Wall clock time and date at job start Tue Mar 31 2020 20:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47662 * 2 1 4 4 C 1.50706 * 109.47291 * 239.99923 * 2 1 3 5 5 O 1.21277 * 119.99949 * 240.00569 * 4 2 1 6 6 N 1.34774 * 119.99740 * 60.00124 * 4 2 1 7 7 C 1.46496 * 120.00256 * 180.02562 * 6 4 2 8 8 H 1.09001 * 109.47059 * 35.00189 * 7 6 4 9 9 C 1.52997 * 109.46941 * 275.00029 * 7 6 4 10 10 C 1.53006 * 109.47164 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47127 * 59.99836 * 10 9 7 12 12 C 1.53000 * 109.47060 * 300.00449 * 11 10 9 13 13 C 1.52996 * 109.47328 * 60.00126 * 12 11 10 14 14 H 1.08992 * 109.47554 * 59.99639 * 13 12 11 15 15 N 1.46899 * 109.46973 * 179.97438 * 13 12 11 16 16 C 1.46897 * 111.00101 * 274.99799 * 15 13 12 17 17 C 1.50700 * 109.47458 * 180.02562 * 16 15 13 18 18 O 1.21294 * 119.99679 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00407 * 179.97438 * 17 16 15 20 20 C 1.37098 * 120.00424 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99840 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00317 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99958 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00116 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47097 * 59.99883 * 24 22 20 26 26 H 1.48501 * 109.47133 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46847 * 300.00126 * 24 22 20 28 28 C 1.53005 * 109.47199 * 120.00309 * 2 1 3 29 29 C 1.53001 * 117.50011 * 248.74718 * 28 2 1 30 30 C 1.52994 * 117.50079 * 180.08528 * 28 2 1 31 31 H 1.08990 * 109.47318 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46901 * 300.00344 * 1 2 3 33 33 H 1.08999 * 109.47240 * 59.99416 * 1 2 3 34 34 H 0.97011 * 119.99657 * 0.02562 * 6 4 2 35 35 H 1.09001 * 109.47375 * 299.99966 * 9 7 6 36 36 H 1.09000 * 109.47140 * 59.99984 * 9 7 6 37 37 H 1.08998 * 109.46505 * 299.99708 * 10 9 7 38 38 H 1.08996 * 109.46884 * 180.02562 * 10 9 7 39 39 H 1.09002 * 109.47153 * 180.02562 * 11 10 9 40 40 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 41 41 H 1.09004 * 109.46724 * 180.02562 * 12 11 10 42 42 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 43 43 H 1.00901 * 110.99898 * 151.04383 * 15 13 12 44 44 H 1.09001 * 109.46918 * 300.00193 * 16 15 13 45 45 H 1.08998 * 109.47043 * 59.99909 * 16 15 13 46 46 H 0.97001 * 120.00021 * 359.97438 * 19 17 16 47 47 H 0.96995 * 120.00520 * 179.97438 * 23 22 20 48 48 H 1.09003 * 115.54949 * 34.41295 * 28 2 1 49 49 H 1.08999 * 117.49703 * 359.97438 * 29 28 2 50 50 H 1.08995 * 117.49830 * 145.01672 * 29 28 2 51 51 H 1.09007 * 117.49983 * 214.97868 * 30 28 2 52 52 H 1.09002 * 117.50132 * 359.97205 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7295 -1.6965 -1.1192 6 7 1.7068 -0.2500 -2.4546 7 6 2.1946 -0.9408 -3.6507 8 1 2.2308 -2.0136 -3.4614 9 6 3.5973 -0.4359 -3.9948 10 6 4.1071 -1.1579 -5.2438 11 6 3.1632 -0.8790 -6.4151 12 6 1.7604 -1.3838 -6.0710 13 6 1.2507 -0.6618 -4.8221 14 1 1.2144 0.4109 -5.0119 15 7 -0.0964 -1.1461 -4.4921 16 6 -1.1192 -0.4172 -5.2541 17 6 -2.4848 -0.9398 -4.8894 18 8 -2.5951 -1.8321 -4.0753 19 7 -3.5835 -0.4159 -5.4679 20 6 -4.8258 -0.8917 -5.1366 21 1 -4.9241 -1.6862 -4.4117 22 6 -5.9585 -0.3518 -5.7335 23 7 -5.8390 0.6146 -6.6159 24 14 -7.6513 -0.9996 -5.2815 25 1 -7.8841 -0.8045 -3.8279 26 1 -8.6852 -0.2624 -6.0513 27 1 -7.7301 -2.4467 -5.6055 28 6 2.0400 -0.7213 1.2492 29 6 2.7393 0.1229 2.3165 30 6 3.5549 -0.8264 1.4353 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.1494 0.5390 -2.5435 35 1 3.5611 0.6369 -4.1842 36 1 4.2699 -0.6351 -3.1605 37 1 4.1435 -2.2306 -5.0538 38 1 5.1066 -0.7985 -5.4885 39 1 3.5261 -1.3937 -7.3047 40 1 3.1269 0.1937 -6.6049 41 1 1.0881 -1.1855 -6.9057 42 1 1.7967 -2.4565 -5.8811 43 1 -0.2706 -1.0825 -3.5003 44 1 -1.0615 0.6449 -5.0159 45 1 -0.9480 -0.5601 -6.3210 46 1 -3.4953 0.2980 -6.1188 47 1 -6.6296 0.9912 -7.0329 48 1 1.4318 -1.5595 1.5894 49 1 2.8364 1.1922 2.1285 50 1 2.5915 -0.1600 3.3587 51 1 3.9435 -1.7337 1.8982 52 1 4.1884 -0.3821 0.6675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225533803.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:33 Heat of formation + Delta-G solvation = -70.081634 kcal Electronic energy + Delta-G solvation = -30202.337961 eV Core-core repulsion = 26201.366875 eV Total energy + Delta-G solvation = -4000.971086 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.51992 -38.98312 -38.03565 -36.99817 -34.71810 -34.27938 -33.74438 -32.49774 -31.24125 -29.89321 -29.00622 -26.14880 -24.94416 -24.07251 -22.99773 -22.46493 -21.59731 -21.20001 -20.37124 -19.57595 -19.20669 -17.92226 -17.34580 -16.56031 -16.08052 -15.59503 -15.24054 -15.15524 -14.95056 -14.68257 -14.50635 -14.36472 -14.01351 -13.93807 -13.83020 -13.47717 -13.03061 -12.77136 -12.64350 -12.53272 -12.35020 -12.06081 -11.92469 -11.77901 -11.69407 -11.53449 -11.36539 -11.24502 -11.20573 -11.02540 -10.84423 -10.75867 -10.55680 -10.45436 -10.29343 -10.22182 -10.21725 -9.58739 -9.51340 -9.11390 -8.46149 -8.09636 -7.97448 -6.43175 -3.84018 2.62119 2.98444 3.19059 3.24831 3.29314 3.74744 3.88870 4.01794 4.24705 4.35066 4.49556 4.60561 4.69463 4.79154 4.86494 4.91726 5.00691 5.02208 5.08014 5.10901 5.20363 5.24026 5.27003 5.33441 5.37356 5.38868 5.47381 5.61480 5.65065 5.71101 5.74281 5.75526 5.80097 5.89155 5.93084 5.94001 5.98920 6.00204 6.02404 6.06131 6.13832 6.20067 6.23400 6.34994 6.45814 7.20618 7.40492 7.53680 7.63895 8.04704 8.19340 8.59814 9.16510 9.52678 10.04313 10.74500 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010091 B = 0.002951 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.984655 B = 9486.319316 C =11825.850446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 H 0.094 0.906 4 C 0.521 3.479 5 O -0.529 6.529 6 N -0.730 5.730 7 C 0.145 3.855 8 H 0.098 0.902 9 C -0.124 4.124 10 C -0.116 4.116 11 C -0.121 4.121 12 C -0.106 4.106 13 C 0.083 3.917 14 H 0.045 0.955 15 N -0.664 5.664 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.581 6.581 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 C -0.133 4.133 29 C -0.185 4.185 30 C -0.156 4.156 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.397 0.603 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.351 0.649 44 H 0.041 0.959 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.108 0.892 49 H 0.092 0.908 50 H 0.093 0.907 51 H 0.092 0.908 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.640 4.571 7.435 21.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 H 0.112 0.888 4 C 0.307 3.693 5 O -0.404 6.404 6 N -0.382 5.382 7 C 0.040 3.960 8 H 0.116 0.884 9 C -0.163 4.163 10 C -0.155 4.155 11 C -0.159 4.159 12 C -0.145 4.145 13 C -0.028 4.028 14 H 0.063 0.937 15 N -0.298 5.298 16 C -0.082 4.082 17 C 0.225 3.775 18 O -0.465 6.465 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.151 4.151 29 C -0.222 4.222 30 C -0.193 4.193 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.231 0.769 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.172 0.828 44 H 0.059 0.941 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.126 0.874 49 H 0.110 0.890 50 H 0.112 0.888 51 H 0.111 0.889 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 19.919 2.820 7.532 21.482 hybrid contribution -1.210 1.518 0.045 1.941 sum 18.710 4.337 7.577 20.646 Atomic orbital electron populations 1.21763 0.91947 1.03548 1.02832 1.20918 0.97890 0.99611 0.91752 0.88821 1.20590 0.79823 0.84544 0.84331 1.90692 1.37338 1.25729 1.86625 1.46142 1.54097 1.32139 1.05807 1.21158 0.92673 0.98805 0.83316 0.88427 1.21881 0.96075 1.00089 0.98295 1.21499 0.98580 1.00964 0.94410 1.21582 0.95174 1.01169 0.97933 1.21522 0.95328 1.01067 0.96564 1.21785 0.89006 0.97244 0.94721 0.93699 1.60060 0.99410 1.57939 1.12347 1.21738 0.91816 0.95099 0.99562 1.19800 0.85220 0.86483 0.85960 1.90535 1.86433 1.32583 1.36995 1.41853 1.05159 1.34370 1.38619 1.19652 0.81798 1.18377 1.23095 0.87994 1.25251 1.00072 0.96319 0.96230 1.69598 1.31094 1.25865 1.27818 0.85926 0.80900 0.78886 0.78571 1.19913 1.20975 1.19863 1.21944 0.96014 1.01504 0.95666 1.23097 1.05281 0.97444 0.96339 1.22770 0.93620 1.01039 1.01896 0.91432 0.91227 0.91926 0.76936 0.91985 0.91397 0.91558 0.91888 0.91643 0.92095 0.91332 0.90803 0.82845 0.94078 0.89554 0.77504 0.91820 0.87410 0.89003 0.88805 0.88914 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.07 37.16 0.34 -1.06 16 2 C -0.08 -0.78 2.88 -91.77 -0.26 -1.05 16 3 H 0.09 0.74 7.90 -51.93 -0.41 0.33 16 4 C 0.52 6.33 6.99 -10.98 -0.08 6.26 16 5 O -0.53 -8.18 14.75 5.56 0.08 -8.10 16 6 N -0.73 -7.86 4.03 -53.81 -0.22 -8.08 16 7 C 0.15 1.67 2.02 -67.93 -0.14 1.54 16 8 H 0.10 1.40 7.58 -51.93 -0.39 1.01 16 9 C -0.12 -1.22 5.49 -26.73 -0.15 -1.37 16 10 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 11 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 12 C -0.11 -1.20 5.42 -26.73 -0.15 -1.34 16 13 C 0.08 0.99 2.05 -67.71 -0.14 0.85 16 14 H 0.05 0.50 7.80 -51.93 -0.40 0.09 16 15 N -0.66 -10.47 5.93 -108.00 -0.64 -11.12 16 16 C 0.05 0.86 5.96 -4.98 -0.03 0.83 16 17 C 0.44 10.22 7.82 -10.99 -0.09 10.13 16 18 O -0.58 -15.68 15.78 5.55 0.09 -15.60 16 19 N -0.56 -14.07 5.29 -10.96 -0.06 -14.13 16 20 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 21 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.32 13.05 55.50 0.72 -23.60 16 24 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 C -0.13 -1.33 4.72 -90.62 -0.43 -1.76 16 29 C -0.18 -1.51 10.18 -26.69 -0.27 -1.79 16 30 C -0.16 -1.55 8.98 -26.70 -0.24 -1.79 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.59 7.56 -51.93 -0.39 0.20 16 34 H 0.40 3.63 8.02 -40.82 -0.33 3.30 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.81 7.45 -51.93 -0.39 0.42 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.35 5.83 7.26 -39.29 -0.29 5.55 16 44 H 0.04 0.62 8.05 -51.93 -0.42 0.20 16 45 H 0.09 1.38 7.44 -51.93 -0.39 0.99 16 46 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 47 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 48 H 0.11 1.15 8.11 -51.93 -0.42 0.73 16 49 H 0.09 0.67 8.05 -51.93 -0.42 0.25 16 50 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 51 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 52 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 LS Contribution 414.58 15.07 6.25 6.25 Total: -1.00 -32.01 414.58 -10.13 -42.14 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: -9.15 Total: 17.21 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -2.18 Total: -0.90 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.19 Total: -56.93 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: 0.17 Total: -23.70 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.01 -10.13 -42.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225533803.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.944 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds