Wall clock time and date at job start Tue Mar 31 2020 20:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.37141 * 2 1 4 4 C 1.53996 * 110.32874 * 237.80553 * 2 1 3 5 5 N 1.47482 * 107.08748 * 242.41623 * 4 2 1 6 6 C 1.34778 * 127.03771 * 154.51642 * 5 4 2 7 7 O 1.21278 * 120.00021 * 180.02562 * 6 5 4 8 8 C 1.50699 * 119.99778 * 0.02651 * 6 5 4 9 9 C 1.53000 * 109.47415 * 180.02562 * 8 6 5 10 10 C 1.53869 * 110.03576 * 184.99800 * 9 8 6 11 11 C 1.54270 * 106.63967 * 240.64009 * 10 9 8 12 12 C 1.54961 * 104.16191 * 336.44607 * 11 10 9 13 13 C 1.54268 * 110.07209 * 67.80237 * 9 8 6 14 14 C 1.48118 * 105.93004 * 334.77878 * 5 4 2 15 15 C 1.54600 * 103.42250 * 39.02480 * 14 5 4 16 16 H 1.08995 * 110.57864 * 81.16889 * 15 14 5 17 17 N 1.46907 * 110.98704 * 204.37603 * 15 14 5 18 18 C 1.46899 * 110.99450 * 268.65026 * 17 15 14 19 19 C 1.50704 * 109.46695 * 179.97438 * 18 17 15 20 20 O 1.21297 * 120.00073 * 0.02562 * 19 18 17 21 21 N 1.34778 * 119.99844 * 179.97438 * 19 18 17 22 22 C 1.37102 * 119.99763 * 180.02562 * 21 19 18 23 23 H 1.07996 * 119.99868 * 359.97438 * 22 21 19 24 24 C 1.38946 * 119.99672 * 180.02562 * 22 21 19 25 25 N 1.31415 * 120.00414 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99905 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46977 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47027 * 119.99677 * 26 24 22 29 29 H 1.48491 * 109.47288 * 239.99975 * 26 24 22 30 30 H 1.08995 * 109.47226 * 180.73668 * 1 2 3 31 31 H 1.08998 * 109.47182 * 300.74195 * 1 2 3 32 32 H 1.09006 * 109.46649 * 60.73532 * 1 2 3 33 33 H 1.09006 * 109.91624 * 123.05246 * 4 2 1 34 34 H 1.09005 * 110.07401 * 1.86851 * 4 2 1 35 35 H 1.08999 * 109.47531 * 59.99458 * 8 6 5 36 36 H 1.09011 * 109.46981 * 299.99731 * 8 6 5 37 37 H 1.08999 * 110.01223 * 306.39062 * 9 8 6 38 38 H 1.09002 * 110.03268 * 359.95096 * 10 9 8 39 39 H 1.08995 * 110.03391 * 121.33402 * 10 9 8 40 40 H 1.08997 * 110.48585 * 95.09409 * 11 10 9 41 41 H 1.09002 * 110.48442 * 217.73292 * 11 10 9 42 42 H 1.09001 * 110.71970 * 279.57802 * 12 11 10 43 43 H 1.08998 * 110.76825 * 156.22170 * 12 11 10 44 44 H 1.08997 * 110.48788 * 261.59881 * 13 9 8 45 45 H 1.09000 * 110.48806 * 24.11180 * 13 9 8 46 46 H 1.09002 * 110.66408 * 157.50774 * 14 5 4 47 47 H 1.09003 * 110.65881 * 280.62449 * 14 5 4 48 48 H 1.00890 * 110.99618 * 144.69723 * 17 15 14 49 49 H 1.09000 * 109.47138 * 299.99953 * 18 17 15 50 50 H 1.08994 * 109.47475 * 60.00268 * 18 17 15 51 51 H 0.97001 * 119.99858 * 0.02562 * 21 19 18 52 52 H 0.96992 * 119.99837 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9095 1.0218 0.0000 4 6 2.0650 -0.7694 -1.2220 5 7 2.8277 -1.9224 -0.7083 6 6 3.0614 -3.0887 -1.3421 7 8 3.7091 -3.9565 -0.7961 8 6 2.5178 -3.3143 -2.7294 9 6 2.9224 -4.7074 -3.2155 10 6 2.4818 -4.9046 -4.6765 11 6 1.5052 -6.0989 -4.6861 12 6 1.8764 -6.9023 -3.4141 13 6 2.1979 -5.7884 -2.3869 14 6 3.2788 -1.5391 0.6494 15 6 2.0670 -0.7723 1.2271 16 1 1.3174 -1.4682 1.6035 17 7 2.4878 0.1576 2.2837 18 6 2.4315 -0.4850 3.6035 19 6 2.8697 0.4971 4.6593 20 8 3.1963 1.6217 4.3435 21 7 2.8976 0.1259 5.9547 22 6 3.2958 1.0195 6.9153 23 1 3.5874 2.0205 6.6339 24 6 3.3251 0.6367 8.2507 25 7 2.9708 -0.5816 8.5930 26 14 3.8683 1.8539 9.5595 27 1 4.2125 3.1487 8.9189 28 1 2.7647 2.0610 10.5314 29 1 5.0587 1.3200 10.2686 30 1 -0.3633 -1.0275 0.0132 31 1 -0.3633 0.5253 0.8832 32 1 -0.3633 0.5024 -0.8966 33 1 2.7182 -0.1245 -1.8100 34 1 1.2355 -1.1175 -1.8375 35 1 2.9230 -2.5613 -3.4054 36 1 1.4305 -3.2381 -2.7105 37 1 4.0018 -4.8331 -3.1308 38 1 1.9789 -4.0081 -5.0391 39 1 3.3474 -5.1252 -5.3010 40 1 0.4745 -5.7492 -4.6289 41 1 1.6541 -6.7062 -5.5789 42 1 2.7519 -7.5262 -3.5939 43 1 1.0331 -7.5057 -3.0783 44 1 2.8517 -6.1698 -1.6026 45 1 1.2804 -5.3877 -1.9561 46 1 3.4935 -2.4245 1.2478 47 1 4.1523 -0.8892 0.5952 48 1 1.9316 0.9992 2.2672 49 1 1.4103 -0.8069 3.8075 50 1 3.0943 -1.3501 3.6150 51 1 2.6361 -0.7733 6.2073 52 1 2.9909 -0.8486 9.5253 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214070156.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:15 Heat of formation + Delta-G solvation = -89.340616 kcal Electronic energy + Delta-G solvation = -29210.053351 eV Core-core repulsion = 25208.247133 eV Total energy + Delta-G solvation = -4001.806218 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.46578 -38.97789 -38.15093 -37.48246 -34.74387 -33.80516 -32.55359 -31.88260 -31.21507 -29.11163 -28.93287 -26.92780 -26.54376 -25.44201 -24.07823 -22.17045 -20.99761 -20.50954 -20.04787 -19.42753 -19.07100 -17.88062 -17.31687 -16.68510 -16.09478 -15.78857 -15.64470 -15.27514 -14.91840 -14.79578 -14.55702 -14.20662 -13.84150 -13.78838 -13.62160 -13.55026 -13.35055 -13.12488 -13.06314 -12.48716 -12.38137 -12.18199 -12.01071 -11.61575 -11.52974 -11.51497 -11.38086 -11.26970 -11.23170 -11.16183 -11.05167 -11.02673 -10.88786 -10.71785 -10.69076 -10.34458 -10.22724 -9.87111 -9.52471 -8.85077 -8.47840 -8.14022 -7.96745 -6.41957 -3.82940 2.52308 2.77088 3.16337 3.26997 3.34159 3.89566 4.04088 4.12552 4.24107 4.29896 4.32553 4.39860 4.46622 4.64647 4.71532 4.88071 4.96628 5.04356 5.15286 5.17231 5.18687 5.21708 5.24451 5.27353 5.30846 5.34119 5.37875 5.47692 5.52566 5.54987 5.60535 5.63110 5.72397 5.73252 5.79462 5.81641 5.84660 5.89927 5.95826 5.99157 6.01289 6.06885 6.13981 6.21062 6.28495 7.16068 7.40615 7.55223 7.58691 8.05102 8.05933 8.60424 9.17424 9.53743 10.04704 10.75785 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020855 B = 0.001887 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.263655 B =14833.422450 C =15599.945413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 H 0.098 0.902 4 C 0.109 3.891 5 N -0.624 5.624 6 C 0.530 3.470 7 O -0.537 6.537 8 C -0.129 4.129 9 C -0.078 4.078 10 C -0.122 4.122 11 C -0.125 4.125 12 C -0.128 4.128 13 C -0.114 4.114 14 C 0.113 3.887 15 C 0.077 3.923 16 H 0.059 0.941 17 N -0.656 5.656 18 C 0.050 3.950 19 C 0.441 3.559 20 O -0.584 6.584 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.281 1.281 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.354 0.646 49 H 0.045 0.955 50 H 0.086 0.914 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.887 -8.243 -26.581 28.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 H 0.116 0.884 4 C -0.015 4.015 5 N -0.359 5.359 6 C 0.319 3.681 7 O -0.413 6.413 8 C -0.169 4.169 9 C -0.097 4.097 10 C -0.159 4.159 11 C -0.162 4.162 12 C -0.165 4.165 13 C -0.151 4.151 14 C -0.010 4.010 15 C -0.034 4.034 16 H 0.077 0.923 17 N -0.290 5.290 18 C -0.083 4.083 19 C 0.226 3.774 20 O -0.468 6.468 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.122 0.878 24 C -0.180 4.180 25 N -0.542 5.542 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.100 0.900 47 H 0.102 0.898 48 H 0.175 0.825 49 H 0.063 0.937 50 H 0.105 0.895 51 H 0.226 0.774 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.632 -8.242 -26.442 28.264 hybrid contribution -0.898 0.072 1.117 1.435 sum -6.530 -8.170 -25.325 27.400 Atomic orbital electron populations 1.21884 0.93964 1.02048 1.02396 1.22298 0.96288 1.00573 0.93853 0.88368 1.22160 0.95488 0.87406 0.96431 1.48817 1.54118 1.14935 1.18011 1.20364 0.80040 0.79965 0.87745 1.90712 1.40302 1.42401 1.67899 1.21835 1.02274 0.99270 0.93491 1.21556 1.01243 0.92734 0.94123 1.22232 0.99203 0.98494 0.95994 1.22371 0.99147 0.96677 0.98046 1.22543 1.01022 0.97608 0.95343 1.22391 0.99971 0.95119 0.97667 1.22437 0.97276 0.99352 0.81900 1.22600 0.95204 0.94206 0.91427 0.92345 1.60007 1.60242 1.06934 1.01780 1.21755 0.99999 0.97581 0.88978 1.19767 0.85204 0.89005 0.83383 1.90523 1.53550 1.21493 1.81219 1.41875 1.58479 1.14829 1.04789 1.19756 1.41065 0.96136 0.85920 0.87830 1.25276 0.97491 0.96915 0.98312 1.69621 1.48175 1.17633 1.18800 0.85794 0.78134 0.80273 0.80103 1.19208 1.20784 1.20729 0.92535 0.92005 0.92102 0.91203 0.90747 0.89099 0.89047 0.90170 0.91715 0.91696 0.91770 0.91879 0.91570 0.91763 0.90744 0.92141 0.90026 0.89754 0.82527 0.93710 0.89540 0.77443 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.90 37.16 0.33 -0.77 16 2 C -0.11 -0.99 3.08 -89.25 -0.28 -1.27 16 3 H 0.10 0.91 7.94 -51.93 -0.41 0.49 16 4 C 0.11 0.87 6.42 -2.99 -0.02 0.85 16 5 N -0.62 -6.84 3.29 -169.98 -0.56 -7.40 16 6 C 0.53 6.21 7.68 -10.99 -0.08 6.13 16 7 O -0.54 -8.34 15.04 5.56 0.08 -8.26 16 8 C -0.13 -1.01 3.91 -27.88 -0.11 -1.12 16 9 C -0.08 -0.65 2.54 -89.50 -0.23 -0.87 16 10 C -0.12 -0.77 6.45 -25.61 -0.17 -0.93 16 11 C -0.12 -0.77 6.84 -25.03 -0.17 -0.95 16 12 C -0.13 -0.93 6.91 -24.70 -0.17 -1.10 16 13 C -0.11 -1.04 5.43 -25.07 -0.14 -1.17 16 14 C 0.11 1.46 6.76 -2.31 -0.02 1.44 16 15 C 0.08 0.92 2.92 -66.02 -0.19 0.73 16 16 H 0.06 0.71 7.54 -51.93 -0.39 0.32 16 17 N -0.66 -10.03 5.98 -106.20 -0.64 -10.66 16 18 C 0.05 0.86 6.03 -4.97 -0.03 0.83 16 19 C 0.44 10.33 7.82 -10.98 -0.09 10.24 16 20 O -0.58 -15.65 15.78 5.54 0.09 -15.56 16 21 N -0.56 -14.30 5.29 -10.96 -0.06 -14.35 16 22 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 23 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 26 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 30 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.45 7.08 -51.93 -0.37 0.08 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.59 7.78 -51.92 -0.40 0.18 16 37 H 0.08 0.80 7.92 -51.93 -0.41 0.38 16 38 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.83 7.66 -51.93 -0.40 0.43 16 45 H 0.06 0.55 7.76 -51.93 -0.40 0.15 16 46 H 0.08 1.18 7.85 -51.93 -0.41 0.77 16 47 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 48 H 0.35 5.46 8.03 -39.30 -0.32 5.14 16 49 H 0.04 0.70 8.08 -51.93 -0.42 0.29 16 50 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 51 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 52 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 412.55 15.07 6.22 6.22 Total: -1.00 -32.63 412.55 -9.99 -42.62 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -9.23 Total: 11.23 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -1.59 Total: 4.01 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: -0.53 Total: -56.34 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: 0.17 Total: -23.82 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.63 -9.99 -42.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214070156.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.720 kcal (2) G-P(sol) polarization free energy of solvation -32.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds