Wall clock time and date at job start Tue Mar 31 2020 20:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21287 * 120.00343 * 2 1 4 4 N 1.34780 * 120.00175 * 179.72760 * 2 1 3 5 5 C 1.46503 * 120.00221 * 175.32280 * 4 2 1 6 6 H 1.09000 * 109.46761 * 39.32858 * 5 4 2 7 7 C 1.50694 * 109.47003 * 279.33059 * 5 4 2 8 8 O 1.21277 * 120.00596 * 340.00327 * 7 5 4 9 9 N 1.34779 * 119.99771 * 160.00017 * 7 5 4 10 10 C 1.47423 * 125.64923 * 180.02562 * 9 7 5 11 11 C 1.54910 * 104.83280 * 204.09393 * 10 9 7 12 12 H 1.08994 * 111.01012 * 81.06142 * 11 10 9 13 13 C 1.53005 * 111.00491 * 204.91524 * 11 10 9 14 14 C 1.55159 * 101.57884 * 322.98627 * 11 10 9 15 15 H 1.08999 * 110.72342 * 276.96242 * 14 11 10 16 16 N 1.46498 * 110.71981 * 153.86751 * 14 11 10 17 17 C 1.36936 * 120.00374 * 154.99917 * 16 14 11 18 18 H 1.08003 * 119.99741 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00621 * 179.97438 * 17 16 14 20 20 N 1.31620 * 119.99735 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00450 * 180.02562 * 19 17 16 22 22 H 1.48511 * 109.47085 * 59.99688 * 21 19 17 23 23 H 1.48500 * 109.47323 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47042 * 300.00051 * 21 19 17 25 25 C 1.47018 * 125.64820 * 359.69196 * 9 7 5 26 26 C 1.52998 * 109.46757 * 159.33124 * 5 4 2 27 27 C 1.54265 * 110.03390 * 57.33936 * 26 5 4 28 28 C 1.54962 * 104.15833 * 217.13539 * 27 26 5 29 29 C 1.54885 * 102.77952 * 37.88741 * 28 27 26 30 30 C 1.53879 * 110.03330 * 300.11680 * 26 5 4 31 31 H 1.09001 * 109.47095 * 89.99374 * 1 2 3 32 32 H 1.08995 * 109.47091 * 209.99854 * 1 2 3 33 33 H 1.09000 * 109.47104 * 329.99774 * 1 2 3 34 34 H 0.97002 * 119.99440 * 355.32938 * 4 2 1 35 35 H 1.09000 * 110.36745 * 322.92681 * 10 9 7 36 36 H 1.08997 * 110.37289 * 85.13854 * 10 9 7 37 37 H 1.09000 * 109.47021 * 58.54403 * 13 11 10 38 38 H 1.09005 * 109.47131 * 178.54035 * 13 11 10 39 39 H 1.09000 * 109.46893 * 298.54579 * 13 11 10 40 40 H 0.97007 * 120.00054 * 334.99669 * 16 14 11 41 41 H 0.96998 * 120.00115 * 180.02562 * 20 19 17 42 42 H 1.09008 * 109.88337 * 298.39160 * 25 9 7 43 43 H 1.08996 * 109.88593 * 59.55804 * 25 9 7 44 44 H 1.09003 * 110.01332 * 178.73217 * 26 5 4 45 45 H 1.08997 * 110.48438 * 335.78237 * 27 26 5 46 46 H 1.08992 * 110.48368 * 98.42769 * 27 26 5 47 47 H 1.09005 * 110.71888 * 279.57551 * 28 27 26 48 48 H 1.09003 * 110.92620 * 156.29751 * 28 27 26 49 49 H 1.09004 * 110.49054 * 203.40570 * 29 28 27 50 50 H 1.08996 * 110.60124 * 80.82042 * 29 28 27 51 51 H 1.08996 * 110.03629 * 238.57305 * 30 26 5 52 52 H 1.09002 * 110.02846 * 359.95738 * 30 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0055 5 6 3.6423 -1.1698 -0.0979 6 1 4.0495 -0.3467 0.4893 7 6 4.0440 -1.0044 -1.5409 8 8 3.2509 -1.2543 -2.4237 9 7 5.2847 -0.5786 -1.8504 10 6 5.8076 -0.3733 -3.2134 11 6 7.3448 -0.5022 -3.0720 12 1 7.6494 -1.5486 -3.0557 13 6 8.0639 0.2586 -4.1879 14 6 7.5883 0.1695 -1.6947 15 1 7.6447 1.2530 -1.7985 16 7 8.8064 -0.3536 -1.0710 17 6 9.4866 0.4041 -0.1555 18 1 9.1248 1.3873 0.1072 19 6 10.6404 -0.0916 0.4359 20 7 11.0805 -1.2904 0.1169 21 14 11.5678 0.9417 1.6853 22 1 10.6778 1.2457 2.8347 23 1 12.7558 0.1907 2.1649 24 1 12.0068 2.2103 1.0503 25 6 6.3386 -0.2354 -0.8845 26 6 4.1888 -2.4958 0.4349 27 6 3.5688 -3.6741 -0.3442 28 6 3.3681 -4.7741 0.7287 29 6 2.9299 -3.9629 1.9732 30 6 3.7832 -2.6793 1.9079 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6983 -2.0055 0.0779 35 1 5.4231 -1.1395 -3.8866 36 1 5.5402 0.6189 -3.5769 37 1 7.7757 1.3093 -4.1554 38 1 9.1418 0.1731 -4.0498 39 1 7.7865 -0.1645 -5.1533 40 1 9.1311 -1.2368 -1.3067 41 1 11.8865 -1.6370 0.5303 42 1 6.0130 0.5972 -0.2607 43 1 6.5671 -1.1004 -0.2620 44 1 5.2746 -2.5163 0.3413 45 1 2.6113 -3.3839 -0.7766 46 1 4.2509 -4.0184 -1.1215 47 1 4.3029 -5.3010 0.9205 48 1 2.5872 -5.4728 0.4285 49 1 3.1456 -4.5182 2.8861 50 1 1.8690 -3.7190 1.9181 51 1 4.6721 -2.7898 2.5290 52 1 3.1977 -1.8233 2.2433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215106326.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:11 Heat of formation + Delta-G solvation = -73.195647 kcal Electronic energy + Delta-G solvation = -31352.304393 eV Core-core repulsion = 27351.198274 eV Total energy + Delta-G solvation = -4001.106119 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.79432 -39.18057 -38.25419 -37.29004 -34.30534 -34.06938 -32.58415 -31.13807 -30.68253 -29.06231 -28.86631 -27.53524 -26.79462 -24.79185 -23.88522 -21.63468 -21.30589 -20.58387 -20.01805 -19.86981 -18.95202 -17.20196 -17.18346 -16.97388 -16.45021 -15.88584 -15.62527 -15.26711 -14.89113 -14.64736 -14.43185 -13.89968 -13.66252 -13.51851 -13.43004 -13.37703 -13.04981 -13.02435 -12.72185 -12.55643 -12.35345 -12.29070 -12.07782 -11.53608 -11.48187 -11.28582 -11.21566 -11.14630 -11.00835 -10.95064 -10.80896 -10.76656 -10.64867 -10.58527 -10.28236 -10.09570 -9.99400 -9.92537 -9.74168 -9.06480 -8.91357 -8.29616 -7.11136 -5.86569 -3.17287 2.50526 2.78838 3.00045 3.39160 3.42564 3.44629 3.45955 4.34077 4.38749 4.50311 4.51859 4.68371 4.74948 4.97307 5.03789 5.08779 5.15959 5.16659 5.24183 5.25056 5.30865 5.37610 5.46370 5.50374 5.56592 5.58553 5.64532 5.67737 5.74630 5.75746 5.79745 5.83503 5.90631 5.94175 6.00337 6.08428 6.11410 6.19042 6.21088 6.24386 6.30390 6.40750 6.49826 6.57679 6.62993 6.86576 7.38305 7.62335 7.81227 8.13428 8.30550 8.37894 9.43033 9.96265 10.31630 11.35182 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010515 B = 0.003611 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.242882 B = 7751.546107 C = 8579.337595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.513 3.487 3 O -0.544 6.544 4 N -0.706 5.706 5 C 0.139 3.861 6 H 0.109 0.891 7 C 0.522 3.478 8 O -0.550 6.550 9 N -0.608 5.608 10 C 0.114 3.886 11 C -0.114 4.114 12 H 0.083 0.917 13 C -0.132 4.132 14 C 0.178 3.822 15 H 0.069 0.931 16 N -0.710 5.710 17 C -0.249 4.249 18 H 0.072 0.928 19 C -0.007 4.007 20 N -0.930 5.930 21 Si 0.907 3.093 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.069 3.931 26 C -0.096 4.096 27 C -0.123 4.123 28 C -0.124 4.124 29 C -0.123 4.123 30 C -0.120 4.120 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.403 0.597 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.048 0.952 40 H 0.387 0.613 41 H 0.257 0.743 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.098 0.902 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.066 0.934 50 H 0.063 0.937 51 H 0.073 0.927 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.978 -5.139 -0.209 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.300 3.700 3 O -0.421 6.421 4 N -0.359 5.359 5 C 0.030 3.970 6 H 0.126 0.874 7 C 0.309 3.691 8 O -0.428 6.428 9 N -0.341 5.341 10 C -0.009 4.009 11 C -0.134 4.134 12 H 0.101 0.899 13 C -0.190 4.190 14 C 0.065 3.935 15 H 0.087 0.913 16 N -0.349 5.349 17 C -0.379 4.379 18 H 0.090 0.910 19 C -0.203 4.203 20 N -0.577 5.577 21 Si 0.737 3.263 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.211 1.211 25 C -0.057 4.057 26 C -0.115 4.115 27 C -0.161 4.161 28 C -0.162 4.162 29 C -0.161 4.161 30 C -0.158 4.158 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.240 0.760 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.221 0.779 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.116 0.884 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.081 0.919 51 H 0.091 0.909 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.927 -4.406 -0.525 19.440 hybrid contribution 0.508 -0.117 0.709 0.880 sum -18.418 -4.523 0.184 18.966 Atomic orbital electron populations 1.21852 0.91582 1.04605 1.04883 1.20827 0.90693 0.83429 0.75069 1.90746 1.70730 1.31375 1.49236 1.45803 1.06143 1.09190 1.74789 1.20826 0.81837 1.00567 0.93731 0.87354 1.20570 0.80664 0.76576 0.91306 1.90629 1.50607 1.51805 1.49754 1.48485 1.12034 1.64729 1.08849 1.22246 0.93566 1.01018 0.84042 1.22646 0.92698 1.01092 0.96936 0.89891 1.21596 1.01346 0.99478 0.96590 1.21245 0.85940 0.97183 0.89109 0.91333 1.42338 1.24362 1.19407 1.48820 1.19217 1.04678 0.98501 1.15551 0.91015 1.24739 0.98391 0.96783 1.00401 1.69647 1.24854 1.16836 1.46373 0.86284 0.79322 0.79336 0.81327 1.21144 1.21675 1.21143 1.23418 0.88866 1.00463 0.92980 1.22045 1.01878 0.91960 0.95613 1.22474 1.01255 0.94560 0.97766 1.22520 1.01493 0.97272 0.94909 1.22365 0.99303 0.96071 0.98357 1.22211 1.00426 0.98176 0.94974 0.88714 0.90317 0.88934 0.76043 0.91109 0.91774 0.92802 0.91399 0.93256 0.77896 0.93318 0.92107 0.90765 0.88382 0.91065 0.91189 0.91161 0.91534 0.91509 0.91869 0.90862 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 10.31 36.00 0.37 -1.01 16 2 C 0.51 6.70 7.83 -10.99 -0.09 6.61 16 3 O -0.54 -9.69 16.81 5.55 0.09 -9.59 16 4 N -0.71 -8.27 3.80 -54.93 -0.21 -8.48 16 5 C 0.14 1.91 1.33 -69.08 -0.09 1.81 16 6 H 0.11 1.65 7.03 -51.93 -0.36 1.29 16 7 C 0.52 8.68 6.39 -10.99 -0.07 8.61 16 8 O -0.55 -10.32 16.81 5.56 0.09 -10.22 16 9 N -0.61 -10.08 3.33 -170.52 -0.57 -10.65 16 10 C 0.11 1.78 6.37 -2.53 -0.02 1.77 16 11 C -0.11 -1.81 3.27 -88.47 -0.29 -2.10 16 12 H 0.08 1.38 8.01 -51.93 -0.42 0.96 16 13 C -0.13 -1.90 9.29 37.16 0.35 -1.56 16 14 C 0.18 3.32 3.08 -66.09 -0.20 3.11 16 15 H 0.07 1.32 7.96 -51.93 -0.41 0.90 16 16 N -0.71 -16.38 5.15 -51.65 -0.27 -16.64 16 17 C -0.25 -6.46 9.96 -15.06 -0.15 -6.61 16 18 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 19 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 20 N -0.93 -26.65 13.06 55.49 0.72 -25.92 16 21 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.07 1.19 5.97 -3.06 -0.02 1.17 16 26 C -0.10 -1.11 2.76 -89.50 -0.25 -1.36 16 27 C -0.12 -1.31 5.48 -25.03 -0.14 -1.44 16 28 C -0.12 -1.07 6.91 -24.70 -0.17 -1.24 16 29 C -0.12 -0.98 6.83 -25.07 -0.17 -1.15 16 30 C -0.12 -1.17 6.17 -25.61 -0.16 -1.33 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.40 3.67 6.90 -40.82 -0.28 3.38 16 35 H 0.07 1.09 8.04 -51.93 -0.42 0.67 16 36 H 0.06 0.98 8.04 -51.93 -0.42 0.56 16 37 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.39 9.54 7.76 -40.82 -0.32 9.23 16 41 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.06 1.07 7.94 -51.92 -0.41 0.66 16 43 H 0.07 1.33 6.57 -51.93 -0.34 0.99 16 44 H 0.10 1.29 6.65 -51.93 -0.35 0.95 16 45 H 0.07 0.76 6.28 -51.93 -0.33 0.43 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 51 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 52 H 0.07 0.68 7.37 -51.93 -0.38 0.30 16 LS Contribution 409.61 15.07 6.17 6.17 Total: -1.00 -32.35 409.61 -9.22 -41.57 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -9.05 Total: 12.25 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -1.19 Total: 5.02 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -0.32 Total: -61.69 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: 0.19 Total: -19.82 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.35 -9.22 -41.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215106326.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.626 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds