Wall clock time and date at job start Tue Mar 31 2020 20:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46993 * 2 1 4 4 C 1.50703 * 109.46948 * 119.99856 * 2 1 3 5 5 O 1.21275 * 120.00103 * 94.42449 * 4 2 1 6 6 N 1.34781 * 120.00104 * 274.41773 * 4 2 1 7 7 C 1.46929 * 120.62979 * 5.31934 * 6 4 2 8 8 C 1.53194 * 108.77432 * 126.36395 * 7 6 4 9 9 C 1.53034 * 109.31153 * 54.63467 * 8 7 6 10 10 C 1.53041 * 109.54273 * 298.63425 * 9 8 7 11 11 H 1.08996 * 109.49231 * 301.41431 * 10 9 8 12 12 N 1.46897 * 109.50043 * 181.35052 * 10 9 8 13 13 C 1.46894 * 111.00272 * 84.99837 * 12 10 9 14 14 C 1.50696 * 109.47224 * 180.02562 * 13 12 10 15 15 O 1.21291 * 120.00061 * 359.97438 * 14 13 12 16 16 N 1.34778 * 119.99984 * 180.02562 * 14 13 12 17 17 C 1.37096 * 119.99943 * 179.97438 * 16 14 13 18 18 H 1.08005 * 120.00228 * 0.02562 * 17 16 14 19 19 C 1.38953 * 119.99772 * 180.02562 * 17 16 14 20 20 N 1.31410 * 120.00332 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99945 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47344 * 89.99398 * 21 19 17 23 23 H 1.48499 * 109.47343 * 209.99749 * 21 19 17 24 24 H 1.48500 * 109.47077 * 329.99966 * 21 19 17 25 25 C 1.46917 * 120.62967 * 185.03261 * 6 4 2 26 26 C 1.52994 * 109.47376 * 239.99976 * 2 1 3 27 27 C 1.53787 * 113.61771 * 180.02562 * 26 2 1 28 28 C 1.53774 * 87.08176 * 220.01731 * 27 26 2 29 29 C 1.53782 * 87.08464 * 25.42987 * 28 27 26 30 30 H 1.08998 * 109.46542 * 174.98650 * 1 2 3 31 31 H 1.08994 * 109.46944 * 294.98686 * 1 2 3 32 32 H 1.08999 * 109.46849 * 54.98609 * 1 2 3 33 33 H 1.08999 * 109.58463 * 246.15280 * 7 6 4 34 34 H 1.08999 * 109.58112 * 6.57929 * 7 6 4 35 35 H 1.08995 * 109.49605 * 174.58760 * 8 7 6 36 36 H 1.08998 * 109.49465 * 294.65136 * 8 7 6 37 37 H 1.09003 * 109.45864 * 58.65312 * 9 8 7 38 38 H 1.09003 * 109.46241 * 178.61063 * 9 8 7 39 39 H 1.00903 * 110.99649 * 321.04277 * 12 10 9 40 40 H 1.09000 * 109.46897 * 300.00177 * 13 12 10 41 41 H 1.08999 * 109.47238 * 59.99764 * 13 12 10 42 42 H 0.97001 * 120.00268 * 0.02562 * 16 14 13 43 43 H 0.96993 * 120.00179 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.59127 * 353.42545 * 25 6 4 45 45 H 1.09007 * 109.58269 * 113.84722 * 25 6 4 46 46 H 1.09006 * 112.90689 * 311.24948 * 26 2 1 47 47 H 1.08997 * 113.61213 * 105.46435 * 27 26 2 48 48 H 1.08997 * 113.60989 * 334.56762 * 27 26 2 49 49 H 1.09001 * 113.61575 * 139.97815 * 28 27 26 50 50 H 1.09003 * 113.61625 * 270.88157 * 28 27 26 51 51 H 1.09001 * 113.61365 * 89.11209 * 29 28 27 52 52 H 1.08995 * 113.61721 * 219.93429 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3108 -1.8896 1.1787 6 7 2.1722 -0.0352 2.3886 7 6 1.7306 1.3618 2.4986 8 6 0.7811 1.4861 3.6944 9 6 1.4724 0.9448 4.9479 10 6 1.8075 -0.5352 4.7490 11 1 0.8923 -1.0912 4.5459 12 7 2.4418 -1.0620 5.9647 13 6 1.4322 -1.4873 6.9433 14 6 2.1189 -2.0201 8.1744 15 8 3.3303 -2.0436 8.2308 16 7 1.3871 -2.4713 9.2123 17 6 2.0118 -2.9565 10.3320 18 1 3.0905 -2.9767 10.3826 19 6 1.2573 -3.4222 11.4018 20 7 -0.0552 -3.3972 11.3405 21 14 2.1085 -4.0826 12.9278 22 1 2.3316 -2.9733 13.8894 23 1 1.2561 -5.1215 13.5597 24 1 3.4147 -4.6780 12.5475 25 6 2.7633 -0.6841 3.5667 26 6 2.0401 -0.7212 -1.2492 27 6 3.5739 -0.7773 -1.3451 28 6 3.4113 -0.5055 -2.8499 29 6 2.0727 0.1677 -2.5036 30 1 -0.3632 -1.0238 -0.0898 31 1 -0.3633 0.4341 0.9314 32 1 -0.3633 0.5896 -0.8417 33 1 2.5956 2.0076 2.6501 34 1 1.2097 1.6532 1.5866 35 1 0.5219 2.5339 3.8457 36 1 -0.1246 0.9114 3.5010 37 1 2.3908 1.5042 5.1263 38 1 0.8081 1.0547 5.8051 39 1 3.0719 -0.3841 6.3666 40 1 0.8086 -0.6357 7.2154 41 1 0.8098 -2.2687 6.5071 42 1 0.4183 -2.4536 9.1668 43 1 -0.5818 -3.7226 12.0872 44 1 2.9237 -1.7421 3.3593 45 1 3.7143 -0.2086 3.8071 46 1 1.5573 -1.6854 -1.4093 47 1 3.9897 -1.7597 -1.1212 48 1 4.0747 0.0279 -0.8076 49 1 4.1548 0.1825 -3.2522 50 1 3.3031 -1.4105 -3.4479 51 1 2.1631 1.2312 -2.2828 52 1 1.2770 -0.0506 -3.2159 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208399878.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:45 Heat of formation + Delta-G solvation = -84.332190 kcal Electronic energy + Delta-G solvation = -29623.246013 eV Core-core repulsion = 25621.656976 eV Total energy + Delta-G solvation = -4001.589036 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.65597 -40.31613 -39.65358 -38.50354 -36.42332 -35.81422 -34.01130 -33.30148 -33.05940 -31.10575 -27.95754 -27.13763 -26.44543 -26.25150 -25.83452 -23.62841 -23.32679 -21.73606 -21.14842 -20.42030 -19.96690 -19.58660 -18.33629 -17.80389 -17.19900 -16.88520 -16.41422 -16.28777 -16.15693 -16.07704 -15.66554 -15.51583 -15.29747 -15.07515 -14.75384 -14.50527 -14.31273 -13.95756 -13.64075 -13.51534 -13.43641 -13.33249 -13.30170 -13.25525 -13.01917 -12.88594 -12.63248 -12.44165 -12.40621 -12.15796 -12.13497 -12.03963 -11.85211 -11.69790 -11.52568 -11.40905 -11.25826 -10.98066 -10.56167 -10.40773 -10.04089 -9.73261 -9.28132 -8.48612 -5.97629 1.36653 1.40589 1.53597 1.64388 1.92035 2.01716 2.28302 2.92530 3.18228 3.39441 3.49293 3.67750 3.73480 3.76162 3.83484 3.95166 3.98470 4.06690 4.13203 4.25425 4.26911 4.29830 4.36141 4.41435 4.42020 4.53085 4.56817 4.62526 4.79466 4.82280 4.82668 4.85126 4.88774 4.90035 4.96440 5.01639 5.06743 5.10595 5.15900 5.17928 5.26996 5.34692 5.39032 5.40132 5.47949 5.62995 5.86365 6.06135 6.36484 6.45538 6.57399 7.10095 7.21363 7.52987 8.08212 8.68758 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026073 B = 0.001893 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.632095 B =14784.821374 C =15134.034605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 H 0.120 0.880 4 C 0.512 3.488 5 O -0.587 6.587 6 N -0.610 5.610 7 C 0.098 3.902 8 C -0.124 4.124 9 C -0.148 4.148 10 C 0.084 3.916 11 H 0.070 0.930 12 N -0.679 5.679 13 C 0.070 3.930 14 C 0.437 3.563 15 O -0.623 6.623 16 N -0.572 5.572 17 C -0.335 4.335 18 H 0.079 0.921 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.994 3.006 22 H -0.269 1.269 23 H -0.270 1.270 24 H -0.274 1.274 25 C 0.128 3.872 26 C -0.096 4.096 27 C -0.144 4.144 28 C -0.140 4.140 29 C -0.119 4.119 30 H 0.044 0.956 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.349 0.651 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.040 0.960 48 H 0.078 0.922 49 H 0.077 0.923 50 H 0.076 0.924 51 H 0.100 0.900 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.163 16.592 -27.228 32.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 H 0.138 0.862 4 C 0.302 3.698 5 O -0.466 6.466 6 N -0.342 5.342 7 C -0.023 4.023 8 C -0.163 4.163 9 C -0.187 4.187 10 C -0.027 4.027 11 H 0.088 0.912 12 N -0.311 5.311 13 C -0.062 4.062 14 C 0.225 3.775 15 O -0.509 6.509 16 N -0.209 5.209 17 C -0.465 4.465 18 H 0.097 0.903 19 C -0.213 4.213 20 N -0.560 5.560 21 Si 0.818 3.182 22 H -0.194 1.194 23 H -0.195 1.195 24 H -0.199 1.199 25 C 0.004 3.996 26 C -0.115 4.115 27 C -0.182 4.182 28 C -0.177 4.177 29 C -0.156 4.156 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.132 0.868 35 H 0.122 0.878 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.169 0.831 40 H 0.089 0.911 41 H 0.113 0.887 42 H 0.230 0.770 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.059 0.941 48 H 0.097 0.903 49 H 0.096 0.904 50 H 0.095 0.905 51 H 0.118 0.882 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.271 15.259 -27.327 31.381 hybrid contribution -0.250 -0.242 1.623 1.660 sum -2.521 15.016 -25.704 29.875 Atomic orbital electron populations 1.21767 0.91287 1.02597 1.04041 1.21439 0.98603 1.00786 0.90476 0.86207 1.21442 0.76411 0.86695 0.85215 1.90681 1.52315 1.18117 1.85537 1.48244 1.61388 1.14288 1.10320 1.22142 0.99200 0.80243 1.00705 1.21860 0.98121 1.03171 0.93120 1.22265 1.01842 0.95140 0.99473 1.21758 0.96558 0.95020 0.89360 0.91184 1.59930 1.18779 1.46275 1.06108 1.21490 0.93774 1.00669 0.90269 1.20835 0.87774 0.83244 0.85685 1.90491 1.15864 1.61736 1.82844 1.41924 1.09224 1.55444 1.14325 1.19676 0.93115 1.39594 0.94083 0.90325 1.26063 0.96122 0.97233 1.01883 1.69668 1.05197 1.47159 1.34010 0.84910 0.77848 0.78236 0.77231 1.19387 1.19506 1.19938 1.21165 0.95745 0.98489 0.84181 1.22400 0.95839 0.99232 0.93987 1.22930 0.96498 1.00839 0.97914 1.22808 0.98637 1.01146 0.95160 1.22936 0.97427 0.99518 0.95699 0.93726 0.91287 0.88665 0.89735 0.86781 0.87757 0.91593 0.90775 0.91614 0.83145 0.91083 0.88671 0.76969 0.91246 0.91978 0.91082 0.90655 0.94109 0.90304 0.90394 0.90485 0.88169 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.87 71.98 0.64 -0.84 16 2 C -0.09 -1.26 1.61 -11.54 -0.02 -1.28 16 3 H 0.12 0.95 6.53 -2.38 -0.02 0.93 16 4 C 0.51 11.74 6.35 87.66 0.56 12.29 16 5 O -0.59 -19.63 15.42 -3.01 -0.05 -19.68 16 6 N -0.61 -12.04 2.98 -819.73 -2.44 -14.48 16 7 C 0.10 1.05 5.93 86.36 0.51 1.56 16 8 C -0.12 -1.39 6.08 30.67 0.19 -1.21 16 9 C -0.15 -2.60 5.14 30.62 0.16 -2.44 16 10 C 0.08 2.08 2.60 44.85 0.12 2.19 16 11 H 0.07 1.87 7.80 -2.39 -0.02 1.85 16 12 N -0.68 -22.24 5.88 -495.95 -2.92 -25.16 16 13 C 0.07 2.50 5.97 85.56 0.51 3.01 16 14 C 0.44 21.36 7.82 87.66 0.69 22.05 16 15 O -0.62 -35.40 15.78 -3.06 -0.05 -35.45 16 16 N -0.57 -29.98 5.29 -306.98 -1.62 -31.61 16 17 C -0.34 -19.38 9.68 84.04 0.81 -18.57 16 18 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 19 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 20 N -0.92 -50.12 13.05 21.66 0.28 -49.83 16 21 Si 0.99 43.50 29.55 68.60 2.03 45.53 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 25 C 0.13 3.29 6.02 86.22 0.52 3.81 16 26 C -0.10 -1.48 2.60 -10.27 -0.03 -1.51 16 27 C -0.14 -2.53 6.84 31.12 0.21 -2.31 16 28 C -0.14 -1.71 8.08 31.12 0.25 -1.46 16 29 C -0.12 -1.10 7.63 31.12 0.24 -0.87 16 30 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.63 7.20 -2.39 -0.02 0.61 16 32 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.11 0.62 4.89 -2.39 -0.01 0.61 16 35 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.22 7.43 -2.39 -0.02 1.20 16 39 H 0.35 11.58 8.18 -89.69 -0.73 10.84 16 40 H 0.07 2.15 7.42 -2.39 -0.02 2.13 16 41 H 0.10 3.22 8.06 -2.39 -0.02 3.20 16 42 H 0.40 19.69 7.90 -92.71 -0.73 18.95 16 43 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 44 H 0.06 2.08 7.00 -2.39 -0.02 2.06 16 45 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 46 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 47 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.08 1.30 8.10 -2.39 -0.02 1.28 16 49 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.10 0.58 7.96 -2.39 -0.02 0.56 16 52 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -76.13 407.63 0.51 -75.61 By element: Atomic # 1 Polarization: 41.41 SS G_CDS: -0.54 Total: 40.87 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 5.82 Total: 14.19 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -6.70 Total: -121.07 kcal Atomic # 8 Polarization: -55.03 SS G_CDS: -0.09 Total: -55.13 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -76.13 0.51 -75.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208399878.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.718 kcal (2) G-P(sol) polarization free energy of solvation -76.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds