Wall clock time and date at job start Tue Mar 31 2020 20:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21278 * 119.99836 * 2 1 4 4 N 1.34775 * 120.00087 * 179.97438 * 2 1 3 5 5 C 1.46501 * 119.99744 * 179.97438 * 4 2 1 6 6 H 1.09005 * 109.47062 * 179.97438 * 5 4 2 7 7 C 1.50700 * 109.47274 * 299.99999 * 5 4 2 8 8 O 1.21279 * 119.99976 * 37.77162 * 7 5 4 9 9 N 1.34778 * 120.00124 * 217.76851 * 7 5 4 10 10 C 1.47021 * 125.64924 * 185.17814 * 9 7 5 11 11 C 1.54334 * 107.26545 * 178.85244 * 10 9 7 12 12 H 1.09001 * 110.66669 * 96.51956 * 11 10 9 13 13 C 1.53000 * 110.84915 * 219.67123 * 11 10 9 14 14 C 1.55158 * 103.02223 * 338.13643 * 11 10 9 15 15 H 1.08992 * 111.00487 * 277.23907 * 14 11 10 16 16 N 1.46495 * 111.00662 * 153.38138 * 14 11 10 17 17 C 1.36937 * 119.99967 * 161.35203 * 16 14 11 18 18 H 1.07994 * 119.99950 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99640 * 180.02562 * 17 16 14 20 20 N 1.31618 * 120.00393 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99661 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47194 * 60.00083 * 21 19 17 23 23 H 1.48504 * 109.47274 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47556 * 300.00062 * 21 19 17 25 25 C 1.47426 * 125.64620 * 5.48629 * 9 7 5 26 26 C 1.53001 * 109.47282 * 60.00672 * 5 4 2 27 27 C 1.54883 * 110.75868 * 57.35729 * 26 5 4 28 28 C 1.54266 * 104.19825 * 156.25916 * 27 26 5 29 29 C 1.53880 * 106.59579 * 336.39718 * 28 27 26 30 30 C 1.54265 * 106.59993 * 359.97438 * 29 28 27 31 31 H 1.08998 * 109.46807 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47433 * 300.00297 * 1 2 3 33 33 H 1.08996 * 109.47189 * 60.00865 * 1 2 3 34 34 H 0.97002 * 120.00426 * 0.02562 * 4 2 1 35 35 H 1.09008 * 109.87568 * 298.39463 * 10 9 7 36 36 H 1.08999 * 109.88388 * 59.55962 * 10 9 7 37 37 H 1.08994 * 109.47351 * 173.69147 * 13 11 10 38 38 H 1.09000 * 109.46961 * 293.69374 * 13 11 10 39 39 H 1.09000 * 109.46868 * 53.68715 * 13 11 10 40 40 H 0.97007 * 119.99951 * 341.35199 * 16 14 11 41 41 H 0.96994 * 120.00217 * 179.97438 * 20 19 17 42 42 H 1.09000 * 110.36817 * 322.92912 * 25 9 7 43 43 H 1.08999 * 110.36917 * 85.14442 * 25 9 7 44 44 H 1.09009 * 110.81264 * 294.02272 * 26 5 4 45 45 H 1.09001 * 110.48586 * 37.58277 * 27 26 5 46 46 H 1.09001 * 110.48920 * 274.93758 * 27 26 5 47 47 H 1.09000 * 110.02765 * 95.67248 * 28 27 26 48 48 H 1.08987 * 110.03544 * 217.10712 * 28 27 26 49 49 H 1.08995 * 110.03229 * 119.28272 * 29 28 27 50 50 H 1.09003 * 110.02598 * 240.71465 * 29 28 27 51 51 H 1.08997 * 110.48387 * 142.29158 * 30 29 28 52 52 H 1.08999 * 110.49037 * 264.80802 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0000 6 1 4.0093 -2.1948 0.0010 7 6 4.1478 -0.4575 -1.2312 8 8 3.5670 0.5236 -1.6447 9 7 5.2421 -0.9131 -1.8726 10 6 5.8998 -0.2607 -3.0142 11 6 7.1215 -1.1241 -3.3937 12 1 6.8750 -1.8009 -4.2118 13 6 8.3169 -0.2437 -3.7634 14 6 7.4065 -1.9181 -2.0914 15 1 7.9964 -1.3245 -1.3931 16 7 8.0699 -3.1904 -2.3866 17 6 8.7436 -3.8568 -1.3981 18 1 8.7856 -3.4446 -0.4008 19 6 9.3727 -5.0622 -1.6781 20 7 9.3211 -5.5648 -2.8934 21 14 10.2924 -5.9709 -0.3298 22 1 9.3539 -6.3033 0.7721 23 1 10.8702 -7.2226 -0.8817 24 1 11.3835 -5.1096 0.1924 25 6 5.9740 -2.1514 -1.5497 26 6 4.1564 -0.4451 1.2486 27 6 3.6034 -1.1116 2.5327 28 6 4.6201 -0.7260 3.6270 29 6 5.9449 -0.4180 2.9073 30 6 5.6871 -0.6277 1.4009 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 1.6960 -2.0073 0.0005 35 1 5.2093 -0.2017 -3.8556 36 1 6.2285 0.7392 -2.7309 37 1 9.1954 -0.8700 -3.9181 38 1 8.0952 0.3039 -4.6794 39 1 8.5115 0.4624 -2.9561 40 1 8.0319 -3.5609 -3.2824 41 1 9.7610 -6.4068 -3.0891 42 1 5.9971 -2.3082 -0.4713 43 1 5.5131 -3.0051 -2.0466 44 1 3.8944 0.6126 1.2188 45 1 3.5634 -2.1943 2.4136 46 1 2.6163 -0.7165 2.7728 47 1 4.2733 0.1565 4.1645 48 1 4.7558 -1.5563 4.3198 49 1 6.2409 0.6140 3.0957 50 1 6.7235 -1.0990 3.2509 51 1 6.2205 0.1207 0.8148 52 1 5.9859 -1.6315 1.0988 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215106328.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:16 Heat of formation + Delta-G solvation = -66.628053 kcal Electronic energy + Delta-G solvation = -31618.720996 eV Core-core repulsion = 27617.899669 eV Total energy + Delta-G solvation = -4000.821327 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.70841 -39.04764 -37.84218 -37.20205 -34.41671 -34.05344 -32.51702 -31.06531 -30.69288 -28.99998 -28.56960 -27.51636 -26.72613 -24.77677 -23.90441 -21.67585 -21.06390 -20.53219 -20.05936 -19.78782 -18.53825 -17.61382 -17.18483 -16.45331 -16.36670 -15.78951 -15.63865 -15.35312 -14.65203 -14.50791 -14.18698 -13.88245 -13.66178 -13.56471 -13.38483 -13.06119 -12.97545 -12.93120 -12.74621 -12.57106 -12.33920 -12.05657 -11.84452 -11.72147 -11.36829 -11.18050 -11.15818 -11.10724 -11.03390 -10.99572 -10.77375 -10.65885 -10.61999 -10.41911 -10.26880 -10.03697 -9.92201 -9.77350 -9.45727 -9.04818 -8.68287 -8.23352 -7.11497 -5.88360 -3.19108 2.66600 2.88409 3.12628 3.36638 3.41942 3.42757 3.50955 4.45962 4.49917 4.58123 4.59809 4.79216 4.89736 4.99114 5.07613 5.10915 5.15096 5.22343 5.27500 5.34340 5.41210 5.51972 5.53065 5.60872 5.64175 5.64569 5.67524 5.70070 5.78403 5.83790 5.86604 5.92596 5.94578 6.02095 6.09672 6.15669 6.23700 6.24763 6.28838 6.34622 6.41837 6.45318 6.51269 6.57657 6.65926 6.86963 7.51047 7.59431 7.87410 8.28918 8.34097 8.55704 9.41146 9.95155 10.30147 11.33510 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011395 B = 0.003773 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.644415 B = 7418.638591 C = 8695.963442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.506 3.494 3 O -0.502 6.502 4 N -0.725 5.725 5 C 0.145 3.855 6 H 0.104 0.896 7 C 0.513 3.487 8 O -0.517 6.517 9 N -0.614 5.614 10 C 0.119 3.881 11 C -0.113 4.113 12 H 0.083 0.917 13 C -0.134 4.134 14 C 0.179 3.821 15 H 0.065 0.935 16 N -0.711 5.711 17 C -0.248 4.248 18 H 0.072 0.928 19 C -0.007 4.007 20 N -0.929 5.929 21 Si 0.906 3.094 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.066 3.934 26 C -0.097 4.097 27 C -0.109 4.109 28 C -0.123 4.123 29 C -0.122 4.122 30 C -0.123 4.123 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.402 0.598 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.387 0.613 41 H 0.257 0.743 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.100 0.900 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.063 0.937 49 H 0.061 0.939 50 H 0.066 0.934 51 H 0.067 0.933 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.870 7.897 7.580 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.292 3.708 3 O -0.374 6.374 4 N -0.379 5.379 5 C 0.036 3.964 6 H 0.122 0.878 7 C 0.299 3.701 8 O -0.391 6.391 9 N -0.350 5.350 10 C -0.004 4.004 11 C -0.133 4.133 12 H 0.101 0.899 13 C -0.192 4.192 14 C 0.067 3.933 15 H 0.083 0.917 16 N -0.351 5.351 17 C -0.379 4.379 18 H 0.090 0.910 19 C -0.203 4.203 20 N -0.577 5.577 21 Si 0.737 3.263 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.211 1.211 25 C -0.060 4.060 26 C -0.117 4.117 27 C -0.147 4.147 28 C -0.161 4.161 29 C -0.160 4.160 30 C -0.161 4.161 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.236 0.764 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.221 0.779 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.118 0.882 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.085 0.915 51 H 0.086 0.914 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.718 9.170 7.534 18.139 hybrid contribution 0.264 -1.355 0.334 1.421 sum -13.454 7.814 7.868 17.435 Atomic orbital electron populations 1.21820 0.92340 1.03717 1.04927 1.20673 0.90154 0.83844 0.76170 1.90771 1.69863 1.30920 1.45853 1.45847 1.05460 1.09053 1.77531 1.20900 0.81276 1.00755 0.93457 0.87808 1.20523 0.79791 0.85092 0.84684 1.90772 1.56014 1.26056 1.66244 1.48560 1.28160 1.25416 1.32858 1.21915 0.93652 0.96339 0.88483 1.22474 0.94006 0.97304 0.99517 0.89879 1.21664 0.97917 0.99114 1.00484 1.21331 0.90043 0.88531 0.93420 0.91727 1.42292 1.60946 1.20350 1.11474 1.19175 1.25779 1.01647 0.91261 0.91049 1.24744 1.00994 0.98061 0.96541 1.69642 1.48240 1.21031 1.18749 0.86295 0.79792 0.79191 0.81045 1.21160 1.21673 1.21146 1.23633 0.95689 0.85545 1.01125 1.22438 0.95472 1.01847 0.91907 1.22291 0.98296 1.00125 0.93971 1.22108 0.95232 1.00978 0.97740 1.22090 0.97411 1.01485 0.94994 1.22535 0.94588 1.02580 0.96390 0.90976 0.89162 0.89050 0.76407 0.92281 0.91888 0.91369 0.93234 0.92902 0.77871 0.93289 0.90940 0.91437 0.88167 0.91575 0.92045 0.92130 0.91848 0.92019 0.91524 0.91450 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.39 36.01 0.37 -1.00 16 2 C 0.51 6.49 6.95 -10.99 -0.08 6.41 16 3 O -0.50 -8.90 12.60 -18.83 -0.24 -9.13 16 4 N -0.72 -7.98 4.83 -54.93 -0.27 -8.25 16 5 C 0.14 1.89 2.22 -69.08 -0.15 1.74 16 6 H 0.10 1.23 6.50 -51.93 -0.34 0.89 16 7 C 0.51 8.52 6.55 -10.98 -0.07 8.45 16 8 O -0.52 -10.45 13.73 -18.83 -0.26 -10.71 16 9 N -0.61 -9.79 3.33 -170.51 -0.57 -10.36 16 10 C 0.12 1.85 6.48 -3.06 -0.02 1.83 16 11 C -0.11 -1.77 3.16 -88.78 -0.28 -2.06 16 12 H 0.08 1.34 7.99 -51.93 -0.42 0.93 16 13 C -0.13 -1.92 9.16 37.16 0.34 -1.58 16 14 C 0.18 3.23 3.14 -65.78 -0.21 3.03 16 15 H 0.06 1.21 8.03 -51.93 -0.42 0.79 16 16 N -0.71 -16.07 5.28 -51.35 -0.27 -16.34 16 17 C -0.25 -6.28 9.98 -15.06 -0.15 -6.43 16 18 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 19 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 20 N -0.93 -26.40 13.06 55.49 0.72 -25.67 16 21 Si 0.91 21.10 29.55 -169.99 -5.02 16.08 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.07 1.07 6.02 -2.52 -0.02 1.06 16 26 C -0.10 -1.24 2.06 -88.62 -0.18 -1.42 16 27 C -0.11 -1.13 5.87 -25.08 -0.15 -1.28 16 28 C -0.12 -1.23 6.80 -25.61 -0.17 -1.41 16 29 C -0.12 -1.36 6.80 -25.61 -0.17 -1.54 16 30 C -0.12 -1.57 5.58 -25.06 -0.14 -1.71 16 31 H 0.07 0.38 7.91 -51.93 -0.41 -0.03 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.40 3.01 8.67 -40.82 -0.35 2.65 16 35 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 36 H 0.06 0.98 7.77 -51.93 -0.40 0.58 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.72 8.07 -51.93 -0.42 0.30 16 40 H 0.39 9.43 7.71 -40.82 -0.31 9.11 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.07 1.13 4.39 -51.93 -0.23 0.90 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.10 1.59 6.46 -51.92 -0.34 1.26 16 45 H 0.07 0.63 8.05 -51.93 -0.42 0.21 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.06 0.58 8.14 -51.94 -0.42 0.16 16 49 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 52 H 0.08 1.00 5.62 -51.93 -0.29 0.70 16 LS Contribution 401.37 15.07 6.05 6.05 Total: -1.00 -32.63 401.37 -9.99 -42.62 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -8.96 Total: 11.91 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -1.17 Total: 3.81 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -0.38 Total: -60.62 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.50 Total: -19.84 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.63 -9.99 -42.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215106328.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.008 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds