Wall clock time and date at job start Tue Mar 31 2020 20:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21287 * 120.00343 * 2 1 4 4 N 1.34780 * 120.00175 * 179.72760 * 2 1 3 5 5 C 1.46503 * 120.00221 * 175.32280 * 4 2 1 6 6 H 1.09000 * 109.46761 * 39.32858 * 5 4 2 7 7 C 1.50694 * 109.47003 * 279.33059 * 5 4 2 8 8 O 1.21277 * 120.00596 * 340.00327 * 7 5 4 9 9 N 1.34779 * 119.99771 * 160.00017 * 7 5 4 10 10 C 1.47423 * 125.64923 * 180.02562 * 9 7 5 11 11 C 1.54910 * 104.83280 * 204.09393 * 10 9 7 12 12 H 1.08994 * 111.01012 * 81.06142 * 11 10 9 13 13 C 1.53005 * 111.00491 * 204.91524 * 11 10 9 14 14 C 1.55159 * 101.57884 * 322.98627 * 11 10 9 15 15 H 1.08999 * 110.72342 * 276.96242 * 14 11 10 16 16 N 1.46498 * 110.71981 * 153.86751 * 14 11 10 17 17 C 1.36936 * 120.00374 * 154.99917 * 16 14 11 18 18 H 1.08003 * 119.99741 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00621 * 179.97438 * 17 16 14 20 20 N 1.31620 * 119.99735 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00450 * 180.02562 * 19 17 16 22 22 H 1.48511 * 109.47085 * 59.99688 * 21 19 17 23 23 H 1.48500 * 109.47323 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47042 * 300.00051 * 21 19 17 25 25 C 1.47018 * 125.64820 * 359.69196 * 9 7 5 26 26 C 1.52998 * 109.46757 * 159.33124 * 5 4 2 27 27 C 1.54265 * 110.03390 * 57.33936 * 26 5 4 28 28 C 1.54962 * 104.15833 * 217.13539 * 27 26 5 29 29 C 1.54885 * 102.77952 * 37.88741 * 28 27 26 30 30 C 1.53879 * 110.03330 * 300.11680 * 26 5 4 31 31 H 1.09001 * 109.47095 * 89.99374 * 1 2 3 32 32 H 1.08995 * 109.47091 * 209.99854 * 1 2 3 33 33 H 1.09000 * 109.47104 * 329.99774 * 1 2 3 34 34 H 0.97002 * 119.99440 * 355.32938 * 4 2 1 35 35 H 1.09000 * 110.36745 * 322.92681 * 10 9 7 36 36 H 1.08997 * 110.37289 * 85.13854 * 10 9 7 37 37 H 1.09000 * 109.47021 * 58.54403 * 13 11 10 38 38 H 1.09005 * 109.47131 * 178.54035 * 13 11 10 39 39 H 1.09000 * 109.46893 * 298.54579 * 13 11 10 40 40 H 0.97007 * 120.00054 * 334.99669 * 16 14 11 41 41 H 0.96998 * 120.00115 * 180.02562 * 20 19 17 42 42 H 1.09008 * 109.88337 * 298.39160 * 25 9 7 43 43 H 1.08996 * 109.88593 * 59.55804 * 25 9 7 44 44 H 1.09003 * 110.01332 * 178.73217 * 26 5 4 45 45 H 1.08997 * 110.48438 * 335.78237 * 27 26 5 46 46 H 1.08992 * 110.48368 * 98.42769 * 27 26 5 47 47 H 1.09005 * 110.71888 * 279.57551 * 28 27 26 48 48 H 1.09003 * 110.92620 * 156.29751 * 28 27 26 49 49 H 1.09004 * 110.49054 * 203.40570 * 29 28 27 50 50 H 1.08996 * 110.60124 * 80.82042 * 29 28 27 51 51 H 1.08996 * 110.03629 * 238.57305 * 30 26 5 52 52 H 1.09002 * 110.02846 * 359.95738 * 30 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0055 5 6 3.6423 -1.1698 -0.0979 6 1 4.0495 -0.3467 0.4893 7 6 4.0440 -1.0044 -1.5409 8 8 3.2509 -1.2543 -2.4237 9 7 5.2847 -0.5786 -1.8504 10 6 5.8076 -0.3733 -3.2134 11 6 7.3448 -0.5022 -3.0720 12 1 7.6494 -1.5486 -3.0557 13 6 8.0639 0.2586 -4.1879 14 6 7.5883 0.1695 -1.6947 15 1 7.6447 1.2530 -1.7985 16 7 8.8064 -0.3536 -1.0710 17 6 9.4866 0.4041 -0.1555 18 1 9.1248 1.3873 0.1072 19 6 10.6404 -0.0916 0.4359 20 7 11.0805 -1.2904 0.1169 21 14 11.5678 0.9417 1.6853 22 1 10.6778 1.2457 2.8347 23 1 12.7558 0.1907 2.1649 24 1 12.0068 2.2103 1.0503 25 6 6.3386 -0.2354 -0.8845 26 6 4.1888 -2.4958 0.4349 27 6 3.5688 -3.6741 -0.3442 28 6 3.3681 -4.7741 0.7287 29 6 2.9299 -3.9629 1.9732 30 6 3.7832 -2.6793 1.9079 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6983 -2.0055 0.0779 35 1 5.4231 -1.1395 -3.8866 36 1 5.5402 0.6189 -3.5769 37 1 7.7757 1.3093 -4.1554 38 1 9.1418 0.1731 -4.0498 39 1 7.7865 -0.1645 -5.1533 40 1 9.1311 -1.2368 -1.3067 41 1 11.8865 -1.6370 0.5303 42 1 6.0130 0.5972 -0.2607 43 1 6.5671 -1.1004 -0.2620 44 1 5.2746 -2.5163 0.3413 45 1 2.6113 -3.3839 -0.7766 46 1 4.2509 -4.0184 -1.1215 47 1 4.3029 -5.3010 0.9205 48 1 2.5872 -5.4728 0.4285 49 1 3.1456 -4.5182 2.8861 50 1 1.8690 -3.7190 1.9181 51 1 4.6721 -2.7898 2.5290 52 1 3.1977 -1.8233 2.2433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215106326.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:10 Heat of formation + Delta-G solvation = -93.937639 kcal Electronic energy + Delta-G solvation = -31353.203833 eV Core-core repulsion = 27351.198274 eV Total energy + Delta-G solvation = -4002.005560 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.96643 -40.44285 -39.29940 -38.61313 -35.88331 -35.34339 -34.03852 -32.59057 -31.97991 -29.84753 -29.66778 -29.18095 -27.96366 -26.07397 -25.58705 -23.10954 -22.22807 -21.53011 -21.41334 -20.88564 -20.20029 -19.11528 -18.28065 -18.14249 -17.64896 -17.21206 -16.73374 -16.44487 -16.14909 -15.90043 -15.71909 -15.35875 -15.17228 -14.73209 -14.67157 -14.33060 -14.28896 -14.23297 -14.05316 -13.67439 -13.48046 -13.28254 -13.06108 -13.02000 -12.88208 -12.82361 -12.44868 -12.26400 -12.17578 -12.06760 -12.04416 -11.96438 -11.87407 -11.72335 -11.62250 -11.53983 -11.43508 -11.21821 -11.04978 -10.93917 -10.13580 -9.70891 -9.06544 -7.94188 -5.23983 1.39494 1.50424 1.51183 1.52535 1.57420 1.89336 2.28183 2.56992 3.25370 3.36681 3.46334 3.55597 3.64264 3.75307 3.81674 3.86910 3.91130 4.15859 4.18441 4.21976 4.29637 4.42454 4.49070 4.49860 4.50419 4.58723 4.60370 4.62211 4.64415 4.72135 4.80614 4.84364 4.85939 4.90833 5.02353 5.06113 5.07974 5.08188 5.16982 5.24121 5.25629 5.29338 5.29898 5.36408 5.45674 5.48216 5.54549 6.26026 6.42230 6.46507 7.00293 7.17496 7.34520 8.04218 8.30020 9.28119 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010515 B = 0.003611 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.242882 B = 7751.546107 C = 8579.337595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.503 3.497 3 O -0.599 6.599 4 N -0.693 5.693 5 C 0.144 3.856 6 H 0.090 0.910 7 C 0.517 3.483 8 O -0.570 6.570 9 N -0.611 5.611 10 C 0.116 3.884 11 C -0.101 4.101 12 H 0.076 0.924 13 C -0.127 4.127 14 C 0.173 3.827 15 H 0.066 0.934 16 N -0.717 5.717 17 C -0.245 4.245 18 H 0.076 0.924 19 C -0.063 4.063 20 N -0.964 5.964 21 Si 0.966 3.034 22 H -0.279 1.279 23 H -0.297 1.297 24 H -0.279 1.279 25 C 0.084 3.916 26 C -0.092 4.092 27 C -0.120 4.120 28 C -0.119 4.119 29 C -0.116 4.116 30 C -0.117 4.117 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.418 0.582 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.074 0.926 40 H 0.377 0.623 41 H 0.251 0.749 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.051 0.949 47 H 0.063 0.937 48 H 0.085 0.915 49 H 0.077 0.923 50 H 0.083 0.917 51 H 0.066 0.934 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.227 -5.535 0.120 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.293 3.707 3 O -0.480 6.480 4 N -0.347 5.347 5 C 0.035 3.965 6 H 0.108 0.892 7 C 0.305 3.695 8 O -0.450 6.450 9 N -0.344 5.344 10 C -0.006 4.006 11 C -0.121 4.121 12 H 0.094 0.906 13 C -0.185 4.185 14 C 0.062 3.938 15 H 0.084 0.916 16 N -0.356 5.356 17 C -0.377 4.377 18 H 0.094 0.906 19 C -0.256 4.256 20 N -0.614 5.614 21 Si 0.795 3.205 22 H -0.205 1.205 23 H -0.223 1.223 24 H -0.206 1.206 25 C -0.042 4.042 26 C -0.111 4.111 27 C -0.158 4.158 28 C -0.156 4.156 29 C -0.154 4.154 30 C -0.155 4.155 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.116 0.884 34 H 0.257 0.743 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.210 0.790 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.070 0.930 47 H 0.082 0.918 48 H 0.104 0.896 49 H 0.095 0.905 50 H 0.102 0.898 51 H 0.085 0.915 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.231 -4.809 -0.206 21.770 hybrid contribution 1.147 0.026 0.535 1.266 sum -20.085 -4.783 0.329 20.649 Atomic orbital electron populations 1.21892 0.87349 1.06736 1.06023 1.21821 0.92736 0.82629 0.73546 1.90720 1.72219 1.33274 1.51807 1.45760 1.05208 1.09892 1.73878 1.20690 0.83307 1.00970 0.91541 0.89233 1.21105 0.80226 0.75761 0.92363 1.90606 1.50995 1.52770 1.50664 1.48543 1.12074 1.64716 1.09054 1.22288 0.92968 1.01666 0.83714 1.22534 0.93219 1.00586 0.95776 0.90590 1.21557 0.99888 0.99920 0.97089 1.21385 0.84711 0.97120 0.90588 0.91583 1.42394 1.25590 1.18816 1.48783 1.19553 1.04399 0.98611 1.15088 0.90619 1.25433 0.99649 0.97909 1.02634 1.69789 1.25254 1.18428 1.47890 0.85338 0.77865 0.77920 0.79379 1.20533 1.22316 1.20563 1.23052 0.88563 0.99913 0.92667 1.22007 1.00559 0.91324 0.97245 1.22440 1.00673 0.94817 0.97847 1.22501 1.01948 0.96847 0.94326 1.22367 0.99982 0.94636 0.98398 1.22190 1.00661 0.99519 0.93126 0.87823 0.86672 0.88408 0.74259 0.90508 0.90974 0.92008 0.93152 0.90731 0.79042 0.93972 0.92494 0.91599 0.90569 0.90750 0.93015 0.91789 0.89612 0.90452 0.89813 0.91522 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 10.31 71.23 0.73 -1.45 16 2 C 0.50 12.61 7.83 87.66 0.69 13.30 16 3 O -0.60 -21.53 16.81 -3.05 -0.05 -21.58 16 4 N -0.69 -15.43 3.80 -446.09 -1.69 -17.13 16 5 C 0.14 3.98 1.33 44.24 0.06 4.04 16 6 H 0.09 2.84 7.03 -2.39 -0.02 2.82 16 7 C 0.52 17.29 6.39 87.65 0.56 17.85 16 8 O -0.57 -21.17 16.81 -3.02 -0.05 -21.23 16 9 N -0.61 -20.46 3.33 -811.79 -2.70 -23.16 16 10 C 0.12 3.56 6.37 86.86 0.55 4.11 16 11 C -0.10 -3.20 3.27 -9.40 -0.03 -3.23 16 12 H 0.08 2.53 8.01 -2.39 -0.02 2.52 16 13 C -0.13 -3.52 9.29 71.98 0.67 -2.85 16 14 C 0.17 6.52 3.08 46.19 0.14 6.66 16 15 H 0.07 2.54 7.96 -2.39 -0.02 2.52 16 16 N -0.72 -33.75 5.15 -317.31 -1.64 -35.39 16 17 C -0.24 -12.86 9.96 84.03 0.84 -12.02 16 18 H 0.08 3.85 7.83 -2.91 -0.02 3.82 16 19 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 20 N -0.96 -56.37 13.06 21.65 0.28 -56.09 16 21 Si 0.97 44.59 29.55 68.60 2.03 46.62 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 25 C 0.08 2.99 5.97 86.73 0.52 3.51 16 26 C -0.09 -2.14 2.76 -10.07 -0.03 -2.17 16 27 C -0.12 -2.45 5.48 31.69 0.17 -2.27 16 28 C -0.12 -1.79 6.91 31.91 0.22 -1.57 16 29 C -0.12 -1.53 6.83 31.67 0.22 -1.32 16 30 C -0.12 -2.17 6.17 31.32 0.19 -1.98 16 31 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.42 6.61 6.90 -92.71 -0.64 5.97 16 35 H 0.08 2.29 8.04 -2.39 -0.02 2.27 16 36 H 0.07 2.12 8.04 -2.39 -0.02 2.10 16 37 H 0.06 1.61 8.11 -2.39 -0.02 1.59 16 38 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.38 19.14 7.76 -92.70 -0.72 18.42 16 41 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 42 H 0.06 2.06 7.94 -2.38 -0.02 2.04 16 43 H 0.07 2.46 6.57 -2.39 -0.02 2.45 16 44 H 0.08 2.10 6.65 -2.39 -0.02 2.09 16 45 H 0.07 1.46 6.28 -2.39 -0.01 1.45 16 46 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 48 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 50 H 0.08 0.79 8.14 -2.39 -0.02 0.78 16 51 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 52 H 0.07 1.29 7.37 -2.39 -0.02 1.27 16 Total: -1.00 -71.20 409.61 1.71 -69.49 By element: Atomic # 1 Polarization: 41.28 SS G_CDS: -0.44 Total: 40.84 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 5.97 Total: 17.62 kcal Atomic # 7 Polarization: -126.02 SS G_CDS: -5.75 Total: -131.76 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -0.10 Total: -42.81 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -71.20 1.71 -69.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215106326.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.447 kcal (2) G-P(sol) polarization free energy of solvation -71.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds