Wall clock time and date at job start Tue Mar 31 2020 20:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 110.64354 * 2 1 4 4 C 1.54336 * 110.85088 * 236.83204 * 2 1 3 5 5 N 1.47029 * 107.26361 * 219.67259 * 4 2 1 6 6 C 1.36940 * 125.64310 * 178.85067 * 5 4 2 7 7 H 1.07993 * 120.00123 * 344.02478 * 6 5 4 8 8 C 1.38807 * 119.99719 * 164.03124 * 6 5 4 9 9 N 1.31630 * 119.99903 * 350.52800 * 8 6 5 10 10 Si 1.86801 * 120.00313 * 170.25873 * 8 6 5 11 11 H 1.48495 * 109.47235 * 84.94445 * 10 8 6 12 12 H 1.48493 * 109.47247 * 204.94905 * 10 8 6 13 13 H 1.48502 * 109.46666 * 324.94738 * 10 8 6 14 14 C 1.47419 * 108.70434 * 358.58479 * 5 4 2 15 15 C 1.54915 * 104.83366 * 24.35516 * 14 5 4 16 16 H 1.08999 * 111.00301 * 81.06336 * 15 14 5 17 17 N 1.46493 * 111.00385 * 204.87708 * 15 14 5 18 18 C 1.34783 * 120.00241 * 273.54796 * 17 15 14 19 19 O 1.21279 * 119.99662 * 359.97438 * 18 17 15 20 20 C 1.50699 * 119.99976 * 180.02562 * 18 17 15 21 21 C 1.53004 * 109.47054 * 179.97438 * 20 18 17 22 22 C 1.50695 * 109.47230 * 179.97438 * 21 20 18 23 23 O 1.21285 * 120.00227 * 0.02562 * 22 21 20 24 24 N 1.34774 * 119.99974 * 180.02562 * 22 21 20 25 25 C 1.46505 * 120.00106 * 180.02562 * 24 22 21 26 26 C 1.54263 * 110.03200 * 272.90701 * 25 24 22 27 27 C 1.54956 * 104.16160 * 217.13636 * 26 25 24 28 28 C 1.54891 * 102.77917 * 37.88417 * 27 26 25 29 29 C 1.53872 * 110.03529 * 155.68783 * 25 24 22 30 30 H 1.09003 * 109.47219 * 296.85999 * 1 2 3 31 31 H 1.09003 * 109.47282 * 56.85840 * 1 2 3 32 32 H 1.09000 * 109.47097 * 176.86308 * 1 2 3 33 33 H 1.08996 * 109.98992 * 100.19544 * 4 2 1 34 34 H 1.09000 * 109.77791 * 339.02460 * 4 2 1 35 35 H 0.97002 * 119.99547 * 179.72601 * 9 8 6 36 36 H 1.08999 * 110.36646 * 143.19401 * 14 5 4 37 37 H 1.09006 * 110.36980 * 265.51826 * 14 5 4 38 38 H 0.96998 * 120.00208 * 93.54704 * 17 15 14 39 39 H 1.09001 * 109.47191 * 299.99887 * 20 18 17 40 40 H 1.08999 * 109.47303 * 59.99872 * 20 18 17 41 41 H 1.09002 * 109.46930 * 300.00474 * 21 20 18 42 42 H 1.09009 * 109.46798 * 59.99992 * 21 20 18 43 43 H 0.96999 * 120.00317 * 359.97438 * 24 22 21 44 44 H 1.09004 * 110.01276 * 34.29692 * 25 24 22 45 45 H 1.09002 * 110.48500 * 335.78390 * 26 25 24 46 46 H 1.08999 * 110.49106 * 98.42245 * 26 25 24 47 47 H 1.09006 * 110.71881 * 279.57243 * 27 26 25 48 48 H 1.09005 * 110.76758 * 156.22007 * 27 26 25 49 49 H 1.08997 * 110.48650 * 203.40584 * 28 27 26 50 50 H 1.09006 * 110.59510 * 80.81672 * 28 27 26 51 51 H 1.08999 * 110.03077 * 238.57119 * 29 25 24 52 52 H 1.09008 * 110.03046 * 359.94845 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0793 -0.7891 -1.2073 5 7 3.2445 -1.5520 -0.7362 6 6 4.0043 -2.3995 -1.4976 7 1 3.6306 -2.7545 -2.4466 8 6 5.2547 -2.8024 -1.0495 9 7 5.7902 -2.2310 0.0085 10 14 6.1744 -4.1607 -1.9433 11 1 6.9265 -3.5809 -3.0850 12 1 7.1229 -4.8154 -1.0070 13 1 5.2046 -5.1654 -2.4486 14 6 3.4633 -1.2486 0.6897 15 6 2.0789 -0.7933 1.2152 16 1 1.4451 -1.6510 1.4404 17 7 2.2214 0.0730 2.3879 18 6 2.3155 -0.4686 3.6185 19 8 2.2818 -1.6732 3.7550 20 6 2.4615 0.4226 4.8249 21 6 2.5460 -0.4377 6.0873 22 6 2.6926 0.4535 7.2937 23 8 2.7258 1.6582 7.1572 24 7 2.7868 -0.0881 8.5242 25 6 2.9288 0.7782 9.6970 26 6 4.4184 1.0956 9.9423 27 6 4.5545 1.1063 11.4858 28 6 3.6188 -0.0491 11.9203 29 6 2.4204 0.0511 10.9542 30 1 -0.3634 0.4643 0.9168 31 1 -0.3634 0.5618 -0.8605 32 1 -0.3633 -1.0261 -0.0562 33 1 2.3813 -0.1004 -1.9963 34 1 1.3155 -1.4715 -1.5803 35 1 6.6623 -2.5154 0.3240 36 1 3.7960 -2.1405 1.2206 37 1 4.1931 -0.4464 0.7993 38 1 2.2480 1.0365 2.2788 39 1 3.3696 1.0180 4.7291 40 1 1.5985 1.0849 4.8940 41 1 1.6377 -1.0327 6.1829 42 1 3.4088 -1.1002 6.0184 43 1 2.7599 -1.0516 8.6334 44 1 2.3697 1.7021 9.5482 45 1 5.0500 0.3200 9.5091 46 1 4.6736 2.0715 9.5293 47 1 4.2120 2.0561 11.8966 48 1 5.5831 0.9034 11.7845 49 1 3.2914 0.0921 12.9503 50 1 4.1196 -1.0108 11.8085 51 1 1.6152 0.6225 11.4160 52 1 2.0671 -0.9461 10.6915 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209705390.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:07 Heat of formation + Delta-G solvation = -74.553114 kcal Electronic energy + Delta-G solvation = -29147.371044 eV Core-core repulsion = 25146.206060 eV Total energy + Delta-G solvation = -4001.164984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.29191 -39.44623 -38.04980 -37.45580 -33.91631 -33.84883 -32.83529 -32.46598 -30.38824 -29.13444 -28.49368 -27.62930 -25.71792 -25.09113 -23.34840 -21.22295 -20.92587 -20.60545 -20.27089 -20.03620 -19.32067 -17.64873 -16.85746 -16.66717 -16.20646 -15.97460 -15.80497 -15.48113 -14.99465 -14.70122 -14.37465 -13.95625 -13.86535 -13.76255 -13.48175 -13.08115 -12.89345 -12.80237 -12.45794 -12.40124 -12.20727 -12.00564 -11.83787 -11.61996 -11.57764 -11.45341 -11.35158 -11.20944 -11.13720 -11.03411 -10.94171 -10.77017 -10.58687 -10.39995 -9.96709 -9.96030 -9.86284 -9.72905 -9.45214 -9.28934 -8.58310 -8.42021 -6.73338 -5.72046 -3.07865 2.50226 2.90191 3.01460 3.42017 3.47433 3.49742 3.61360 4.12626 4.23017 4.47708 4.52448 4.58179 4.90670 4.99615 5.04701 5.06272 5.08896 5.13453 5.15541 5.24882 5.26487 5.31992 5.38978 5.44870 5.50507 5.55007 5.60445 5.65430 5.76605 5.77931 5.82105 5.84768 5.90551 5.93458 5.96243 6.05720 6.16829 6.23968 6.31054 6.39105 6.49260 6.71282 6.84137 6.99268 7.26981 7.44386 7.64196 7.81400 7.93334 8.05448 8.29384 8.62152 9.20867 9.83428 10.51723 11.40716 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014450 B = 0.002087 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.279497 B =13414.524080 C =14840.329679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 H 0.075 0.925 4 C 0.140 3.860 5 N -0.600 5.600 6 C -0.234 4.234 7 H 0.075 0.925 8 C -0.004 4.004 9 N -0.913 5.913 10 Si 0.911 3.089 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.172 3.828 15 C 0.119 3.881 16 H 0.088 0.912 17 N -0.714 5.714 18 C 0.511 3.489 19 O -0.542 6.542 20 C -0.123 4.123 21 C -0.125 4.125 22 C 0.516 3.484 23 O -0.542 6.542 24 N -0.729 5.729 25 C 0.139 3.861 26 C -0.136 4.136 27 C -0.125 4.125 28 C -0.125 4.125 29 C -0.132 4.132 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.024 0.976 34 H 0.027 0.973 35 H 0.253 0.747 36 H 0.063 0.937 37 H 0.032 0.968 38 H 0.396 0.604 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.401 0.599 44 H 0.090 0.910 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.067 0.933 51 H 0.074 0.926 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.618 7.758 21.587 24.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 H 0.093 0.907 4 C 0.014 3.986 5 N -0.327 5.327 6 C -0.363 4.363 7 H 0.093 0.907 8 C -0.201 4.201 9 N -0.558 5.558 10 Si 0.741 3.259 11 H -0.215 1.215 12 H -0.216 1.216 13 H -0.206 1.206 14 C 0.046 3.954 15 C 0.013 3.987 16 H 0.106 0.894 17 N -0.364 5.364 18 C 0.297 3.703 19 O -0.419 6.419 20 C -0.164 4.164 21 C -0.165 4.165 22 C 0.303 3.697 23 O -0.419 6.419 24 N -0.381 5.381 25 C 0.034 3.966 26 C -0.175 4.175 27 C -0.163 4.163 28 C -0.162 4.162 29 C -0.170 4.170 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.042 0.958 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.050 0.950 38 H 0.230 0.770 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.236 0.764 44 H 0.108 0.892 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.086 0.914 50 H 0.086 0.914 51 H 0.092 0.908 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.429 7.647 21.580 24.398 hybrid contribution 0.674 -0.630 -0.486 1.043 sum -7.754 7.017 21.094 23.545 Atomic orbital electron populations 1.21741 0.94959 1.01836 1.00927 1.22402 0.95174 0.99288 0.96106 0.90698 1.21367 0.90515 0.93029 0.93672 1.44338 1.31654 1.50374 1.06299 1.18948 0.95997 1.19201 1.02125 0.90734 1.24924 0.96388 1.00239 0.98582 1.69960 1.17153 1.42763 1.25958 0.86176 0.79492 0.81706 0.78568 1.21455 1.21590 1.20635 1.21599 0.89766 0.99616 0.84446 1.22610 1.00693 0.92529 0.82824 0.89351 1.45885 1.74158 1.10080 1.06247 1.20502 0.76228 0.89062 0.84483 1.90711 1.49846 1.15148 1.86217 1.21344 1.05434 0.98198 0.91421 1.21377 1.05890 0.98226 0.91031 1.20845 0.75055 0.89210 0.84606 1.90694 1.49701 1.15342 1.86188 1.46231 1.75410 1.10323 1.06143 1.21637 0.96401 0.94282 0.84243 1.22821 0.96089 1.02557 0.96022 1.22497 0.99767 0.98690 0.95319 1.22359 0.95931 0.99092 0.98845 1.22445 0.98535 1.00987 0.95036 0.93092 0.92824 0.92527 0.95781 0.95544 0.93678 0.91867 0.94958 0.77038 0.88226 0.88546 0.88105 0.87828 0.76390 0.89190 0.91026 0.91016 0.91292 0.91305 0.91436 0.91396 0.90771 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.16 37.15 0.34 -1.51 16 2 C -0.11 -1.85 3.16 -88.78 -0.28 -2.13 16 3 H 0.07 1.17 8.00 -51.93 -0.42 0.75 16 4 C 0.14 2.93 6.85 -3.05 -0.02 2.91 16 5 N -0.60 -15.68 3.39 -170.06 -0.58 -16.26 16 6 C -0.23 -6.69 10.21 -15.06 -0.15 -6.84 16 7 H 0.07 2.05 7.85 -52.49 -0.41 1.64 16 8 C 0.00 -0.11 5.38 -17.43 -0.09 -0.20 16 9 N -0.91 -27.59 10.93 55.49 0.61 -26.98 16 10 Si 0.91 22.54 29.56 -169.99 -5.03 17.51 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.17 4.28 5.05 -2.53 -0.01 4.27 16 15 C 0.12 2.27 2.77 -65.78 -0.18 2.09 16 16 H 0.09 1.84 7.63 -51.93 -0.40 1.45 16 17 N -0.71 -11.20 5.23 -51.73 -0.27 -11.47 16 18 C 0.51 8.20 7.83 -10.98 -0.09 8.12 16 19 O -0.54 -10.83 15.73 5.56 0.09 -10.75 16 20 C -0.12 -1.50 4.99 -27.88 -0.14 -1.64 16 21 C -0.12 -1.37 4.99 -27.88 -0.14 -1.51 16 22 C 0.52 5.72 7.82 -10.99 -0.09 5.64 16 23 O -0.54 -7.78 15.65 5.55 0.09 -7.69 16 24 N -0.73 -6.05 5.04 -52.72 -0.27 -6.32 16 25 C 0.14 1.10 3.23 -66.81 -0.22 0.88 16 26 C -0.14 -1.07 6.54 -25.04 -0.16 -1.24 16 27 C -0.12 -0.75 6.91 -24.70 -0.17 -0.92 16 28 C -0.12 -0.65 6.83 -25.07 -0.17 -0.82 16 29 C -0.13 -0.74 6.57 -25.62 -0.17 -0.91 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.03 0.54 7.77 -51.93 -0.40 0.14 16 35 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.06 1.83 7.33 -51.93 -0.38 1.45 16 37 H 0.03 0.87 7.94 -51.93 -0.41 0.46 16 38 H 0.40 5.01 8.52 -40.82 -0.35 4.66 16 39 H 0.10 1.21 8.10 -51.93 -0.42 0.79 16 40 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 41 H 0.10 1.02 8.10 -51.93 -0.42 0.60 16 42 H 0.10 1.17 8.10 -51.92 -0.42 0.75 16 43 H 0.40 2.43 8.31 -40.82 -0.34 2.09 16 44 H 0.09 0.86 7.59 -51.93 -0.39 0.46 16 45 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 52 H 0.07 0.36 7.61 -51.92 -0.40 -0.04 16 LS Contribution 413.79 15.07 6.24 6.24 Total: -1.00 -35.27 413.79 -10.22 -45.49 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -9.36 Total: 4.05 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -1.74 Total: 6.19 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -0.51 Total: -61.03 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.17 Total: -18.44 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.27 -10.22 -45.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209705390.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.065 kcal (2) G-P(sol) polarization free energy of solvation -35.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds