Wall clock time and date at job start Tue Mar 31 2020 20:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 119.99928 * 2 1 4 4 C 1.50700 * 120.00168 * 180.02562 * 2 1 3 5 5 C 1.53005 * 109.47335 * 94.99705 * 4 2 1 6 6 H 1.08998 * 109.46545 * 55.00197 * 5 4 2 7 7 C 1.53001 * 109.47062 * 295.00162 * 5 4 2 8 8 C 1.50702 * 109.47099 * 175.00175 * 5 4 2 9 9 O 1.21276 * 119.99862 * 359.97438 * 8 5 4 10 10 N 1.34770 * 119.99606 * 180.02562 * 8 5 4 11 11 C 1.46502 * 119.99871 * 179.97438 * 10 8 5 12 12 H 1.09002 * 110.27410 * 34.29629 * 11 10 8 13 13 C 1.53997 * 110.39204 * 272.15143 * 11 10 8 14 14 N 1.47904 * 107.05712 * 242.26562 * 13 11 10 15 15 C 1.46899 * 110.99783 * 214.15296 * 14 13 11 16 16 C 1.50693 * 109.47279 * 287.39780 * 15 14 13 17 17 O 1.21294 * 120.00613 * 359.97438 * 16 15 14 18 18 N 1.34782 * 120.00236 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00184 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99715 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99782 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00026 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00016 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47108 * 59.99969 * 23 21 19 25 25 H 1.48497 * 109.47434 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47317 * 300.00705 * 23 21 19 27 27 C 1.48528 * 105.82054 * 334.66803 * 14 13 11 28 28 C 1.54600 * 110.30933 * 156.38636 * 11 10 8 29 29 H 1.08994 * 110.72588 * 22.60990 * 28 11 10 30 30 C 1.52996 * 110.72068 * 259.32847 * 28 11 10 31 31 H 1.08000 * 120.00389 * 359.97438 * 1 2 3 32 32 H 1.08001 * 119.99809 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46943 * 240.00334 * 3 2 1 34 34 H 1.09004 * 109.46879 * 0.02562 * 3 2 1 35 35 H 1.08997 * 109.47200 * 120.00599 * 3 2 1 36 36 H 1.09002 * 109.47083 * 334.99905 * 4 2 1 37 37 H 1.08999 * 109.47021 * 214.99986 * 4 2 1 38 38 H 1.08995 * 109.46871 * 179.97438 * 7 5 4 39 39 H 1.09004 * 109.46994 * 299.99997 * 7 5 4 40 40 H 1.09001 * 109.47227 * 59.99735 * 7 5 4 41 41 H 0.97005 * 120.00508 * 359.97438 * 10 8 5 42 42 H 1.08998 * 109.91705 * 1.61781 * 13 11 10 43 43 H 1.08993 * 109.91821 * 122.90972 * 13 11 10 44 44 H 1.09005 * 109.46939 * 47.39696 * 15 14 13 45 45 H 1.09003 * 109.47125 * 167.39666 * 15 14 13 46 46 H 0.97003 * 119.99752 * 359.97438 * 18 16 15 47 47 H 0.96998 * 120.00203 * 180.02562 * 22 21 19 48 48 H 1.09004 * 110.66758 * 280.77502 * 27 14 13 49 49 H 1.08998 * 110.66622 * 157.64176 * 27 14 13 50 50 H 1.08999 * 109.47485 * 60.00237 * 30 28 11 51 51 H 1.09005 * 109.47239 * 180.02562 * 30 28 11 52 52 H 1.09001 * 109.47475 * 299.99599 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4378 6 1 2.9770 -0.8639 -1.9010 7 6 1.1487 -1.9539 -2.2333 8 6 3.2853 -2.9223 -1.4293 9 8 3.5773 -3.4504 -0.3773 10 7 3.7288 -3.4427 -2.5907 11 6 4.5633 -4.6468 -2.5824 12 1 4.2626 -5.3092 -1.7707 13 6 6.0494 -4.2687 -2.4412 14 7 6.7344 -4.7368 -3.6657 15 6 8.1029 -5.1794 -3.3668 16 6 8.9677 -3.9790 -3.0802 17 8 8.4912 -2.8644 -3.1213 18 7 10.2711 -4.1439 -2.7791 19 6 11.0580 -3.0518 -2.5189 20 1 10.6336 -2.0594 -2.5555 21 6 12.4016 -3.2219 -2.2080 22 7 12.9180 -4.4295 -2.1639 23 14 13.4740 -1.7340 -1.8541 24 1 12.9266 -0.9955 -0.6879 25 1 14.8574 -2.1814 -1.5524 26 1 13.4905 -0.8421 -3.0413 27 6 5.9130 -5.8601 -4.1849 28 6 4.4604 -5.3802 -3.9395 29 1 4.1426 -4.6949 -4.7252 30 6 3.5061 -6.5719 -3.8398 31 1 -0.5401 0.9353 0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 2.6900 1.3629 -0.8900 34 1 1.3551 2.1336 0.0005 35 1 2.6902 1.3628 0.8899 36 1 1.4386 -2.0856 0.4334 37 1 2.9742 -1.1990 0.5889 38 1 1.4079 -2.2229 -3.2572 39 1 0.5991 -2.7733 -1.7699 40 1 0.5281 -1.0578 -2.2394 41 1 3.4955 -3.0201 -3.4321 42 1 6.1504 -3.1873 -2.3496 43 1 6.4759 -4.7596 -1.5665 44 1 8.0907 -5.8347 -2.4959 45 1 8.5049 -5.7207 -4.2233 46 1 10.6523 -5.0353 -2.7466 47 1 13.8558 -4.5483 -1.9466 48 1 6.1155 -6.7746 -3.6272 49 1 6.0942 -6.0093 -5.2493 50 1 2.5147 -6.2206 -3.5535 51 1 3.4492 -7.0737 -4.8058 52 1 3.8747 -7.2709 -3.0890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208388484.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:55 Heat of formation + Delta-G solvation = -89.581063 kcal Electronic energy + Delta-G solvation = -29676.126246 eV Core-core repulsion = 25674.309601 eV Total energy + Delta-G solvation = -4001.816644 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.46572 -40.44057 -39.33751 -37.67837 -36.06849 -35.49813 -34.05309 -33.31931 -33.20568 -30.13989 -28.68792 -28.11207 -27.91940 -26.83850 -25.68504 -24.21559 -22.38369 -21.78109 -20.88707 -20.66267 -19.85924 -19.31880 -18.12921 -17.76003 -17.59440 -16.80842 -16.56976 -16.40972 -16.26035 -15.74233 -15.53892 -15.41069 -15.14640 -15.07373 -14.60364 -14.31217 -14.18215 -14.07364 -13.92146 -13.56785 -13.52524 -13.31527 -13.28230 -13.06983 -12.95361 -12.94957 -12.51184 -12.48158 -12.45449 -12.28644 -12.20372 -12.14420 -11.93999 -11.87909 -11.86225 -11.67095 -11.50610 -10.77704 -10.36170 -10.12254 -10.02591 -9.89361 -9.36574 -8.48100 -5.96966 1.32190 1.37630 1.38878 1.50196 1.60096 2.03817 2.18707 2.26910 2.78361 3.17659 3.29183 3.53776 3.62949 3.64975 3.87464 3.92205 3.99963 4.13909 4.18186 4.23360 4.27357 4.31082 4.41032 4.43943 4.49215 4.57102 4.65774 4.66691 4.79555 4.81467 4.83989 4.85738 4.90441 4.93954 4.94834 5.05258 5.07746 5.13723 5.18770 5.20349 5.28985 5.35335 5.38382 5.54053 5.76206 5.79277 5.91190 6.00465 6.06389 6.53217 6.59079 7.11155 7.23182 7.54433 8.10842 8.69271 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010138 B = 0.002661 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.155924 B =10518.459845 C =12840.477445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.134 4.134 3 C -0.123 4.123 4 C -0.065 4.065 5 C -0.099 4.099 6 H 0.106 0.894 7 C -0.137 4.137 8 C 0.512 3.488 9 O -0.587 6.587 10 N -0.705 5.705 11 C 0.145 3.855 12 H 0.084 0.916 13 C 0.040 3.960 14 N -0.507 5.507 15 C 0.048 3.952 16 C 0.440 3.560 17 O -0.616 6.616 18 N -0.576 5.576 19 C -0.333 4.333 20 H 0.077 0.923 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.274 1.274 25 H -0.268 1.268 26 H -0.270 1.270 27 C 0.036 3.964 28 C -0.085 4.085 29 H 0.103 0.897 30 C -0.135 4.135 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.415 0.585 42 H 0.052 0.948 43 H 0.023 0.977 44 H 0.065 0.935 45 H 0.117 0.883 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.059 0.941 49 H 0.104 0.896 50 H 0.063 0.937 51 H 0.080 0.920 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.989 -0.610 -3.607 26.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.134 4.134 3 C -0.180 4.180 4 C -0.103 4.103 5 C -0.120 4.120 6 H 0.124 0.876 7 C -0.194 4.194 8 C 0.300 3.700 9 O -0.467 6.467 10 N -0.357 5.357 11 C 0.039 3.961 12 H 0.102 0.898 13 C -0.089 4.089 14 N -0.232 5.232 15 C -0.084 4.084 16 C 0.227 3.773 17 O -0.502 6.502 18 N -0.214 5.214 19 C -0.463 4.463 20 H 0.095 0.905 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.199 1.199 25 H -0.193 1.193 26 H -0.195 1.195 27 C -0.091 4.091 28 C -0.104 4.104 29 H 0.121 0.879 30 C -0.193 4.193 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.252 0.748 42 H 0.071 0.929 43 H 0.041 0.959 44 H 0.083 0.917 45 H 0.135 0.865 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.122 0.878 50 H 0.082 0.918 51 H 0.099 0.901 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.844 0.095 -3.246 26.047 hybrid contribution 1.401 -0.204 0.902 1.678 sum -24.443 -0.109 -2.343 24.555 Atomic orbital electron populations 1.23877 0.94617 1.02678 1.00918 1.21682 0.95816 0.94955 1.00910 1.20920 1.00519 0.94399 1.02126 1.20391 0.99853 0.95180 0.94865 1.21253 0.97634 0.94493 0.98630 0.87590 1.21816 0.94722 1.03275 0.99632 1.21276 0.79522 0.85956 0.83206 1.90681 1.59987 1.63347 1.32648 1.45966 1.51530 1.28833 1.09363 1.21832 0.87851 0.86645 0.99761 0.89768 1.23127 0.94494 1.00471 0.90814 1.64410 1.00197 1.31971 1.26587 1.21960 0.90046 0.93902 1.02473 1.20819 0.82905 0.91347 0.82241 1.90475 1.74049 1.27903 1.57787 1.41933 1.08091 1.09451 1.61880 1.19596 0.91795 0.88610 1.46279 0.90545 1.26044 0.97883 1.00834 0.96574 1.69665 1.15304 1.22375 1.48819 0.84999 0.77104 0.77489 0.78806 1.19925 1.19270 1.19535 1.23515 0.91501 0.92014 1.02120 1.22316 0.95102 0.98180 0.94847 0.87913 1.21737 0.98283 0.96098 1.03178 0.87094 0.88013 0.91553 0.90589 0.92248 0.91453 0.92973 0.90503 0.92382 0.89864 0.74795 0.92904 0.95905 0.91738 0.86523 0.77049 0.91270 0.92288 0.87760 0.91793 0.90080 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 12.51 67.79 0.85 -1.58 16 2 C -0.13 -2.20 4.79 -16.48 -0.08 -2.28 16 3 C -0.12 -1.88 10.12 71.24 0.72 -1.16 16 4 C -0.06 -1.36 4.22 29.85 0.13 -1.23 16 5 C -0.10 -1.87 2.71 -11.54 -0.03 -1.90 16 6 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 7 C -0.14 -1.70 8.72 71.98 0.63 -1.07 16 8 C 0.51 13.42 7.15 87.66 0.63 14.05 16 9 O -0.59 -20.82 15.59 -3.02 -0.05 -20.87 16 10 N -0.71 -15.84 4.91 -438.37 -2.15 -17.99 16 11 C 0.15 3.68 2.89 45.87 0.13 3.81 16 12 H 0.08 2.32 7.31 -2.39 -0.02 2.31 16 13 C 0.04 1.42 5.66 86.45 0.49 1.91 16 14 N -0.51 -16.71 4.91 -887.58 -4.36 -21.07 16 15 C 0.05 1.73 5.27 85.55 0.45 2.18 16 16 C 0.44 21.98 7.61 87.65 0.67 22.64 16 17 O -0.62 -35.64 14.87 -3.07 -0.05 -35.69 16 18 N -0.58 -30.78 5.29 -306.98 -1.62 -32.41 16 19 C -0.33 -19.58 9.68 84.04 0.81 -18.76 16 20 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 21 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 22 N -0.92 -50.88 13.05 21.66 0.28 -50.60 16 23 Si 0.99 44.12 29.55 68.60 2.03 46.15 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 27 C 0.04 0.77 5.96 86.65 0.52 1.29 16 28 C -0.09 -1.53 3.37 -9.59 -0.03 -1.56 16 29 H 0.10 1.61 7.75 -2.39 -0.02 1.59 16 30 C -0.14 -1.75 9.16 71.98 0.66 -1.09 16 31 H 0.11 1.15 7.83 -2.91 -0.02 1.13 16 32 H 0.10 1.23 7.99 -2.91 -0.02 1.21 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 0.91 7.78 -2.38 -0.02 0.89 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 36 H 0.07 1.47 7.99 -2.39 -0.02 1.45 16 37 H 0.05 1.35 7.95 -2.39 -0.02 1.34 16 38 H 0.08 0.70 7.57 -2.39 -0.02 0.68 16 39 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.08 0.88 6.52 -2.39 -0.02 0.86 16 41 H 0.41 6.86 7.78 -92.70 -0.72 6.14 16 42 H 0.05 2.28 7.32 -2.39 -0.02 2.26 16 43 H 0.02 0.88 7.52 -2.39 -0.02 0.86 16 44 H 0.06 2.17 7.73 -2.38 -0.02 2.15 16 45 H 0.12 3.60 8.08 -2.39 -0.02 3.58 16 46 H 0.40 20.03 7.90 -92.71 -0.73 19.29 16 47 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 48 H 0.06 1.17 7.89 -2.39 -0.02 1.15 16 49 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 52 H 0.05 0.77 8.10 -2.39 -0.02 0.75 16 Total: -1.00 -77.02 418.31 0.54 -76.48 By element: Atomic # 1 Polarization: 41.58 SS G_CDS: -0.54 Total: 41.04 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 7.00 Total: 14.96 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -7.85 Total: -122.06 kcal Atomic # 8 Polarization: -56.47 SS G_CDS: -0.09 Total: -56.56 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -77.02 0.54 -76.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208388484.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.104 kcal (2) G-P(sol) polarization free energy of solvation -77.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds