Wall clock time and date at job start Tue Mar 31 2020 20:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.38546 * 2 1 4 4 C 1.54385 * 110.34014 * 237.77339 * 2 1 3 5 5 N 1.48157 * 104.61513 * 264.99440 * 4 2 1 6 6 C 1.34774 * 127.83500 * 140.39484 * 5 4 2 7 7 O 1.21275 * 120.00285 * 354.95474 * 6 5 4 8 8 C 1.50699 * 119.99566 * 174.95971 * 6 5 4 9 9 C 1.53002 * 109.47022 * 267.75720 * 8 6 5 10 10 C 1.52999 * 109.47175 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47127 * 60.00281 * 10 9 8 12 12 C 1.52995 * 109.47128 * 299.99873 * 11 10 9 13 13 C 1.52997 * 109.47166 * 147.76070 * 8 6 5 14 14 C 1.48142 * 104.32085 * 320.41825 * 5 4 2 15 15 C 1.54285 * 110.34138 * 122.23539 * 2 1 3 16 16 H 1.09002 * 110.34577 * 359.89043 * 15 2 1 17 17 N 1.46901 * 110.33957 * 237.74029 * 15 2 1 18 18 C 1.46904 * 111.00350 * 155.00125 * 17 15 2 19 19 C 1.50689 * 109.47435 * 179.97438 * 18 17 15 20 20 O 1.21293 * 120.00394 * 359.97438 * 19 18 17 21 21 N 1.34775 * 120.00116 * 179.72754 * 19 18 17 22 22 C 1.37101 * 120.00296 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99795 * 359.97438 * 22 21 19 24 24 C 1.38948 * 119.99884 * 179.97438 * 22 21 19 25 25 N 1.31412 * 120.00026 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99849 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47106 * 90.00269 * 26 24 22 28 28 H 1.48502 * 109.47424 * 210.00403 * 26 24 22 29 29 H 1.48506 * 109.47186 * 330.00401 * 26 24 22 30 30 H 1.09008 * 109.46937 * 297.76689 * 1 2 3 31 31 H 1.08999 * 109.46965 * 57.76537 * 1 2 3 32 32 H 1.08995 * 109.47351 * 177.76787 * 1 2 3 33 33 H 1.09003 * 110.40907 * 23.77411 * 4 2 1 34 34 H 1.09000 * 110.41070 * 146.09726 * 4 2 1 35 35 H 1.08994 * 109.47643 * 27.75756 * 8 6 5 36 36 H 1.08999 * 109.47242 * 300.00099 * 9 8 6 37 37 H 1.08996 * 109.47076 * 59.99981 * 9 8 6 38 38 H 1.08999 * 109.47079 * 300.00153 * 10 9 8 39 39 H 1.08996 * 109.47237 * 180.02562 * 10 9 8 40 40 H 1.09006 * 109.47177 * 179.97438 * 11 10 9 41 41 H 1.08999 * 109.47245 * 59.99974 * 11 10 9 42 42 H 1.08999 * 109.47140 * 300.00165 * 12 11 10 43 43 H 1.09005 * 109.47570 * 180.02562 * 12 11 10 44 44 H 1.09003 * 109.47341 * 299.99854 * 13 8 6 45 45 H 1.08999 * 109.47245 * 59.99810 * 13 8 6 46 46 H 1.09008 * 110.40442 * 280.79509 * 14 5 4 47 47 H 1.09004 * 110.40801 * 158.37720 * 14 5 4 48 48 H 1.00895 * 111.00138 * 31.04675 * 17 15 2 49 49 H 1.09005 * 109.46634 * 59.99319 * 18 17 15 50 50 H 1.09001 * 109.46578 * 300.00673 * 18 17 15 51 51 H 0.97004 * 119.99978 * 359.97438 * 21 19 18 52 52 H 0.97008 * 119.99650 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0667 -0.7720 -1.2246 5 7 2.3139 -2.1438 -0.7227 6 6 2.0770 -3.3105 -1.3546 7 8 1.5214 -3.3143 -2.4326 8 6 2.5023 -4.6101 -0.7214 9 6 3.9039 -4.9810 -1.2104 10 6 4.3355 -6.3008 -0.5681 11 6 3.3505 -7.4044 -0.9589 12 6 1.9490 -7.0336 -0.4700 13 6 1.5174 -5.7140 -1.1117 14 6 2.8801 -1.9422 0.6313 15 6 2.0664 -0.7716 1.2237 16 1 1.2398 -1.1490 1.8258 17 7 2.9332 0.0946 2.0337 18 6 2.9733 -0.3588 3.4305 19 6 3.8706 0.5514 4.2286 20 8 4.4230 1.4858 3.6872 21 7 4.0556 0.3303 5.5452 22 6 4.8724 1.1582 6.2712 23 1 5.3680 1.9872 5.7881 24 6 5.0626 0.9305 7.6287 25 7 4.4600 -0.0786 8.2164 26 14 6.1761 2.0580 8.6178 27 1 5.3776 3.1810 9.1714 28 1 6.7924 1.2928 9.7312 29 1 7.2435 2.5967 7.7370 30 1 -0.3633 0.4788 0.9094 31 1 -0.3633 0.5481 -0.8693 32 1 -0.3634 -1.0268 -0.0400 33 1 1.3222 -0.7869 -2.0206 34 1 2.9938 -0.3228 -1.5806 35 1 2.5133 -4.4997 0.3629 36 1 3.8930 -5.0915 -2.2947 37 1 4.6056 -4.1946 -0.9324 38 1 4.3463 -6.1908 0.5163 39 1 5.3341 -6.5648 -0.9161 40 1 3.6582 -8.3448 -0.5017 41 1 3.3397 -7.5145 -2.0433 42 1 1.9598 -6.9235 0.6144 43 1 1.2472 -7.8200 -0.7480 44 1 0.5189 -5.4498 -0.7634 45 1 1.5065 -5.8245 -2.1960 46 1 3.9355 -1.6771 0.5663 47 1 2.7496 -2.8401 1.2355 48 1 2.6388 1.0578 1.9746 49 1 3.3605 -1.3770 3.4709 50 1 1.9670 -0.3360 3.8488 51 1 3.6108 -0.4145 5.9791 52 1 4.5931 -0.2377 9.1641 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214066513.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:55 Heat of formation + Delta-G solvation = -92.087623 kcal Electronic energy + Delta-G solvation = -29819.401013 eV Core-core repulsion = 25817.475676 eV Total energy + Delta-G solvation = -4001.925337 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.61599 -38.99877 -38.12771 -37.34131 -34.66584 -33.81215 -32.77874 -31.27019 -31.18294 -31.04539 -28.85197 -26.92808 -26.34985 -24.36927 -23.53423 -22.87168 -22.11260 -20.44746 -20.17939 -19.23811 -19.13461 -17.91143 -17.32016 -16.40541 -16.19782 -15.73895 -15.37739 -15.12815 -14.72316 -14.59641 -14.38611 -14.29635 -14.09288 -13.88347 -13.76985 -13.55820 -13.27296 -13.12250 -12.78002 -12.56783 -12.48147 -12.27433 -12.26787 -12.03252 -11.64767 -11.57181 -11.54365 -11.40139 -11.15453 -11.10431 -11.03212 -10.94481 -10.85283 -10.64069 -10.42125 -10.40694 -10.25161 -9.75012 -9.54649 -8.87489 -8.51431 -8.17783 -8.00257 -6.45423 -3.86331 2.49287 2.77559 3.15218 3.24371 3.30136 3.85989 4.00067 4.13896 4.26586 4.37367 4.41001 4.46084 4.51100 4.77297 4.84614 4.86664 4.95393 5.02545 5.07881 5.14345 5.16007 5.20192 5.23108 5.29056 5.30773 5.33102 5.45054 5.53471 5.57059 5.63994 5.69179 5.73361 5.75223 5.75867 5.80710 5.81578 5.85328 5.89391 5.92138 5.93247 5.97671 6.00094 6.11780 6.17042 6.25066 7.12691 7.42270 7.51814 7.54056 8.02286 8.03698 8.56901 9.14141 9.50041 10.01112 10.72211 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012431 B = 0.002404 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.921468 B =11644.258641 C =13209.848614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 H 0.096 0.904 4 C 0.112 3.888 5 N -0.621 5.621 6 C 0.540 3.460 7 O -0.546 6.546 8 C -0.102 4.102 9 C -0.106 4.106 10 C -0.118 4.118 11 C -0.121 4.121 12 C -0.119 4.119 13 C -0.102 4.102 14 C 0.108 3.892 15 C 0.076 3.924 16 H 0.059 0.941 17 N -0.658 5.658 18 C 0.049 3.951 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.283 1.283 29 H -0.269 1.269 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.076 0.924 48 H 0.354 0.646 49 H 0.085 0.915 50 H 0.045 0.955 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.004 -12.184 -16.158 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 H 0.114 0.886 4 C -0.011 4.011 5 N -0.355 5.355 6 C 0.329 3.671 7 O -0.424 6.424 8 C -0.123 4.123 9 C -0.144 4.144 10 C -0.155 4.155 11 C -0.159 4.159 12 C -0.157 4.157 13 C -0.140 4.140 14 C -0.016 4.016 15 C -0.035 4.035 16 H 0.076 0.924 17 N -0.292 5.292 18 C -0.084 4.084 19 C 0.226 3.774 20 O -0.467 6.467 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.108 0.892 47 H 0.095 0.905 48 H 0.176 0.824 49 H 0.104 0.896 50 H 0.063 0.937 51 H 0.225 0.775 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.358 -12.041 -17.120 21.875 hybrid contribution -0.571 0.402 1.393 1.558 sum -6.929 -11.639 -15.727 20.756 Atomic orbital electron populations 1.21845 0.94150 1.01989 1.02032 1.22322 0.96219 1.00160 0.94223 0.88592 1.22350 1.01047 0.81132 0.96583 1.49015 1.63080 1.05539 1.17856 1.20325 0.77931 0.83950 0.84869 1.90677 1.42752 1.86909 1.22013 1.21322 0.97479 0.92129 1.01388 1.21442 0.93902 0.97938 1.01110 1.21525 0.98839 0.94243 1.00918 1.21560 0.94935 0.98180 1.01211 1.21538 0.96754 0.96845 1.00527 1.21390 0.97510 0.93173 1.01908 1.22571 0.99003 0.97997 0.82027 1.22497 0.93413 0.93709 0.93887 0.92351 1.60127 1.53858 1.06478 1.08775 1.21755 0.98465 0.99716 0.88425 1.19766 0.86697 0.87981 0.83001 1.90530 1.52800 1.33125 1.70269 1.41868 1.42662 1.28619 1.06802 1.19700 1.22822 1.09696 0.90696 0.87907 1.25262 0.98260 0.97346 0.97034 1.69612 1.43462 1.29029 1.12172 0.85862 0.79966 0.79468 0.79031 1.20414 1.20903 1.19378 0.92309 0.92226 0.92626 0.90002 0.90741 0.89186 0.91265 0.91362 0.91556 0.91531 0.91905 0.91912 0.91801 0.91676 0.91845 0.90728 0.89205 0.90519 0.82441 0.89630 0.93698 0.77470 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.90 37.16 0.33 -0.97 16 2 C -0.11 -1.10 3.33 -89.22 -0.30 -1.39 16 3 H 0.10 0.95 7.52 -51.93 -0.39 0.56 16 4 C 0.11 1.19 6.61 -2.40 -0.02 1.18 16 5 N -0.62 -6.99 3.32 -169.30 -0.56 -7.55 16 6 C 0.54 6.61 6.94 -10.99 -0.08 6.54 16 7 O -0.55 -8.47 16.47 5.56 0.09 -8.38 16 8 C -0.10 -0.97 2.25 -91.77 -0.21 -1.17 16 9 C -0.11 -0.92 5.19 -26.73 -0.14 -1.06 16 10 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 11 C -0.12 -0.84 5.92 -26.74 -0.16 -1.00 16 12 C -0.12 -0.86 5.92 -26.76 -0.16 -1.02 16 13 C -0.10 -0.92 4.82 -26.76 -0.13 -1.05 16 14 C 0.11 1.15 6.58 -2.42 -0.02 1.14 16 15 C 0.08 0.85 3.05 -66.32 -0.20 0.65 16 16 H 0.06 0.64 7.39 -51.93 -0.38 0.26 16 17 N -0.66 -9.48 5.92 -106.51 -0.63 -10.11 16 18 C 0.05 0.79 6.02 -4.98 -0.03 0.76 16 19 C 0.44 9.90 7.82 -10.99 -0.09 9.82 16 20 O -0.58 -15.24 15.78 5.55 0.09 -15.15 16 21 N -0.56 -13.79 5.29 -10.97 -0.06 -13.85 16 22 C -0.30 -8.17 9.68 -14.93 -0.14 -8.31 16 23 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.03 13.05 55.50 0.72 -23.31 16 26 Si 0.93 20.68 29.55 -169.99 -5.02 15.66 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 29 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 30 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.91 7.57 -51.93 -0.39 0.52 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.78 6.39 -51.93 -0.33 0.45 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.76 7.85 -51.93 -0.41 0.35 16 46 H 0.09 1.06 8.06 -51.92 -0.42 0.64 16 47 H 0.08 0.72 6.51 -51.93 -0.34 0.38 16 48 H 0.35 5.32 7.75 -39.29 -0.30 5.01 16 49 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 50 H 0.05 0.66 8.07 -51.93 -0.42 0.24 16 51 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 52 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 409.61 15.07 6.17 6.17 Total: -1.00 -31.60 409.61 -9.92 -41.51 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -9.14 Total: 11.43 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -1.58 Total: 3.57 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.53 Total: -54.83 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: 0.18 Total: -23.52 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.60 -9.92 -41.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214066513.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.575 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds