Wall clock time and date at job start Tue Mar 31 2020 20:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 119.99928 * 2 1 4 4 C 1.50700 * 120.00168 * 180.02562 * 2 1 3 5 5 C 1.53005 * 109.47335 * 94.99705 * 4 2 1 6 6 H 1.08998 * 109.46545 * 55.00197 * 5 4 2 7 7 C 1.53001 * 109.47062 * 295.00162 * 5 4 2 8 8 C 1.50702 * 109.47099 * 175.00175 * 5 4 2 9 9 O 1.21276 * 119.99862 * 359.97438 * 8 5 4 10 10 N 1.34770 * 119.99606 * 180.02562 * 8 5 4 11 11 C 1.46502 * 119.99871 * 179.97438 * 10 8 5 12 12 H 1.09002 * 110.27410 * 34.29629 * 11 10 8 13 13 C 1.53997 * 110.39204 * 272.15143 * 11 10 8 14 14 N 1.47904 * 107.05712 * 242.26562 * 13 11 10 15 15 C 1.46899 * 110.99783 * 214.15296 * 14 13 11 16 16 C 1.50693 * 109.47279 * 287.39780 * 15 14 13 17 17 O 1.21294 * 120.00613 * 359.97438 * 16 15 14 18 18 N 1.34782 * 120.00236 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00184 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99715 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99782 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00026 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00016 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47108 * 59.99969 * 23 21 19 25 25 H 1.48497 * 109.47434 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47317 * 300.00705 * 23 21 19 27 27 C 1.48528 * 105.82054 * 334.66803 * 14 13 11 28 28 C 1.54600 * 110.30933 * 156.38636 * 11 10 8 29 29 H 1.08994 * 110.72588 * 22.60990 * 28 11 10 30 30 C 1.52996 * 110.72068 * 259.32847 * 28 11 10 31 31 H 1.08000 * 120.00389 * 359.97438 * 1 2 3 32 32 H 1.08001 * 119.99809 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46943 * 240.00334 * 3 2 1 34 34 H 1.09004 * 109.46879 * 0.02562 * 3 2 1 35 35 H 1.08997 * 109.47200 * 120.00599 * 3 2 1 36 36 H 1.09002 * 109.47083 * 334.99905 * 4 2 1 37 37 H 1.08999 * 109.47021 * 214.99986 * 4 2 1 38 38 H 1.08995 * 109.46871 * 179.97438 * 7 5 4 39 39 H 1.09004 * 109.46994 * 299.99997 * 7 5 4 40 40 H 1.09001 * 109.47227 * 59.99735 * 7 5 4 41 41 H 0.97005 * 120.00508 * 359.97438 * 10 8 5 42 42 H 1.08998 * 109.91705 * 1.61781 * 13 11 10 43 43 H 1.08993 * 109.91821 * 122.90972 * 13 11 10 44 44 H 1.09005 * 109.46939 * 47.39696 * 15 14 13 45 45 H 1.09003 * 109.47125 * 167.39666 * 15 14 13 46 46 H 0.97003 * 119.99752 * 359.97438 * 18 16 15 47 47 H 0.96998 * 120.00203 * 180.02562 * 22 21 19 48 48 H 1.09004 * 110.66758 * 280.77502 * 27 14 13 49 49 H 1.08998 * 110.66622 * 157.64176 * 27 14 13 50 50 H 1.08999 * 109.47485 * 60.00237 * 30 28 11 51 51 H 1.09005 * 109.47239 * 180.02562 * 30 28 11 52 52 H 1.09001 * 109.47475 * 299.99599 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4378 6 1 2.9770 -0.8639 -1.9010 7 6 1.1487 -1.9539 -2.2333 8 6 3.2853 -2.9223 -1.4293 9 8 3.5773 -3.4504 -0.3773 10 7 3.7288 -3.4427 -2.5907 11 6 4.5633 -4.6468 -2.5824 12 1 4.2626 -5.3092 -1.7707 13 6 6.0494 -4.2687 -2.4412 14 7 6.7344 -4.7368 -3.6657 15 6 8.1029 -5.1794 -3.3668 16 6 8.9677 -3.9790 -3.0802 17 8 8.4912 -2.8644 -3.1213 18 7 10.2711 -4.1439 -2.7791 19 6 11.0580 -3.0518 -2.5189 20 1 10.6336 -2.0594 -2.5555 21 6 12.4016 -3.2219 -2.2080 22 7 12.9180 -4.4295 -2.1639 23 14 13.4740 -1.7340 -1.8541 24 1 12.9266 -0.9955 -0.6879 25 1 14.8574 -2.1814 -1.5524 26 1 13.4905 -0.8421 -3.0413 27 6 5.9130 -5.8601 -4.1849 28 6 4.4604 -5.3802 -3.9395 29 1 4.1426 -4.6949 -4.7252 30 6 3.5061 -6.5719 -3.8398 31 1 -0.5401 0.9353 0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 2.6900 1.3629 -0.8900 34 1 1.3551 2.1336 0.0005 35 1 2.6902 1.3628 0.8899 36 1 1.4386 -2.0856 0.4334 37 1 2.9742 -1.1990 0.5889 38 1 1.4079 -2.2229 -3.2572 39 1 0.5991 -2.7733 -1.7699 40 1 0.5281 -1.0578 -2.2394 41 1 3.4955 -3.0201 -3.4321 42 1 6.1504 -3.1873 -2.3496 43 1 6.4759 -4.7596 -1.5665 44 1 8.0907 -5.8347 -2.4959 45 1 8.5049 -5.7207 -4.2233 46 1 10.6523 -5.0353 -2.7466 47 1 13.8558 -4.5483 -1.9466 48 1 6.1155 -6.7746 -3.6272 49 1 6.0942 -6.0093 -5.2493 50 1 2.5147 -6.2206 -3.5535 51 1 3.4492 -7.0737 -4.8058 52 1 3.8747 -7.2709 -3.0890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208388484.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:56 Heat of formation + Delta-G solvation = -65.375829 kcal Electronic energy + Delta-G solvation = -29675.076628 eV Core-core repulsion = 25674.309601 eV Total energy + Delta-G solvation = -4000.767027 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.39097 -39.05981 -37.72798 -36.85188 -34.50500 -33.82549 -33.12160 -32.40107 -31.17762 -28.88301 -27.54313 -27.37646 -27.17820 -25.36348 -24.28794 -23.15621 -21.26136 -20.61863 -19.77369 -19.01938 -18.62161 -17.79692 -17.12291 -16.71634 -15.89655 -15.63137 -15.29800 -15.17003 -14.84524 -14.51820 -14.31063 -14.19713 -13.87998 -13.73719 -13.58328 -13.28606 -13.27400 -13.07073 -12.79376 -12.55826 -12.39609 -12.21164 -12.06957 -11.87762 -11.87269 -11.52904 -11.48912 -11.34154 -11.22688 -11.16253 -11.09999 -11.01238 -10.86605 -10.77469 -10.41619 -10.17855 -9.73547 -9.45011 -9.24763 -9.04214 -8.47478 -7.95958 -7.90017 -6.37823 -3.78404 1.96384 2.62905 3.13551 3.22618 3.27742 3.32317 3.94958 4.03746 4.25936 4.37522 4.47424 4.59493 4.64350 4.67314 4.82104 4.89407 4.92335 5.09182 5.17440 5.27770 5.27938 5.30261 5.36497 5.40023 5.42290 5.50500 5.52548 5.54476 5.59489 5.64747 5.72074 5.75300 5.76089 5.80461 5.83257 5.88260 5.91633 5.97672 6.01552 6.08493 6.30795 6.32687 6.39936 6.62170 6.65287 7.14154 7.22149 7.48139 7.58479 8.10003 8.21353 8.66381 9.22232 9.58877 10.11278 10.80082 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010138 B = 0.002661 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.155924 B =10518.459845 C =12840.477445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 C -0.123 4.123 4 C -0.068 4.068 5 C -0.105 4.105 6 H 0.100 0.900 7 C -0.144 4.144 8 C 0.518 3.482 9 O -0.540 6.540 10 N -0.716 5.716 11 C 0.138 3.862 12 H 0.093 0.907 13 C 0.036 3.964 14 N -0.490 5.490 15 C 0.036 3.964 16 C 0.445 3.555 17 O -0.577 6.577 18 N -0.566 5.566 19 C -0.297 4.297 20 H 0.102 0.898 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.037 3.963 28 C -0.099 4.099 29 H 0.089 0.911 30 C -0.142 4.142 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.401 0.599 42 H 0.095 0.905 43 H 0.046 0.954 44 H 0.051 0.949 45 H 0.089 0.911 46 H 0.391 0.609 47 H 0.271 0.729 48 H 0.046 0.954 49 H 0.085 0.915 50 H 0.056 0.944 51 H 0.060 0.940 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.339 -0.135 -1.975 24.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.119 4.119 3 C -0.179 4.179 4 C -0.106 4.106 5 C -0.126 4.126 6 H 0.118 0.882 7 C -0.202 4.202 8 C 0.304 3.696 9 O -0.416 6.416 10 N -0.367 5.367 11 C 0.033 3.967 12 H 0.111 0.889 13 C -0.093 4.093 14 N -0.214 5.214 15 C -0.096 4.096 16 C 0.231 3.769 17 O -0.460 6.460 18 N -0.204 5.204 19 C -0.427 4.427 20 H 0.119 0.881 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.092 4.092 28 C -0.119 4.119 29 H 0.107 0.893 30 C -0.199 4.199 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.235 0.765 42 H 0.113 0.887 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.107 0.893 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.065 0.935 49 H 0.103 0.897 50 H 0.076 0.924 51 H 0.079 0.921 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.177 0.595 -1.571 24.235 hybrid contribution 0.907 -0.345 0.382 1.043 sum -23.269 0.250 -1.189 23.301 Atomic orbital electron populations 1.23711 0.95134 1.01682 1.03098 1.21768 0.95415 0.95699 0.98980 1.20911 1.00296 0.94161 1.02571 1.20476 1.01013 0.94217 0.94887 1.21237 0.96853 0.96190 0.98364 0.88242 1.21836 0.96253 1.02769 0.99332 1.20621 0.79791 0.85462 0.83703 1.90706 1.58153 1.61795 1.30962 1.46041 1.52506 1.29244 1.08934 1.21967 0.90536 0.86134 0.98103 0.88892 1.23291 0.91435 1.03350 0.91226 1.64492 1.00506 1.29368 1.27058 1.22088 0.89950 0.96756 1.00784 1.19719 0.83081 0.89940 0.84209 1.90506 1.73375 1.25580 1.56563 1.41854 1.07399 1.09850 1.61262 1.19633 0.90548 0.88698 1.43804 0.88058 1.25247 0.97344 0.97864 0.97543 1.69603 1.14700 1.20996 1.49196 0.85928 0.78409 0.80852 0.79088 1.19939 1.20996 1.19924 1.23333 0.91475 0.93165 1.01181 1.22324 0.95554 0.97383 0.96619 0.89309 1.21772 0.98847 0.97250 1.02074 0.88622 0.88551 0.91374 0.92092 0.91389 0.90692 0.90177 0.92187 0.92233 0.91012 0.76451 0.88682 0.93576 0.93149 0.89263 0.77543 0.91881 0.93540 0.89686 0.92443 0.92107 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.50 12.51 29.02 0.36 -1.13 16 2 C -0.12 -1.01 4.79 -101.06 -0.48 -1.49 16 3 C -0.12 -0.96 10.12 36.01 0.36 -0.60 16 4 C -0.07 -0.69 4.22 -27.88 -0.12 -0.80 16 5 C -0.11 -1.00 2.71 -91.77 -0.25 -1.25 16 6 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 7 C -0.14 -1.03 8.72 37.16 0.32 -0.71 16 8 C 0.52 6.59 7.15 -10.99 -0.08 6.51 16 9 O -0.54 -9.03 15.59 5.56 0.09 -8.95 16 10 N -0.72 -8.12 4.91 -52.49 -0.26 -8.38 16 11 C 0.14 1.76 2.89 -66.57 -0.19 1.57 16 12 H 0.09 1.27 7.31 -51.93 -0.38 0.89 16 13 C 0.04 0.61 5.66 -2.75 -0.02 0.59 16 14 N -0.49 -8.18 4.91 -231.89 -1.14 -9.32 16 15 C 0.04 0.66 5.27 -4.98 -0.03 0.63 16 16 C 0.45 10.80 7.61 -10.99 -0.08 10.72 16 17 O -0.58 -15.94 14.87 5.54 0.08 -15.86 16 18 N -0.57 -14.70 5.29 -10.96 -0.06 -14.76 16 19 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 20 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.98 13.05 55.50 0.72 -24.26 16 23 Si 0.93 21.45 29.55 -169.99 -5.02 16.43 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 C 0.04 0.45 5.96 -1.90 -0.01 0.43 16 28 C -0.10 -1.01 3.37 -88.76 -0.30 -1.31 16 29 H 0.09 0.85 7.75 -51.93 -0.40 0.44 16 30 C -0.14 -1.15 9.16 37.16 0.34 -0.81 16 31 H 0.10 0.62 7.83 -52.49 -0.41 0.21 16 32 H 0.10 0.68 7.99 -52.49 -0.42 0.26 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.41 7.78 -51.93 -0.40 0.00 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.78 7.99 -51.93 -0.41 0.37 16 37 H 0.08 0.94 7.95 -51.93 -0.41 0.53 16 38 H 0.06 0.36 7.57 -51.93 -0.39 -0.04 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.47 6.52 -51.93 -0.34 0.13 16 41 H 0.40 3.59 7.78 -40.82 -0.32 3.27 16 42 H 0.09 1.92 7.32 -51.93 -0.38 1.54 16 43 H 0.05 0.83 7.52 -51.93 -0.39 0.44 16 44 H 0.05 0.86 7.73 -51.93 -0.40 0.46 16 45 H 0.09 1.46 8.08 -51.93 -0.42 1.04 16 46 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 47 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.05 0.53 7.89 -51.93 -0.41 0.12 16 49 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 51 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 52 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 LS Contribution 418.31 15.07 6.30 6.30 Total: -1.00 -33.71 418.31 -8.79 -42.51 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -9.11 Total: 12.04 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -0.41 Total: 4.24 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.73 Total: -56.72 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: 0.17 Total: -24.81 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.71 -8.79 -42.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208388484.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.868 kcal (2) G-P(sol) polarization free energy of solvation -33.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds