Wall clock time and date at job start Tue Mar 31 2020 20:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47228 * 2 1 4 4 C 1.52992 * 109.47061 * 120.00403 * 2 1 3 5 5 C 1.53003 * 109.47383 * 67.54713 * 4 2 1 6 6 C 1.50693 * 110.43525 * 297.53221 * 5 4 2 7 7 O 1.21280 * 120.00263 * 117.97014 * 6 5 4 8 8 N 1.34770 * 120.00111 * 297.68951 * 6 5 4 9 9 C 1.47425 * 125.65219 * 175.57872 * 8 6 5 10 10 C 1.54910 * 104.83692 * 204.09605 * 9 8 6 11 11 H 1.08996 * 111.00791 * 81.06338 * 10 9 8 12 12 C 1.53001 * 111.00633 * 204.87963 * 10 9 8 13 13 C 1.55166 * 101.57811 * 322.99202 * 10 9 8 14 14 H 1.09003 * 110.72062 * 276.95827 * 13 10 9 15 15 N 1.46501 * 110.71825 * 153.86599 * 13 10 9 16 16 C 1.36930 * 120.00136 * 154.99982 * 15 13 10 17 17 H 1.08008 * 119.99846 * 359.97438 * 16 15 13 18 18 C 1.38815 * 120.00466 * 179.97438 * 16 15 13 19 19 N 1.31615 * 119.99610 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00379 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46991 * 60.00419 * 20 18 16 22 22 H 1.48500 * 109.47336 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47588 * 300.00594 * 20 18 16 24 24 C 1.47031 * 125.64783 * 355.27661 * 8 6 5 25 25 C 1.54629 * 110.48765 * 174.98699 * 5 4 2 26 26 C 1.54476 * 101.76442 * 216.39336 * 25 5 4 27 27 N 1.46770 * 105.47417 * 25.41571 * 26 25 5 28 28 C 1.34413 * 111.29904 * 342.98603 * 27 26 25 29 29 O 1.21284 * 124.94080 * 180.40522 * 28 27 26 30 30 H 1.08995 * 109.47404 * 168.19980 * 1 2 3 31 31 H 1.09009 * 109.46689 * 288.19813 * 1 2 3 32 32 H 1.08996 * 109.46694 * 48.19447 * 1 2 3 33 33 H 1.08997 * 109.46523 * 240.00276 * 2 1 3 34 34 H 1.08996 * 109.46813 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47423 * 300.00565 * 3 2 1 36 36 H 1.09003 * 109.46930 * 60.00279 * 3 2 1 37 37 H 1.09003 * 109.47483 * 307.55073 * 4 2 1 38 38 H 1.09004 * 109.47547 * 187.54829 * 4 2 1 39 39 H 1.09004 * 110.36946 * 322.93447 * 9 8 6 40 40 H 1.09005 * 110.36783 * 85.25673 * 9 8 6 41 41 H 1.09003 * 109.46776 * 58.54633 * 12 10 9 42 42 H 1.08999 * 109.46770 * 178.54300 * 12 10 9 43 43 H 1.08993 * 109.47165 * 298.54516 * 12 10 9 44 44 H 0.97003 * 119.99782 * 334.99589 * 15 13 10 45 45 H 0.97003 * 120.00093 * 180.02562 * 19 18 16 46 46 H 1.08994 * 109.88048 * 298.39375 * 24 8 6 47 47 H 1.08999 * 109.88065 * 59.55890 * 24 8 6 48 48 H 1.08996 * 110.96831 * 334.51159 * 25 5 4 49 49 H 1.08996 * 110.96901 * 98.27309 * 25 5 4 50 50 H 1.09004 * 110.24648 * 144.41835 * 26 25 5 51 51 H 1.09003 * 110.24893 * 266.33202 * 26 25 5 52 52 H 0.97003 * 124.34986 * 162.98009 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6906 -2.2081 1.1580 6 6 0.1959 -2.3960 1.1208 7 8 -0.3272 -2.9066 0.1531 8 7 -0.5590 -2.0018 2.1653 9 6 -2.0315 -2.0407 2.2244 10 6 -2.4149 -0.9676 3.2738 11 1 -2.4061 0.0297 2.8341 12 6 -3.7762 -1.2753 3.9007 13 6 -1.2741 -1.1272 4.3134 14 1 -1.4921 -1.9426 5.0031 15 7 -1.0602 0.1243 5.0444 16 6 -0.5090 0.0996 6.2975 17 1 -0.2321 -0.8426 6.7473 18 6 -0.3058 1.2854 6.9900 19 7 -0.6436 2.4335 6.4422 20 14 0.4455 1.2517 8.6999 21 1 1.7965 0.6384 8.6348 22 1 0.5555 2.6384 9.2197 23 1 -0.4183 0.4514 9.6046 24 6 -0.0501 -1.4675 3.4370 25 6 2.3040 -2.9822 2.3478 26 6 2.6966 -4.3206 1.6840 27 7 2.8928 -4.0103 0.2630 28 6 2.3332 -2.8320 -0.0613 29 8 2.3421 -2.3405 -1.1700 30 1 -0.3634 -1.0059 -0.2101 31 1 -0.3633 0.3210 0.9764 32 1 -0.3632 0.6850 -0.7660 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6768 1.9563 0.8900 37 1 1.5707 -0.2915 2.1341 38 1 3.1217 -0.6059 1.3193 39 1 -2.4570 -1.7899 1.2526 40 1 -2.3725 -3.0248 2.5461 41 1 -3.7460 -2.2586 4.3703 42 1 -4.0090 -0.5208 4.6521 43 1 -4.5433 -1.2659 3.1265 44 1 -1.3091 0.9704 4.6405 45 1 -0.5013 3.2622 6.9259 46 1 0.5669 -2.2165 3.9333 47 1 0.5339 -0.5658 3.2530 48 1 3.1824 -2.4673 2.7368 49 1 1.5653 -3.1384 3.1338 50 1 3.6214 -4.7002 2.1184 51 1 1.8962 -5.0507 1.8048 52 1 3.3658 -4.5820 -0.3619 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214897337.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:52 Heat of formation + Delta-G solvation = -67.575311 kcal Electronic energy + Delta-G solvation = -32544.307183 eV Core-core repulsion = 28543.444780 eV Total energy + Delta-G solvation = -4000.862403 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.75186 -40.48897 -38.81224 -37.51514 -37.18473 -35.79121 -34.08638 -32.89572 -32.26879 -29.55811 -29.12796 -28.11575 -27.51523 -26.33608 -25.77014 -23.81587 -22.82534 -22.08625 -21.33223 -21.00686 -19.94769 -19.02295 -18.47847 -18.11169 -17.41460 -17.14086 -16.58633 -16.13777 -15.97399 -15.80698 -15.32035 -15.16879 -15.09517 -14.86081 -14.64448 -14.58117 -14.21486 -14.05548 -13.88513 -13.58953 -13.56634 -13.40247 -13.17871 -13.02227 -12.89176 -12.81115 -12.74371 -12.67648 -12.31312 -12.20207 -12.05313 -11.97422 -11.85538 -11.74875 -11.57125 -11.37424 -11.29800 -10.95615 -10.78885 -10.45809 -10.08739 -9.60956 -8.97426 -7.86611 -5.15617 1.31355 1.47756 1.56009 1.56855 1.62616 2.02080 2.39370 2.63365 3.06641 3.32476 3.39800 3.45865 3.60357 3.82921 3.86601 3.92602 3.94292 4.01183 4.12212 4.21364 4.27109 4.36336 4.43647 4.48487 4.60144 4.67945 4.68746 4.70306 4.74063 4.76570 4.82633 4.85283 4.94433 4.96588 4.99068 5.03582 5.06511 5.16553 5.21864 5.24361 5.29721 5.36390 5.39082 5.50965 5.55997 5.63838 5.78602 6.00781 6.32916 6.46568 7.02902 7.20969 7.41732 8.13827 8.37272 9.36042 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011930 B = 0.004003 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.374055 B = 6993.349320 C = 7337.327459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.117 4.117 3 C -0.138 4.138 4 C -0.097 4.097 5 C -0.112 4.112 6 C 0.566 3.434 7 O -0.580 6.580 8 N -0.601 5.601 9 C 0.117 3.883 10 C -0.105 4.105 11 H 0.066 0.934 12 C -0.127 4.127 13 C 0.172 3.828 14 H 0.076 0.924 15 N -0.719 5.719 16 C -0.235 4.235 17 H 0.084 0.916 18 C -0.067 4.067 19 N -0.968 5.968 20 Si 0.963 3.037 21 H -0.275 1.275 22 H -0.305 1.305 23 H -0.280 1.280 24 C 0.071 3.929 25 C -0.134 4.134 26 C 0.100 3.900 27 N -0.719 5.719 28 C 0.540 3.460 29 O -0.552 6.552 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.046 0.954 43 H 0.067 0.933 44 H 0.374 0.626 45 H 0.248 0.752 46 H 0.088 0.912 47 H 0.070 0.930 48 H 0.117 0.883 49 H 0.108 0.892 50 H 0.124 0.876 51 H 0.077 0.923 52 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.620 -13.442 -7.047 16.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.135 4.135 3 C -0.196 4.196 4 C -0.134 4.134 5 C -0.119 4.119 6 C 0.356 3.644 7 O -0.462 6.462 8 N -0.333 5.333 9 C -0.005 4.005 10 C -0.125 4.125 11 H 0.085 0.915 12 C -0.185 4.185 13 C 0.062 3.938 14 H 0.094 0.906 15 N -0.358 5.358 16 C -0.366 4.366 17 H 0.102 0.898 18 C -0.260 4.260 19 N -0.618 5.618 20 Si 0.793 3.207 21 H -0.201 1.201 22 H -0.232 1.232 23 H -0.207 1.207 24 C -0.054 4.054 25 C -0.172 4.172 26 C -0.023 4.023 27 N -0.374 5.374 28 C 0.324 3.676 29 O -0.429 6.429 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.206 0.794 45 H 0.057 0.943 46 H 0.106 0.894 47 H 0.088 0.912 48 H 0.136 0.864 49 H 0.126 0.874 50 H 0.142 0.858 51 H 0.095 0.905 52 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 5.411 -13.479 -7.897 16.532 hybrid contribution 0.266 0.719 0.350 0.842 sum 5.676 -12.761 -7.547 15.875 Atomic orbital electron populations 1.22243 0.96470 1.02252 1.00994 1.21431 0.95350 0.97102 0.99640 1.21763 1.01140 0.95117 1.01557 1.21776 1.02660 0.89533 0.99465 1.21577 0.92614 0.99883 0.97807 1.19394 0.87809 0.76331 0.80889 1.90704 1.74826 1.46424 1.34216 1.48365 1.07564 1.62149 1.15208 1.22302 0.79374 0.99584 0.99238 1.22545 0.96524 0.98130 0.95301 0.91516 1.21548 0.94571 1.01940 1.00406 1.21443 0.91224 0.89607 0.91534 0.90596 1.42463 1.73881 1.03429 1.15997 1.19586 1.31396 0.92940 0.92719 0.89784 1.25423 1.03406 0.95318 1.01863 1.69800 1.55327 0.97326 1.39333 0.85369 0.78807 0.75683 0.80815 1.20091 1.23246 1.20668 1.23491 0.99781 0.99026 0.83083 1.23158 1.03373 0.95068 0.95560 1.22339 1.04285 0.96805 0.78912 1.46104 1.56896 1.21078 1.13326 1.20239 0.77157 0.81874 0.88289 1.90598 1.60862 1.66235 1.25252 0.92332 0.93348 0.93282 0.89484 0.91883 0.92665 0.93168 0.89628 0.89210 0.91568 0.89738 0.91371 0.93478 0.91395 0.79397 0.94306 0.89378 0.91240 0.86429 0.87423 0.85828 0.90475 0.73879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.29 7.85 71.98 0.56 -4.73 16 2 C -0.12 -3.51 2.74 -10.79 -0.03 -3.54 16 3 C -0.14 -3.69 9.16 71.98 0.66 -3.03 16 4 C -0.10 -2.54 3.79 30.59 0.12 -2.43 16 5 C -0.11 -2.86 0.29 -52.94 -0.02 -2.87 16 6 C 0.57 17.11 3.65 87.66 0.32 17.43 16 7 O -0.58 -21.80 14.83 -3.03 -0.04 -21.85 16 8 N -0.60 -16.61 2.69 -811.77 -2.18 -18.80 16 9 C 0.12 3.11 6.36 86.86 0.55 3.66 16 10 C -0.10 -2.97 3.27 -9.40 -0.03 -3.00 16 11 H 0.07 2.13 8.01 -2.39 -0.02 2.11 16 12 C -0.13 -3.18 9.30 71.98 0.67 -2.51 16 13 C 0.17 5.52 3.08 46.19 0.14 5.66 16 14 H 0.08 2.36 7.96 -2.39 -0.02 2.34 16 15 N -0.72 -30.83 5.15 -317.29 -1.64 -32.47 16 16 C -0.23 -11.25 9.96 84.04 0.84 -10.41 16 17 H 0.08 3.76 7.83 -2.91 -0.02 3.73 16 18 C -0.07 -3.50 5.50 84.86 0.47 -3.04 16 19 N -0.97 -55.01 13.06 21.65 0.28 -54.73 16 20 Si 0.96 42.22 29.55 68.60 2.03 44.25 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 22 H -0.31 -14.01 7.11 99.48 0.71 -13.30 16 23 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 24 C 0.07 1.99 5.31 86.73 0.46 2.45 16 25 C -0.13 -2.26 5.65 31.65 0.18 -2.08 16 26 C 0.10 1.32 7.78 86.83 0.68 1.99 16 27 N -0.72 -13.82 6.24 -459.79 -2.87 -16.69 16 28 C 0.54 15.28 6.45 87.90 0.57 15.85 16 29 O -0.55 -19.93 15.00 -3.04 -0.05 -19.98 16 30 H 0.06 2.14 4.18 -2.39 -0.01 2.13 16 31 H 0.05 1.60 7.67 -2.38 -0.02 1.58 16 32 H 0.05 1.53 8.09 -2.39 -0.02 1.51 16 33 H 0.09 3.01 5.02 -2.39 -0.01 3.00 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.09 2.38 4.80 -2.39 -0.01 2.36 16 38 H 0.09 2.04 8.10 -2.38 -0.02 2.03 16 39 H 0.07 1.87 8.09 -2.38 -0.02 1.85 16 40 H 0.08 1.96 8.04 -2.38 -0.02 1.94 16 41 H 0.07 1.50 8.11 -2.39 -0.02 1.49 16 42 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.37 18.01 7.76 -92.71 -0.72 17.30 16 45 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 46 H 0.09 2.09 5.63 -2.39 -0.01 2.08 16 47 H 0.07 2.20 5.23 -2.39 -0.01 2.19 16 48 H 0.12 1.55 7.89 -2.39 -0.02 1.53 16 49 H 0.11 1.77 4.88 -2.39 -0.01 1.76 16 50 H 0.12 0.76 8.14 -2.38 -0.02 0.74 16 51 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.42 6.41 8.96 -92.71 -0.83 5.58 16 Total: -1.00 -68.70 389.50 1.06 -67.64 By element: Atomic # 1 Polarization: 43.82 SS G_CDS: -0.60 Total: 43.22 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 6.13 Total: 9.41 kcal Atomic # 7 Polarization: -116.28 SS G_CDS: -6.41 Total: -122.69 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -0.09 Total: -41.82 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -68.70 1.06 -67.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214897337.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.063 kcal (2) G-P(sol) polarization free energy of solvation -68.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds