Wall clock time and date at job start Tue Mar 31 2020 20:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.78437 * 2 1 4 4 C 1.54325 * 110.72304 * 236.75391 * 2 1 3 5 5 N 1.47018 * 107.40412 * 219.52316 * 4 2 1 6 6 C 1.34777 * 125.64981 * 178.82520 * 5 4 2 7 7 O 1.21280 * 119.99909 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00100 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.47067 * 180.02562 * 8 6 5 10 10 C 1.50696 * 109.47302 * 180.02562 * 9 8 6 11 11 O 1.21280 * 119.99755 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00112 * 180.02562 * 10 9 8 13 13 C 1.46507 * 119.99838 * 179.97438 * 12 10 9 14 14 C 1.54262 * 110.03152 * 272.90628 * 13 12 10 15 15 C 1.54970 * 104.15834 * 217.13315 * 14 13 12 16 16 C 1.54892 * 102.77415 * 37.89280 * 15 14 13 17 17 C 1.53869 * 110.02923 * 155.68704 * 13 12 10 18 18 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 19 19 C 1.54914 * 104.82992 * 24.12623 * 18 5 4 20 20 H 1.09000 * 111.00339 * 81.07133 * 19 18 5 21 21 N 1.46505 * 111.00202 * 204.91694 * 19 18 5 22 22 C 1.36935 * 120.00217 * 273.54861 * 21 19 18 23 23 H 1.08006 * 119.99642 * 359.97438 * 22 21 19 24 24 C 1.38808 * 120.00007 * 180.02562 * 22 21 19 25 25 N 1.31620 * 120.00356 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99913 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47566 * 89.99661 * 26 24 22 28 28 H 1.48503 * 109.47218 * 210.00283 * 26 24 22 29 29 H 1.48502 * 109.47082 * 329.99719 * 26 24 22 30 30 H 1.08999 * 109.47083 * 181.78943 * 1 2 3 31 31 H 1.09002 * 109.47293 * 301.78952 * 1 2 3 32 32 H 1.09000 * 109.47062 * 61.79046 * 1 2 3 33 33 H 1.09002 * 109.88192 * 100.02756 * 4 2 1 34 34 H 1.09000 * 109.88128 * 339.01609 * 4 2 1 35 35 H 1.08996 * 109.47275 * 300.00392 * 8 6 5 36 36 H 1.09002 * 109.46941 * 60.00490 * 8 6 5 37 37 H 1.08996 * 109.47291 * 300.00257 * 9 8 6 38 38 H 1.09002 * 109.46942 * 60.00365 * 9 8 6 39 39 H 0.96991 * 120.00451 * 359.97438 * 12 10 9 40 40 H 1.08996 * 110.01383 * 34.30146 * 13 12 10 41 41 H 1.08995 * 110.48832 * 335.78271 * 14 13 12 42 42 H 1.09001 * 110.48432 * 98.43074 * 14 13 12 43 43 H 1.08999 * 110.72104 * 279.57750 * 15 14 13 44 44 H 1.09001 * 110.92216 * 156.29492 * 15 14 13 45 45 H 1.09000 * 110.48367 * 203.40337 * 16 15 14 46 46 H 1.08998 * 110.59952 * 80.81435 * 16 15 14 47 47 H 1.09002 * 110.03449 * 238.57263 * 17 13 12 48 48 H 1.09000 * 110.03773 * 359.95382 * 17 13 12 49 49 H 1.08999 * 110.36956 * 142.96999 * 18 5 4 50 50 H 1.09001 * 110.36709 * 265.18192 * 18 5 4 51 51 H 0.96998 * 119.99743 * 93.55096 * 21 19 18 52 52 H 0.96989 * 120.00348 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2438 -1.5535 -0.7414 6 6 3.9877 -2.3885 -1.4937 7 8 3.7119 -2.5604 -2.6621 8 6 5.1630 -3.1076 -0.8831 9 6 5.8310 -3.9850 -1.9437 10 6 7.0059 -4.7046 -1.3332 11 8 7.2820 -4.5323 -0.1648 12 7 7.7504 -5.5388 -2.0857 13 6 8.8929 -6.2380 -1.4921 14 6 10.1556 -5.3562 -1.5797 15 6 11.3002 -6.3605 -1.8674 16 6 10.6321 -7.3749 -2.8286 17 6 9.1956 -7.5211 -2.2855 18 6 3.4656 -1.2541 0.6849 19 6 2.0831 -0.7972 1.2139 20 1 1.4480 -1.6542 1.4382 21 7 2.2294 0.0667 2.3880 22 6 2.3264 -0.4860 3.6370 23 1 2.2947 -1.5590 3.7567 24 6 2.4645 0.3326 4.7495 25 7 2.5027 1.6401 4.6038 26 14 2.5976 -0.4215 6.4533 27 1 4.0255 -0.6759 6.7720 28 1 2.0259 0.5141 7.4548 29 1 1.8471 -1.7025 6.4877 30 1 -0.3633 -1.0272 0.0321 31 1 -0.3634 0.5414 0.8735 32 1 -0.3633 0.4858 -0.9056 33 1 2.3741 -0.1026 -1.9977 34 1 1.3121 -1.4741 -1.5791 35 1 5.8817 -2.3780 -0.5104 36 1 4.8185 -3.7322 -0.0589 37 1 5.1125 -4.7146 -2.3169 38 1 6.1756 -3.3601 -2.7677 39 1 7.5299 -5.6764 -3.0201 40 1 8.6804 -6.4837 -0.4517 41 1 10.0640 -4.6386 -2.3949 42 1 10.3275 -4.8413 -0.6344 43 1 11.6216 -6.8523 -0.9493 44 1 12.1406 -5.8643 -2.3527 45 1 11.1522 -8.3322 -2.7945 46 1 10.6173 -6.9859 -3.8467 47 1 9.1309 -8.3896 -1.6299 48 1 8.4921 -7.6242 -3.1116 49 1 3.7975 -2.1479 1.2131 50 1 4.1987 -0.4550 0.7952 51 1 2.2575 1.0303 2.2805 52 1 2.5996 2.2121 5.3810 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216061963.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:56 Heat of formation + Delta-G solvation = -102.585819 kcal Electronic energy + Delta-G solvation = -29090.792650 eV Core-core repulsion = 25088.412077 eV Total energy + Delta-G solvation = -4002.380573 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.38280 -40.82636 -39.07139 -38.60878 -35.86479 -34.69925 -34.20373 -33.54228 -32.46915 -29.66159 -29.19483 -29.05145 -27.73539 -25.97722 -25.40927 -22.98911 -21.80570 -21.42468 -21.32090 -21.21444 -20.12268 -19.10550 -18.65977 -17.63611 -17.55176 -17.16042 -16.88776 -16.54021 -16.14761 -16.04021 -15.64197 -15.31413 -15.17147 -14.65842 -14.56179 -14.48321 -14.34696 -14.27019 -14.02372 -13.67291 -13.29711 -13.11459 -13.05414 -12.94228 -12.89137 -12.81647 -12.48506 -12.22950 -12.19511 -12.13541 -12.03212 -11.99678 -11.96889 -11.77247 -11.70345 -11.49192 -11.37810 -11.04674 -10.91583 -10.87835 -10.06929 -9.69135 -9.04057 -7.94568 -5.23922 1.49388 1.50592 1.55386 1.58090 1.60033 1.85676 2.29132 2.57030 3.33988 3.37728 3.57345 3.65682 3.69554 3.77639 3.90029 3.95491 3.99136 4.06139 4.10976 4.18776 4.36981 4.45334 4.47057 4.51705 4.53801 4.56682 4.61336 4.62700 4.70923 4.76174 4.79630 4.87058 4.89230 4.91292 4.94153 5.03587 5.10228 5.13285 5.15792 5.21797 5.22443 5.27163 5.35062 5.44284 5.46238 5.55681 5.60815 6.26620 6.48001 6.53679 7.06865 7.24858 7.34590 8.05855 8.30157 9.28140 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011220 B = 0.002280 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.026484 B =12277.943222 C =14346.266956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.103 4.103 3 H 0.079 0.921 4 C 0.119 3.881 5 N -0.613 5.613 6 C 0.529 3.471 7 O -0.576 6.576 8 C -0.117 4.117 9 C -0.114 4.114 10 C 0.513 3.487 11 O -0.582 6.582 12 N -0.713 5.713 13 C 0.134 3.866 14 C -0.136 4.136 15 C -0.123 4.123 16 C -0.119 4.119 17 C -0.125 4.125 18 C 0.085 3.915 19 C 0.170 3.830 20 H 0.062 0.938 21 N -0.720 5.720 22 C -0.240 4.240 23 H 0.077 0.923 24 C -0.069 4.069 25 N -0.965 5.965 26 Si 0.967 3.033 27 H -0.290 1.290 28 H -0.297 1.297 29 H -0.270 1.270 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.416 0.584 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.048 0.952 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.086 0.914 49 H 0.072 0.928 50 H 0.059 0.941 51 H 0.377 0.623 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.339 -16.836 -19.744 28.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.123 4.123 3 H 0.097 0.903 4 C -0.004 4.004 5 N -0.346 5.346 6 C 0.319 3.681 7 O -0.457 6.457 8 C -0.157 4.157 9 C -0.154 4.154 10 C 0.301 3.699 11 O -0.462 6.462 12 N -0.365 5.365 13 C 0.029 3.971 14 C -0.175 4.175 15 C -0.161 4.161 16 C -0.157 4.157 17 C -0.163 4.163 18 C -0.041 4.041 19 C 0.059 3.941 20 H 0.080 0.920 21 N -0.359 5.359 22 C -0.372 4.372 23 H 0.095 0.905 24 C -0.262 4.262 25 N -0.615 5.615 26 Si 0.796 3.204 27 H -0.217 1.217 28 H -0.224 1.224 29 H -0.195 1.195 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.254 0.746 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.094 0.906 47 H 0.096 0.904 48 H 0.105 0.895 49 H 0.090 0.910 50 H 0.077 0.923 51 H 0.210 0.790 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.411 -16.993 -19.422 28.217 hybrid contribution 0.086 0.492 1.107 1.214 sum 11.497 -16.501 -18.315 27.201 Atomic orbital electron populations 1.21613 0.92518 1.02267 1.02177 1.22434 0.97548 0.99108 0.93194 0.90287 1.21995 0.87428 0.94491 0.96471 1.48550 1.30275 1.43852 1.11942 1.20571 0.83613 0.78409 0.85492 1.90642 1.72165 1.65658 1.17224 1.21288 0.95072 0.99770 0.99550 1.21311 0.95450 0.99856 0.98751 1.20940 0.83847 0.79027 0.86111 1.90726 1.72027 1.64849 1.18637 1.46108 1.30263 1.45332 1.14802 1.21701 0.85084 0.92441 0.97828 1.22780 0.95006 0.98397 1.01323 1.22494 0.97095 0.96502 0.99963 1.22352 0.94388 0.99762 0.99160 1.22417 0.98283 0.95549 1.00085 1.23180 1.01030 1.00580 0.79319 1.21578 0.92641 0.93489 0.86364 0.91958 1.42378 1.87015 1.05141 1.01363 1.19575 1.40654 0.92139 0.84815 0.90485 1.25477 1.03551 0.95794 1.01352 1.69792 1.58761 1.03206 1.29764 0.85242 0.77431 0.77439 0.80260 1.21729 1.22366 1.19450 0.92151 0.93325 0.90605 0.91172 0.90653 0.88740 0.88463 0.86774 0.86931 0.74641 0.91643 0.91100 0.93292 0.91362 0.90567 0.90241 0.90579 0.90384 0.89524 0.90972 0.92272 0.79015 0.94026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 9.14 71.98 0.66 -2.75 16 2 C -0.10 -3.11 3.19 -9.52 -0.03 -3.14 16 3 H 0.08 2.49 8.00 -2.39 -0.02 2.47 16 4 C 0.12 3.33 6.46 86.73 0.56 3.89 16 5 N -0.61 -18.75 3.33 -811.78 -2.70 -21.45 16 6 C 0.53 15.69 7.85 87.66 0.69 16.38 16 7 O -0.58 -19.00 16.31 -3.03 -0.05 -19.05 16 8 C -0.12 -2.98 4.00 29.85 0.12 -2.86 16 9 C -0.11 -2.25 4.99 29.85 0.15 -2.10 16 10 C 0.51 11.36 7.82 87.66 0.69 12.05 16 11 O -0.58 -18.35 15.65 -3.03 -0.05 -18.40 16 12 N -0.71 -10.82 5.04 -439.11 -2.21 -13.03 16 13 C 0.13 2.09 3.23 45.71 0.15 2.24 16 14 C -0.14 -2.13 6.54 31.70 0.21 -1.93 16 15 C -0.12 -1.33 6.91 31.91 0.22 -1.10 16 16 C -0.12 -0.92 6.83 31.67 0.22 -0.70 16 17 C -0.13 -1.16 6.57 31.32 0.21 -0.95 16 18 C 0.08 2.89 6.39 86.86 0.55 3.45 16 19 C 0.17 6.27 3.14 46.47 0.15 6.41 16 20 H 0.06 2.35 8.03 -2.39 -0.02 2.33 16 21 N -0.72 -34.00 5.28 -315.95 -1.67 -35.67 16 22 C -0.24 -12.70 9.98 84.03 0.84 -11.86 16 23 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 24 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 25 N -0.97 -57.34 13.06 21.65 0.28 -57.05 16 26 Si 0.97 45.35 29.55 68.60 2.03 47.38 16 27 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 28 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 29 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 30 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.08 1.99 7.82 -2.39 -0.02 1.98 16 35 H 0.09 2.55 8.10 -2.39 -0.02 2.53 16 36 H 0.10 2.57 7.80 -2.39 -0.02 2.55 16 37 H 0.11 1.97 8.10 -2.39 -0.02 1.95 16 38 H 0.11 1.98 8.10 -2.39 -0.02 1.96 16 39 H 0.42 3.64 8.31 -92.72 -0.77 2.87 16 40 H 0.07 1.38 7.59 -2.39 -0.02 1.36 16 41 H 0.07 1.09 8.05 -2.39 -0.02 1.07 16 42 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.09 0.56 7.61 -2.39 -0.02 0.54 16 49 H 0.07 2.45 7.48 -2.39 -0.02 2.43 16 50 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 51 H 0.38 19.21 7.72 -92.71 -0.72 18.50 16 52 H 0.25 14.57 8.31 -92.72 -0.77 13.80 16 Total: -1.00 -69.21 416.45 0.89 -68.32 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: -0.58 Total: 35.31 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 5.83 Total: 13.64 kcal Atomic # 7 Polarization: -120.90 SS G_CDS: -6.30 Total: -127.20 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -0.10 Total: -37.45 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -69.21 0.89 -68.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216061963.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.265 kcal (2) G-P(sol) polarization free energy of solvation -69.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds