.89636 0.89639 0.74537 0.93178 0.94429 0.85651 0.89774 0.77405 0.91113 0.90643 0.89011 0.92087 0.89873 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.93 13.27 67.77 0.90 -3.03 16 2 C -0.11 -2.44 4.41 -16.49 -0.07 -2.52 16 3 C -0.11 -2.48 9.10 71.24 0.65 -1.83 16 4 C -0.04 -0.77 0.75 -53.67 -0.04 -0.81 16 5 C -0.14 -2.09 7.11 71.98 0.51 -1.57 16 6 C -0.13 -1.38 8.17 71.98 0.59 -0.79 16 7 C 0.52 13.34 6.32 87.66 0.55 13.90 16 8 O -0.58 -21.76 14.44 -3.04 -0.04 -21.80 16 9 N -0.70 -13.93 5.03 -436.84 -2.20 -16.12 16 10 C 0.15 3.86 2.92 46.19 0.14 3.99 16 11 H 0.07 2.26 7.34 -2.39 -0.02 2.25 16 12 C 0.04 1.27 5.54 86.65 0.48 1.75 16 13 N -0.52 -16.38 4.95 -887.59 -4.40 -20.78 16 14 C 0.05 1.53 5.18 85.56 0.44 1.97 16 15 C 0.45 21.39 7.59 87.66 0.66 22.05 16 16 O -0.61 -36.61 14.42 -3.07 -0.04 -36.66 16 17 N -0.59 -29.02 5.09 -306.99 -1.56 -30.58 16 18 C -0.33 -20.13 10.16 84.04 0.85 -19.27 16 19 H 0.05 3.57 7.39 -2.91 -0.02 3.55 16 20 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 21 N -0.94 -58.20 13.96 21.66 0.30 -57.90 16 22 Si 0.97 39.41 27.74 68.60 1.90 41.31 16 23 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 26 C 0.04 0.73 6.34 86.45 0.55 1.28 16 27 C -0.09 -1.44 3.33 -9.92 -0.03 -1.47 16 28 H 0.11 1.03 7.74 -2.38 -0.02 1.01 16 29 C -0.14 -1.92 8.89 71.98 0.64 -1.28 16 30 H 0.10 1.89 8.05 -2.91 -0.02 1.87 16 31 H 0.12 1.91 5.72 -2.91 -0.02 1.89 16 32 H 0.05 1.33 7.39 -2.39 -0.02 1.31 16 33 H 0.07 1.32 8.06 -2.39 -0.02 1.30 16 34 H 0.06 1.27 6.79 -2.39 -0.02 1.26 16 35 H 0.08 0.86 8.04 -2.39 -0.02 0.84 16 36 H 0.09 0.97 7.28 -2.39 -0.02 0.95 16 37 H 0.04 0.84 7.71 -2.39 -0.02 0.82 16 38 H 0.06 0.69 6.91 -2.39 -0.02 0.68 16 39 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.08 0.47 7.23 -2.38 -0.02 0.45 16 41 H 0.42 4.64 7.31 -92.71 -0.68 3.96 16 42 H 0.05 1.51 7.85 -2.39 -0.02 1.49 16 43 H 0.04 1.76 6.92 -2.39 -0.02 1.75 16 44 H 0.13 3.16 8.11 -2.39 -0.02 3.14 16 45 H 0.08 2.13 7.90 -2.38 -0.02 2.11 16 46 H 0.39 15.58 5.76 -92.70 -0.53 15.04 16 47 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 48 H 0.08 1.04 7.77 -2.39 -0.02 1.02 16 49 H 0.09 1.64 7.69 -2.39 -0.02 1.62 16 50 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 51 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 52 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -91.78 406.80 0.90 -90.88 By element: Atomic # 1 Polarization: 40.17 SS G_CDS: -0.35 Total: 39.82 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 7.29 Total: 11.84 kcal Atomic # 7 Polarization: -117.53 SS G_CDS: -7.86 Total: -125.38 kcal Atomic # 8 Polarization: -58.37 SS G_CDS: -0.09 Total: -58.46 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 1.90 Total: 41.31 kcal Total: -91.78 0.90 -90.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208291911.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.719 kcal (2) G-P(sol) polarization free energy of solvation -91.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds