Wall clock time and date at job start Tue Mar 31 2020 20:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21279 * 120.00000 * 2 1 4 4 N 1.34781 * 119.99882 * 179.97438 * 2 1 3 5 5 C 1.46495 * 119.99700 * 185.17526 * 4 2 1 6 6 C 1.50701 * 109.47061 * 295.96560 * 5 4 2 7 7 O 1.21286 * 119.99531 * 140.49673 * 6 5 4 8 8 N 1.34776 * 120.00491 * 320.50099 * 6 5 4 9 9 C 1.47021 * 125.65117 * 184.94780 * 8 6 5 10 10 C 1.54321 * 107.26896 * 178.89153 * 9 8 6 11 11 H 1.08999 * 110.71849 * 96.17147 * 10 9 8 12 12 C 1.53001 * 110.86928 * 219.36591 * 10 9 8 13 13 C 1.55154 * 102.94385 * 337.80450 * 10 9 8 14 14 H 1.08993 * 111.00209 * 277.42321 * 13 10 9 15 15 N 1.46505 * 111.00026 * 153.61556 * 13 10 9 16 16 C 1.36939 * 119.99882 * 153.44152 * 15 13 10 17 17 H 1.08001 * 119.99510 * 5.03017 * 16 15 13 18 18 C 1.38812 * 119.99962 * 185.03580 * 16 15 13 19 19 N 1.31615 * 120.00194 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99659 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47202 * 89.99911 * 20 18 16 22 22 H 1.48499 * 109.47176 * 209.99877 * 20 18 16 23 23 H 1.48501 * 109.47357 * 329.99726 * 20 18 16 24 24 C 1.47428 * 125.64422 * 4.88854 * 8 6 5 25 25 C 1.52994 * 109.47559 * 55.96915 * 5 4 2 26 26 C 1.53001 * 109.47074 * 59.99994 * 25 5 4 27 27 C 1.52996 * 109.47465 * 59.99913 * 26 25 5 28 28 C 1.53007 * 109.47146 * 300.00548 * 27 26 25 29 29 C 1.52997 * 109.47078 * 59.99553 * 28 27 26 30 30 H 1.08999 * 109.46837 * 185.00319 * 1 2 3 31 31 H 1.09004 * 109.46848 * 305.00349 * 1 2 3 32 32 H 1.08991 * 109.46683 * 65.00576 * 1 2 3 33 33 H 0.97003 * 119.99696 * 5.17658 * 4 2 1 34 34 H 1.08994 * 109.88496 * 59.47213 * 9 8 6 35 35 H 1.08998 * 110.00512 * 298.38122 * 9 8 6 36 36 H 1.09007 * 109.46885 * 173.60854 * 12 10 9 37 37 H 1.08995 * 109.47667 * 293.61388 * 12 10 9 38 38 H 1.09004 * 109.46803 * 53.62108 * 12 10 9 39 39 H 0.96998 * 120.00075 * 333.43618 * 15 13 10 40 40 H 0.96996 * 120.00204 * 180.02562 * 19 18 16 41 41 H 1.08999 * 110.36573 * 85.33828 * 24 8 6 42 42 H 1.08996 * 110.36623 * 323.01265 * 24 8 6 43 43 H 1.09000 * 109.47641 * 179.97438 * 25 5 4 44 44 H 1.08994 * 109.47293 * 300.00065 * 25 5 4 45 45 H 1.09007 * 109.47088 * 300.00441 * 26 25 5 46 46 H 1.08998 * 109.47078 * 180.02562 * 26 25 5 47 47 H 1.08993 * 109.47741 * 180.02562 * 27 26 25 48 48 H 1.09006 * 109.47059 * 59.99631 * 27 26 25 49 49 H 1.08994 * 109.46820 * 299.99503 * 28 27 26 50 50 H 1.08995 * 109.46871 * 179.97438 * 28 27 26 51 51 H 1.09007 * 109.46841 * 180.02562 * 29 28 27 52 52 H 1.08994 * 109.47336 * 60.00266 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6414 -1.1697 0.1150 6 6 4.2409 -0.4921 -1.0902 7 8 5.2012 0.2373 -0.9606 8 7 3.7099 -0.6965 -2.3120 9 6 4.2527 -0.1846 -3.5788 10 6 3.3330 -0.6917 -4.7095 11 1 2.5945 0.0650 -4.9745 12 6 4.1514 -1.0994 -5.9363 13 6 2.6471 -1.9284 -4.0713 14 1 3.2860 -2.8087 -4.1408 15 7 1.3417 -2.1807 -4.6866 16 6 0.8225 -3.4478 -4.6959 17 1 1.3359 -4.2454 -4.1794 18 6 -0.3634 -3.7070 -5.3692 19 7 -0.9891 -2.7349 -5.9982 20 14 -1.0711 -5.4357 -5.3824 21 1 -1.9821 -5.6065 -4.2222 22 1 -1.8278 -5.6512 -6.6418 23 1 0.0340 -6.4238 -5.2937 24 6 2.4892 -1.4715 -2.5996 25 6 4.0551 -0.4176 1.3814 26 6 3.4465 -1.1056 2.6050 27 6 3.9495 -2.5485 2.6816 28 6 3.5359 -3.3007 1.4150 29 6 4.1445 -2.6127 0.1915 30 1 -0.3633 -1.0238 0.0896 31 1 -0.3633 0.5895 0.8418 32 1 -0.3632 0.4342 -0.9314 33 1 1.6988 -2.0056 -0.0749 34 1 5.2648 -0.5608 -3.7274 35 1 4.2604 0.9053 -3.5679 36 1 3.4943 -1.5581 -6.6753 37 1 4.6235 -0.2169 -6.3679 38 1 4.9192 -1.8140 -5.6396 39 1 0.8451 -1.4501 -5.0873 40 1 -1.8179 -2.9160 -6.4684 41 1 1.6059 -0.8423 -2.4904 42 1 2.4243 -2.3360 -1.9389 43 1 5.1418 -0.4198 1.4668 44 1 3.6967 0.6103 1.3269 45 1 2.3598 -1.1038 2.5198 46 1 3.7409 -0.5695 3.5072 47 1 3.5156 -3.0388 3.5529 48 1 5.0362 -2.5504 2.7666 49 1 2.4493 -3.2989 1.3299 50 1 3.8946 -4.3285 1.4694 51 1 3.8494 -3.1484 -0.7109 52 1 5.2311 -2.6146 0.2766 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214984565.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:29 Heat of formation + Delta-G solvation = -66.827338 kcal Electronic energy + Delta-G solvation = -32419.636190 eV Core-core repulsion = 28418.806222 eV Total energy + Delta-G solvation = -4000.829969 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.23264 -38.97975 -38.04317 -37.10478 -34.26419 -33.86729 -32.30827 -30.98366 -30.94711 -30.71999 -28.61007 -27.55855 -26.37477 -24.14157 -23.24649 -22.88517 -21.49604 -20.97402 -20.02604 -19.59253 -18.99917 -17.26800 -17.05541 -16.92042 -16.16794 -15.65415 -15.43552 -15.16598 -14.53611 -14.43720 -14.14699 -14.01407 -13.78890 -13.58944 -13.12760 -13.11465 -12.98695 -12.81471 -12.76089 -12.58295 -12.40625 -12.32453 -12.13940 -11.96175 -11.87890 -11.61512 -11.28164 -11.14977 -11.08121 -10.85379 -10.76260 -10.70392 -10.62791 -10.42333 -10.29348 -10.03353 -9.89406 -9.77990 -9.58332 -9.13895 -8.75472 -8.27058 -7.13317 -5.91779 -3.22960 2.67422 2.75243 3.21098 3.32382 3.33757 3.39422 3.40818 4.41128 4.49079 4.50739 4.58318 4.81288 4.90592 4.97859 5.07060 5.11984 5.14616 5.21237 5.24290 5.29821 5.30934 5.44764 5.46817 5.52463 5.58040 5.61770 5.72275 5.75619 5.83618 5.86262 5.89321 5.92021 5.93755 5.96849 6.01404 6.05401 6.17020 6.20302 6.23003 6.33309 6.37016 6.42965 6.46659 6.57921 6.65391 6.83752 7.48443 7.55772 7.86435 8.25374 8.25899 8.44370 9.37471 9.91642 10.27145 11.29898 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011313 B = 0.004227 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.439071 B = 6623.197866 C = 7505.763066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.513 3.487 3 O -0.535 6.535 4 N -0.719 5.719 5 C 0.173 3.827 6 C 0.533 3.467 7 O -0.546 6.546 8 N -0.606 5.606 9 C 0.116 3.884 10 C -0.115 4.115 11 H 0.082 0.918 12 C -0.132 4.132 13 C 0.174 3.826 14 H 0.068 0.932 15 N -0.709 5.709 16 C -0.249 4.249 17 H 0.071 0.929 18 C -0.005 4.005 19 N -0.927 5.927 20 Si 0.906 3.094 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.082 3.918 25 C -0.116 4.116 26 C -0.114 4.114 27 C -0.120 4.120 28 C -0.116 4.116 29 C -0.121 4.121 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.405 0.595 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.386 0.614 40 H 0.257 0.743 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.065 0.935 50 H 0.070 0.930 51 H 0.078 0.922 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.933 0.159 14.058 15.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.301 3.699 3 O -0.411 6.411 4 N -0.375 5.375 5 C 0.084 3.916 6 C 0.320 3.680 7 O -0.423 6.423 8 N -0.339 5.339 9 C -0.007 4.007 10 C -0.135 4.135 11 H 0.100 0.900 12 C -0.190 4.190 13 C 0.062 3.938 14 H 0.086 0.914 15 N -0.348 5.348 16 C -0.379 4.379 17 H 0.089 0.911 18 C -0.202 4.202 19 N -0.574 5.574 20 Si 0.736 3.264 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.045 4.045 25 C -0.154 4.154 26 C -0.152 4.152 27 C -0.158 4.158 28 C -0.153 4.153 29 C -0.159 4.159 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.242 0.758 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.221 0.779 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.084 0.916 50 H 0.088 0.912 51 H 0.097 0.903 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.848 1.128 14.172 16.239 hybrid contribution -1.025 -1.099 -0.308 1.533 sum 6.823 0.030 13.864 15.452 Atomic orbital electron populations 1.21861 0.91419 1.04468 1.05349 1.20827 0.90656 0.83401 0.75004 1.90726 1.70388 1.31313 1.48695 1.46393 1.06124 1.09468 1.75553 1.20413 0.80662 0.96732 0.93805 1.20334 0.83369 0.81121 0.83164 1.90651 1.28764 1.37650 1.85227 1.48364 1.27626 1.52397 1.05476 1.21949 0.97261 0.98615 0.82841 1.22523 0.97454 0.99289 0.94267 0.90013 1.21642 0.99491 1.00503 0.97370 1.21410 0.88802 0.94537 0.89087 0.91391 1.42279 1.16533 1.08476 1.67504 1.19208 1.04434 0.86769 1.27535 0.91101 1.24760 0.98277 0.97450 0.99754 1.69657 1.18727 1.30879 1.38157 0.86228 0.78917 0.84103 0.77110 1.21638 1.21722 1.20691 1.23512 0.85992 0.94262 1.00695 1.21739 1.01589 1.00823 0.91284 1.21496 1.00636 0.95446 0.97626 1.21570 1.01138 0.95649 0.97418 1.21511 1.00869 0.99058 0.93891 1.21815 1.01990 0.92304 0.99808 0.90340 0.88985 0.88410 0.75814 0.91868 0.92204 0.91307 0.93305 0.93011 0.77942 0.93311 0.91874 0.91536 0.90410 0.89281 0.91988 0.91860 0.91933 0.91850 0.91596 0.91173 0.90325 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 10.38 36.01 0.37 -1.44 16 2 C 0.51 7.06 6.13 -10.98 -0.07 6.99 16 3 O -0.53 -9.64 14.30 5.56 0.08 -9.56 16 4 N -0.72 -8.55 1.78 -48.68 -0.09 -8.63 16 5 C 0.17 2.28 0.26 -132.97 -0.03 2.24 16 6 C 0.53 9.12 5.52 -10.99 -0.06 9.06 16 7 O -0.55 -11.11 16.37 5.55 0.09 -11.01 16 8 N -0.61 -10.02 3.33 -170.53 -0.57 -10.59 16 9 C 0.12 1.88 6.47 -3.07 -0.02 1.86 16 10 C -0.12 -1.86 3.19 -88.79 -0.28 -2.14 16 11 H 0.08 1.39 8.01 -51.93 -0.42 0.98 16 12 C -0.13 -1.94 9.17 37.16 0.34 -1.60 16 13 C 0.17 3.14 3.17 -65.78 -0.21 2.93 16 14 H 0.07 1.26 7.99 -51.93 -0.41 0.84 16 15 N -0.71 -15.78 5.23 -51.35 -0.27 -16.05 16 16 C -0.25 -6.16 9.95 -15.06 -0.15 -6.31 16 17 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 18 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 19 N -0.93 -25.95 13.06 55.49 0.72 -25.23 16 20 Si 0.91 20.67 29.55 -169.99 -5.02 15.64 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 24 C 0.08 1.32 4.94 -2.53 -0.01 1.31 16 25 C -0.12 -1.52 3.93 -26.73 -0.11 -1.63 16 26 C -0.11 -1.13 5.77 -26.73 -0.15 -1.29 16 27 C -0.12 -1.00 5.92 -26.73 -0.16 -1.15 16 28 C -0.12 -0.96 5.75 -26.73 -0.15 -1.12 16 29 C -0.12 -1.28 4.65 -26.73 -0.12 -1.41 16 30 H 0.08 0.67 7.94 -51.93 -0.41 0.26 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.40 4.01 6.58 -40.82 -0.27 3.74 16 34 H 0.06 0.98 7.78 -51.93 -0.40 0.58 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.71 8.07 -51.93 -0.42 0.29 16 39 H 0.39 9.37 7.79 -40.82 -0.32 9.05 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 41 H 0.06 1.11 7.24 -51.93 -0.38 0.74 16 42 H 0.07 0.98 5.16 -51.93 -0.27 0.72 16 43 H 0.08 1.06 7.90 -51.93 -0.41 0.65 16 44 H 0.09 1.44 6.06 -51.93 -0.31 1.13 16 45 H 0.06 0.62 7.55 -51.93 -0.39 0.22 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.07 0.51 6.95 -51.93 -0.36 0.15 16 50 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 51 H 0.08 0.86 6.92 -51.92 -0.36 0.50 16 52 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 395.15 15.07 5.95 5.95 Total: -1.00 -31.62 395.15 -8.92 -40.54 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -8.91 Total: 12.87 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -0.91 Total: 6.07 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.20 Total: -60.50 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: 0.17 Total: -20.57 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.62 -8.92 -40.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214984565.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.289 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds