Wall clock time and date at job start Tue Mar 31 2020 20:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47662 * 2 1 4 4 C 1.50706 * 109.47291 * 239.99923 * 2 1 3 5 5 O 1.21277 * 119.99949 * 240.00569 * 4 2 1 6 6 N 1.34774 * 119.99740 * 60.00124 * 4 2 1 7 7 C 1.46496 * 120.00256 * 180.02562 * 6 4 2 8 8 H 1.09001 * 109.47059 * 35.00189 * 7 6 4 9 9 C 1.52997 * 109.46941 * 275.00029 * 7 6 4 10 10 C 1.53006 * 109.47164 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47127 * 59.99836 * 10 9 7 12 12 C 1.53000 * 109.47060 * 300.00449 * 11 10 9 13 13 C 1.52996 * 109.47328 * 60.00126 * 12 11 10 14 14 H 1.08992 * 109.47554 * 59.99639 * 13 12 11 15 15 N 1.46899 * 109.46973 * 179.97438 * 13 12 11 16 16 C 1.46897 * 111.00101 * 274.99799 * 15 13 12 17 17 C 1.50700 * 109.47458 * 180.02562 * 16 15 13 18 18 O 1.21294 * 119.99679 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00407 * 179.97438 * 17 16 15 20 20 C 1.37098 * 120.00424 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99840 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00317 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99958 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00116 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47097 * 59.99883 * 24 22 20 26 26 H 1.48501 * 109.47133 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46847 * 300.00126 * 24 22 20 28 28 C 1.53005 * 109.47199 * 120.00309 * 2 1 3 29 29 C 1.53001 * 117.50011 * 248.74718 * 28 2 1 30 30 C 1.52994 * 117.50079 * 180.08528 * 28 2 1 31 31 H 1.08990 * 109.47318 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46901 * 300.00344 * 1 2 3 33 33 H 1.08999 * 109.47240 * 59.99416 * 1 2 3 34 34 H 0.97011 * 119.99657 * 0.02562 * 6 4 2 35 35 H 1.09001 * 109.47375 * 299.99966 * 9 7 6 36 36 H 1.09000 * 109.47140 * 59.99984 * 9 7 6 37 37 H 1.08998 * 109.46505 * 299.99708 * 10 9 7 38 38 H 1.08996 * 109.46884 * 180.02562 * 10 9 7 39 39 H 1.09002 * 109.47153 * 180.02562 * 11 10 9 40 40 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 41 41 H 1.09004 * 109.46724 * 180.02562 * 12 11 10 42 42 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 43 43 H 1.00901 * 110.99898 * 151.04383 * 15 13 12 44 44 H 1.09001 * 109.46918 * 300.00193 * 16 15 13 45 45 H 1.08998 * 109.47043 * 59.99909 * 16 15 13 46 46 H 0.97001 * 120.00021 * 359.97438 * 19 17 16 47 47 H 0.96995 * 120.00520 * 179.97438 * 23 22 20 48 48 H 1.09003 * 115.54949 * 34.41295 * 28 2 1 49 49 H 1.08999 * 117.49703 * 359.97438 * 29 28 2 50 50 H 1.08995 * 117.49830 * 145.01672 * 29 28 2 51 51 H 1.09007 * 117.49983 * 214.97868 * 30 28 2 52 52 H 1.09002 * 117.50132 * 359.97205 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7295 -1.6965 -1.1192 6 7 1.7068 -0.2500 -2.4546 7 6 2.1946 -0.9408 -3.6507 8 1 2.2308 -2.0136 -3.4614 9 6 3.5973 -0.4359 -3.9948 10 6 4.1071 -1.1579 -5.2438 11 6 3.1632 -0.8790 -6.4151 12 6 1.7604 -1.3838 -6.0710 13 6 1.2507 -0.6618 -4.8221 14 1 1.2144 0.4109 -5.0119 15 7 -0.0964 -1.1461 -4.4921 16 6 -1.1192 -0.4172 -5.2541 17 6 -2.4848 -0.9398 -4.8894 18 8 -2.5951 -1.8321 -4.0753 19 7 -3.5835 -0.4159 -5.4679 20 6 -4.8258 -0.8917 -5.1366 21 1 -4.9241 -1.6862 -4.4117 22 6 -5.9585 -0.3518 -5.7335 23 7 -5.8390 0.6146 -6.6159 24 14 -7.6513 -0.9996 -5.2815 25 1 -7.8841 -0.8045 -3.8279 26 1 -8.6852 -0.2624 -6.0513 27 1 -7.7301 -2.4467 -5.6055 28 6 2.0400 -0.7213 1.2492 29 6 2.7393 0.1229 2.3165 30 6 3.5549 -0.8264 1.4353 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.1494 0.5390 -2.5435 35 1 3.5611 0.6369 -4.1842 36 1 4.2699 -0.6351 -3.1605 37 1 4.1435 -2.2306 -5.0538 38 1 5.1066 -0.7985 -5.4885 39 1 3.5261 -1.3937 -7.3047 40 1 3.1269 0.1937 -6.6049 41 1 1.0881 -1.1855 -6.9057 42 1 1.7967 -2.4565 -5.8811 43 1 -0.2706 -1.0825 -3.5003 44 1 -1.0615 0.6449 -5.0159 45 1 -0.9480 -0.5601 -6.3210 46 1 -3.4953 0.2980 -6.1188 47 1 -6.6296 0.9912 -7.0329 48 1 1.4318 -1.5595 1.5894 49 1 2.8364 1.1922 2.1285 50 1 2.5915 -0.1600 3.3587 51 1 3.9435 -1.7337 1.8982 52 1 4.1884 -0.3821 0.6675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225533803.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:32 Heat of formation + Delta-G solvation = -91.654262 kcal Electronic energy + Delta-G solvation = -30203.273420 eV Core-core repulsion = 26201.366875 eV Total energy + Delta-G solvation = -4001.906545 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.47632 -40.25641 -39.52849 -37.84966 -36.17481 -35.49956 -35.23001 -33.31911 -33.24365 -30.85891 -30.05142 -27.73258 -25.81215 -25.69689 -23.86492 -23.18542 -22.56854 -22.06836 -21.28607 -21.01827 -20.39799 -19.89361 -18.43000 -17.69357 -17.34729 -16.79783 -16.47730 -16.38700 -16.19041 -15.91819 -15.68474 -15.43026 -15.27942 -15.04467 -14.90461 -14.80984 -14.20791 -13.93510 -13.60807 -13.53188 -13.44424 -13.32668 -13.19801 -13.08004 -12.87812 -12.75355 -12.43263 -12.39193 -12.28222 -12.13472 -12.12096 -12.01385 -11.70161 -11.53311 -11.50210 -11.33880 -11.18552 -10.97520 -10.52282 -10.34770 -10.04794 -10.01224 -9.34441 -8.46535 -5.95002 1.39432 1.41741 1.52194 1.66449 2.05603 2.11022 2.28808 2.84783 2.99414 3.20933 3.45767 3.56480 3.59080 3.80179 3.90924 3.98574 4.04202 4.17278 4.19567 4.24710 4.27402 4.32686 4.34809 4.38282 4.47557 4.49104 4.53944 4.56018 4.61091 4.81251 4.83322 4.87052 4.93290 4.94479 5.04157 5.06634 5.18182 5.19437 5.20075 5.27073 5.28140 5.33745 5.35738 5.40986 5.48593 5.55934 5.90593 6.11661 6.36112 6.52070 6.60725 7.13149 7.26897 7.56770 8.12594 8.70552 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010091 B = 0.002951 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.984655 B = 9486.319316 C =11825.850446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.072 4.072 3 H 0.120 0.880 4 C 0.516 3.484 5 O -0.568 6.568 6 N -0.722 5.722 7 C 0.150 3.850 8 H 0.062 0.938 9 C -0.115 4.115 10 C -0.115 4.115 11 C -0.112 4.112 12 C -0.107 4.107 13 C 0.089 3.911 14 H 0.069 0.931 15 N -0.682 5.682 16 C 0.066 3.934 17 C 0.437 3.563 18 O -0.624 6.624 19 N -0.571 5.571 20 C -0.334 4.334 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.990 3.010 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.274 1.274 28 C -0.151 4.151 29 C -0.159 4.159 30 C -0.169 4.169 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.407 0.593 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.343 0.657 44 H 0.072 0.928 45 H 0.103 0.897 46 H 0.397 0.603 47 H 0.278 0.722 48 H 0.094 0.906 49 H 0.109 0.891 50 H 0.105 0.895 51 H 0.087 0.913 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.218 6.933 7.024 22.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.093 4.093 3 H 0.138 0.862 4 C 0.303 3.697 5 O -0.447 6.447 6 N -0.374 5.374 7 C 0.045 3.955 8 H 0.080 0.920 9 C -0.154 4.154 10 C -0.153 4.153 11 C -0.150 4.150 12 C -0.146 4.146 13 C -0.021 4.021 14 H 0.086 0.914 15 N -0.315 5.315 16 C -0.066 4.066 17 C 0.225 3.775 18 O -0.511 6.511 19 N -0.208 5.208 20 C -0.464 4.464 21 H 0.095 0.905 22 C -0.210 4.210 23 N -0.560 5.560 24 Si 0.814 3.186 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.200 1.200 28 C -0.169 4.169 29 C -0.195 4.195 30 C -0.206 4.206 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.243 0.757 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.163 0.837 44 H 0.090 0.910 45 H 0.121 0.879 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.112 0.888 49 H 0.127 0.873 50 H 0.123 0.877 51 H 0.105 0.895 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 20.506 5.222 7.089 22.316 hybrid contribution -1.353 0.727 0.177 1.546 sum 19.153 5.949 7.266 21.331 Atomic orbital electron populations 1.21740 0.91985 1.02199 1.03831 1.20910 0.97603 1.00497 0.90252 0.86173 1.21106 0.79171 0.84109 0.85294 1.90674 1.39274 1.27517 1.87193 1.46084 1.53767 1.32169 1.05347 1.21039 0.93948 0.97068 0.83444 0.91970 1.21804 0.94223 1.01148 0.98252 1.21501 0.99614 1.00166 0.94004 1.21533 0.93233 1.02109 0.98117 1.21538 0.97034 0.99938 0.96050 1.21848 0.86805 0.98437 0.94992 0.91358 1.60052 1.00860 1.58869 1.11763 1.21598 0.88157 0.96387 1.00485 1.20885 0.87001 0.85264 0.84371 1.90508 1.87483 1.34408 1.38674 1.41902 1.05049 1.34767 1.39130 1.19602 0.83702 1.19054 1.24014 0.90523 1.25984 1.03008 0.96252 0.95782 1.69652 1.32277 1.26128 1.27926 0.85037 0.76879 0.78246 0.78487 1.19629 1.19407 1.19968 1.21970 0.95913 1.02186 0.96853 1.23179 1.02283 0.97858 0.96224 1.22745 0.93444 1.01740 1.02672 0.93941 0.89497 0.91619 0.75683 0.90093 0.92707 0.92889 0.89994 0.90591 0.90509 0.91494 0.92831 0.83692 0.90997 0.87868 0.76924 0.91269 0.88820 0.87279 0.87690 0.89464 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.07 71.98 0.65 -2.01 16 2 C -0.07 -1.34 2.88 -11.54 -0.03 -1.37 16 3 H 0.12 1.61 7.90 -2.39 -0.02 1.59 16 4 C 0.52 12.65 6.99 87.66 0.61 13.27 16 5 O -0.57 -18.39 14.75 -3.02 -0.04 -18.44 16 6 N -0.72 -15.13 4.03 -442.54 -1.78 -16.91 16 7 C 0.15 3.40 2.02 44.99 0.09 3.49 16 8 H 0.06 1.88 7.58 -2.39 -0.02 1.86 16 9 C -0.12 -2.09 5.49 30.60 0.17 -1.92 16 10 C -0.11 -1.85 5.92 30.60 0.18 -1.67 16 11 C -0.11 -1.72 5.92 30.59 0.18 -1.54 16 12 C -0.11 -2.28 5.42 30.59 0.17 -2.11 16 13 C 0.09 1.99 2.05 44.92 0.09 2.08 16 14 H 0.07 1.27 7.80 -2.39 -0.02 1.25 16 15 N -0.68 -21.17 5.93 -495.60 -2.94 -24.11 16 16 C 0.07 2.15 5.96 85.56 0.51 2.67 16 17 C 0.44 20.45 7.82 87.66 0.69 21.13 16 18 O -0.62 -34.64 15.78 -3.07 -0.05 -34.69 16 19 N -0.57 -28.78 5.29 -306.99 -1.62 -30.40 16 20 C -0.33 -18.84 9.68 84.04 0.81 -18.02 16 21 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 22 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 23 N -0.92 -48.88 13.05 21.66 0.28 -48.60 16 24 Si 0.99 42.65 29.55 68.60 2.03 44.68 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 26 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 C -0.15 -2.99 4.72 -10.79 -0.05 -3.04 16 29 C -0.16 -2.32 10.18 30.62 0.31 -2.01 16 30 C -0.17 -3.34 8.98 30.62 0.27 -3.06 16 31 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.19 7.56 -2.39 -0.02 1.17 16 34 H 0.41 6.79 8.02 -92.70 -0.74 6.04 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 1.45 7.45 -2.39 -0.02 1.43 16 42 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.34 11.48 7.26 -89.69 -0.65 10.83 16 44 H 0.07 1.94 8.05 -2.39 -0.02 1.93 16 45 H 0.10 3.07 7.44 -2.39 -0.02 3.06 16 46 H 0.40 18.84 7.90 -92.71 -0.73 18.11 16 47 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 48 H 0.09 2.09 8.11 -2.39 -0.02 2.07 16 49 H 0.11 1.24 8.05 -2.39 -0.02 1.22 16 50 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 52 H 0.08 1.75 8.10 -2.39 -0.02 1.73 16 Total: -1.00 -71.54 414.58 -0.20 -71.75 By element: Atomic # 1 Polarization: 52.12 SS G_CDS: -1.20 Total: 50.92 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 5.12 Total: 5.81 kcal Atomic # 7 Polarization: -113.96 SS G_CDS: -6.06 Total: -120.03 kcal Atomic # 8 Polarization: -53.03 SS G_CDS: -0.09 Total: -53.13 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -71.54 -0.20 -71.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225533803.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.908 kcal (2) G-P(sol) polarization free energy of solvation -71.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds