Wall clock time and date at job start Tue Mar 31 2020 20:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.78437 * 2 1 4 4 C 1.54325 * 110.72304 * 236.75391 * 2 1 3 5 5 N 1.47018 * 107.40412 * 219.52316 * 4 2 1 6 6 C 1.34777 * 125.64981 * 178.82520 * 5 4 2 7 7 O 1.21280 * 119.99909 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00100 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.47067 * 180.02562 * 8 6 5 10 10 C 1.50696 * 109.47302 * 180.02562 * 9 8 6 11 11 O 1.21280 * 119.99755 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00112 * 180.02562 * 10 9 8 13 13 C 1.46507 * 119.99838 * 179.97438 * 12 10 9 14 14 C 1.54262 * 110.03152 * 272.90628 * 13 12 10 15 15 C 1.54970 * 104.15834 * 217.13315 * 14 13 12 16 16 C 1.54892 * 102.77415 * 37.89280 * 15 14 13 17 17 C 1.53869 * 110.02923 * 155.68704 * 13 12 10 18 18 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 19 19 C 1.54914 * 104.82992 * 24.12623 * 18 5 4 20 20 H 1.09000 * 111.00339 * 81.07133 * 19 18 5 21 21 N 1.46505 * 111.00202 * 204.91694 * 19 18 5 22 22 C 1.36935 * 120.00217 * 273.54861 * 21 19 18 23 23 H 1.08006 * 119.99642 * 359.97438 * 22 21 19 24 24 C 1.38808 * 120.00007 * 180.02562 * 22 21 19 25 25 N 1.31620 * 120.00356 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99913 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47566 * 89.99661 * 26 24 22 28 28 H 1.48503 * 109.47218 * 210.00283 * 26 24 22 29 29 H 1.48502 * 109.47082 * 329.99719 * 26 24 22 30 30 H 1.08999 * 109.47083 * 181.78943 * 1 2 3 31 31 H 1.09002 * 109.47293 * 301.78952 * 1 2 3 32 32 H 1.09000 * 109.47062 * 61.79046 * 1 2 3 33 33 H 1.09002 * 109.88192 * 100.02756 * 4 2 1 34 34 H 1.09000 * 109.88128 * 339.01609 * 4 2 1 35 35 H 1.08996 * 109.47275 * 300.00392 * 8 6 5 36 36 H 1.09002 * 109.46941 * 60.00490 * 8 6 5 37 37 H 1.08996 * 109.47291 * 300.00257 * 9 8 6 38 38 H 1.09002 * 109.46942 * 60.00365 * 9 8 6 39 39 H 0.96991 * 120.00451 * 359.97438 * 12 10 9 40 40 H 1.08996 * 110.01383 * 34.30146 * 13 12 10 41 41 H 1.08995 * 110.48832 * 335.78271 * 14 13 12 42 42 H 1.09001 * 110.48432 * 98.43074 * 14 13 12 43 43 H 1.08999 * 110.72104 * 279.57750 * 15 14 13 44 44 H 1.09001 * 110.92216 * 156.29492 * 15 14 13 45 45 H 1.09000 * 110.48367 * 203.40337 * 16 15 14 46 46 H 1.08998 * 110.59952 * 80.81435 * 16 15 14 47 47 H 1.09002 * 110.03449 * 238.57263 * 17 13 12 48 48 H 1.09000 * 110.03773 * 359.95382 * 17 13 12 49 49 H 1.08999 * 110.36956 * 142.96999 * 18 5 4 50 50 H 1.09001 * 110.36709 * 265.18192 * 18 5 4 51 51 H 0.96998 * 119.99743 * 93.55096 * 21 19 18 52 52 H 0.96989 * 120.00348 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2438 -1.5535 -0.7414 6 6 3.9877 -2.3885 -1.4937 7 8 3.7119 -2.5604 -2.6621 8 6 5.1630 -3.1076 -0.8831 9 6 5.8310 -3.9850 -1.9437 10 6 7.0059 -4.7046 -1.3332 11 8 7.2820 -4.5323 -0.1648 12 7 7.7504 -5.5388 -2.0857 13 6 8.8929 -6.2380 -1.4921 14 6 10.1556 -5.3562 -1.5797 15 6 11.3002 -6.3605 -1.8674 16 6 10.6321 -7.3749 -2.8286 17 6 9.1956 -7.5211 -2.2855 18 6 3.4656 -1.2541 0.6849 19 6 2.0831 -0.7972 1.2139 20 1 1.4480 -1.6542 1.4382 21 7 2.2294 0.0667 2.3880 22 6 2.3264 -0.4860 3.6370 23 1 2.2947 -1.5590 3.7567 24 6 2.4645 0.3326 4.7495 25 7 2.5027 1.6401 4.6038 26 14 2.5976 -0.4215 6.4533 27 1 4.0255 -0.6759 6.7720 28 1 2.0259 0.5141 7.4548 29 1 1.8471 -1.7025 6.4877 30 1 -0.3633 -1.0272 0.0321 31 1 -0.3634 0.5414 0.8735 32 1 -0.3633 0.4858 -0.9056 33 1 2.3741 -0.1026 -1.9977 34 1 1.3121 -1.4741 -1.5791 35 1 5.8817 -2.3780 -0.5104 36 1 4.8185 -3.7322 -0.0589 37 1 5.1125 -4.7146 -2.3169 38 1 6.1756 -3.3601 -2.7677 39 1 7.5299 -5.6764 -3.0201 40 1 8.6804 -6.4837 -0.4517 41 1 10.0640 -4.6386 -2.3949 42 1 10.3275 -4.8413 -0.6344 43 1 11.6216 -6.8523 -0.9493 44 1 12.1406 -5.8643 -2.3527 45 1 11.1522 -8.3322 -2.7945 46 1 10.6173 -6.9859 -3.8467 47 1 9.1309 -8.3896 -1.6299 48 1 8.4921 -7.6242 -3.1116 49 1 3.7975 -2.1479 1.2131 50 1 4.1987 -0.4550 0.7952 51 1 2.2575 1.0303 2.2805 52 1 2.5996 2.2121 5.3810 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216061963.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:58 Heat of formation + Delta-G solvation = -82.417180 kcal Electronic energy + Delta-G solvation = -29089.918072 eV Core-core repulsion = 25088.412077 eV Total energy + Delta-G solvation = -4001.505995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.34297 -39.71529 -38.08838 -37.51658 -34.07316 -33.90351 -33.00719 -32.27089 -30.70938 -29.13816 -28.35298 -27.50724 -26.70646 -24.59677 -23.85932 -21.54791 -21.15512 -20.67979 -20.56549 -19.88180 -18.88399 -17.62876 -17.17484 -16.70755 -16.29044 -16.26585 -15.76436 -15.54740 -14.96386 -14.87954 -14.45580 -14.02947 -13.80706 -13.68749 -13.56984 -13.16661 -13.09921 -12.98522 -12.70450 -12.56217 -12.27297 -12.10456 -11.86220 -11.81673 -11.63557 -11.58577 -11.45864 -11.24241 -11.14261 -11.10397 -11.04093 -10.99419 -10.72516 -10.60731 -10.24546 -9.95914 -9.92382 -9.80897 -9.64370 -9.29285 -9.01206 -8.34020 -7.08649 -5.84965 -3.15726 2.50055 2.81940 2.85116 3.33015 3.40934 3.46933 3.47556 4.12014 4.22376 4.44394 4.49414 4.54495 4.78301 4.90662 4.99128 4.99762 5.07120 5.10826 5.14008 5.15090 5.19408 5.22701 5.24830 5.38292 5.49527 5.51202 5.54869 5.64787 5.65112 5.74578 5.77697 5.79171 5.83499 5.84756 5.90599 5.92420 5.93368 6.02032 6.21020 6.25882 6.30458 6.38364 6.47046 6.53415 6.60795 6.87436 7.26035 7.64065 7.79475 8.05977 8.31612 8.35298 9.44733 9.97958 10.32956 11.36945 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011220 B = 0.002280 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.026484 B =12277.943222 C =14346.266956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.084 0.916 4 C 0.116 3.884 5 N -0.612 5.612 6 C 0.526 3.474 7 O -0.561 6.561 8 C -0.121 4.121 9 C -0.123 4.123 10 C 0.513 3.487 11 O -0.535 6.535 12 N -0.729 5.729 13 C 0.139 3.861 14 C -0.136 4.136 15 C -0.125 4.125 16 C -0.124 4.124 17 C -0.132 4.132 18 C 0.071 3.929 19 C 0.177 3.823 20 H 0.065 0.935 21 N -0.710 5.710 22 C -0.247 4.247 23 H 0.072 0.928 24 C -0.008 4.008 25 N -0.929 5.929 26 Si 0.907 3.093 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.400 0.600 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.071 0.929 51 H 0.387 0.613 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.165 -14.951 -17.650 25.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 H 0.103 0.897 4 C -0.007 4.007 5 N -0.345 5.345 6 C 0.315 3.685 7 O -0.441 6.441 8 C -0.161 4.161 9 C -0.163 4.163 10 C 0.300 3.700 11 O -0.411 6.411 12 N -0.382 5.382 13 C 0.034 3.966 14 C -0.174 4.174 15 C -0.163 4.163 16 C -0.162 4.162 17 C -0.170 4.170 18 C -0.055 4.055 19 C 0.065 3.935 20 H 0.083 0.917 21 N -0.350 5.350 22 C -0.378 4.378 23 H 0.090 0.910 24 C -0.205 4.205 25 N -0.577 5.577 26 Si 0.738 3.262 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.235 0.765 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.093 0.907 48 H 0.090 0.910 49 H 0.090 0.910 50 H 0.090 0.910 51 H 0.222 0.778 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.235 -15.044 -17.247 25.495 hybrid contribution 0.135 -0.054 0.555 0.574 sum 11.370 -15.099 -16.692 25.216 Atomic orbital electron populations 1.21653 0.93921 1.01778 1.01757 1.22521 0.96435 0.99809 0.94574 0.89750 1.21955 0.87532 0.94322 0.96840 1.48534 1.29780 1.43517 1.12623 1.20267 0.83513 0.78865 0.85807 1.90651 1.71650 1.65169 1.16616 1.21320 0.96011 0.99790 0.98960 1.21364 0.95635 0.99860 0.99449 1.20817 0.83622 0.78954 0.86654 1.90739 1.70705 1.63080 1.16593 1.46214 1.31002 1.46719 1.14247 1.21643 0.85293 0.91120 0.98556 1.22813 0.94063 0.98004 1.02551 1.22496 0.97566 0.96719 0.99509 1.22356 0.95093 0.99553 0.99189 1.22443 0.97415 0.97170 0.99951 1.23564 1.02529 1.01051 0.78370 1.21418 0.91775 0.93687 0.86656 0.91718 1.42288 1.86850 1.05158 1.00736 1.19229 1.43027 0.91908 0.83638 0.90975 1.24758 1.02337 0.95347 0.98024 1.69653 1.56529 1.02091 1.29409 0.86192 0.77757 0.77987 0.84247 1.21554 1.21747 1.20667 0.92845 0.91419 0.93201 0.92067 0.91694 0.88151 0.88111 0.88180 0.88188 0.76547 0.89087 0.91149 0.90939 0.91239 0.91334 0.91424 0.91477 0.90719 0.91032 0.90999 0.91046 0.77845 0.93355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 9.14 37.15 0.34 -1.54 16 2 C -0.11 -1.78 3.19 -88.65 -0.28 -2.06 16 3 H 0.08 1.36 8.00 -51.93 -0.42 0.94 16 4 C 0.12 1.75 6.46 -3.07 -0.02 1.73 16 5 N -0.61 -9.73 3.33 -170.52 -0.57 -10.30 16 6 C 0.53 8.19 7.85 -10.98 -0.09 8.10 16 7 O -0.56 -9.84 16.31 5.56 0.09 -9.75 16 8 C -0.12 -1.59 4.00 -27.88 -0.11 -1.70 16 9 C -0.12 -1.31 4.99 -27.89 -0.14 -1.45 16 10 C 0.51 5.84 7.82 -10.99 -0.09 5.75 16 11 O -0.54 -8.26 15.65 5.56 0.09 -8.17 16 12 N -0.73 -6.01 5.04 -52.72 -0.27 -6.27 16 13 C 0.14 1.12 3.23 -66.81 -0.22 0.91 16 14 C -0.14 -1.08 6.54 -25.03 -0.16 -1.24 16 15 C -0.12 -0.75 6.91 -24.69 -0.17 -0.92 16 16 C -0.12 -0.63 6.83 -25.07 -0.17 -0.80 16 17 C -0.13 -0.75 6.57 -25.61 -0.17 -0.91 16 18 C 0.07 1.22 6.39 -2.53 -0.02 1.20 16 19 C 0.18 3.30 3.14 -65.64 -0.21 3.10 16 20 H 0.06 1.24 8.03 -51.93 -0.42 0.83 16 21 N -0.71 -16.62 5.28 -51.21 -0.27 -16.89 16 22 C -0.25 -6.51 9.98 -15.06 -0.15 -6.66 16 23 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 24 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 25 N -0.93 -27.07 13.06 55.49 0.72 -26.35 16 26 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 30 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.95 7.82 -51.93 -0.41 0.54 16 35 H 0.10 1.35 8.10 -51.93 -0.42 0.93 16 36 H 0.10 1.35 7.80 -51.93 -0.41 0.95 16 37 H 0.10 0.98 8.10 -51.93 -0.42 0.56 16 38 H 0.10 0.99 8.10 -51.93 -0.42 0.57 16 39 H 0.40 2.23 8.31 -40.82 -0.34 1.89 16 40 H 0.09 0.93 7.59 -51.93 -0.39 0.53 16 41 H 0.07 0.57 8.05 -51.93 -0.42 0.15 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.34 7.61 -51.93 -0.40 -0.05 16 49 H 0.07 1.23 7.48 -51.93 -0.39 0.84 16 50 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 51 H 0.39 9.66 7.72 -40.82 -0.31 9.35 16 52 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 416.45 15.07 6.28 6.28 Total: -1.00 -32.05 416.45 -10.04 -42.10 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -9.35 Total: 9.36 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -1.74 Total: 3.16 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.38 Total: -59.81 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.18 Total: -17.92 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.05 -10.04 -42.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216061963.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.319 kcal (2) G-P(sol) polarization free energy of solvation -32.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds