Wall clock time and date at job start Tue Mar 31 2020 21:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00075 * 2 1 4 4 C 1.50701 * 119.99703 * 179.97438 * 2 1 3 5 5 C 1.53000 * 109.47033 * 95.00328 * 4 2 1 6 6 H 1.08998 * 109.47047 * 304.99638 * 5 4 2 7 7 C 1.53005 * 109.47368 * 64.99810 * 5 4 2 8 8 C 1.50701 * 109.47251 * 184.99638 * 5 4 2 9 9 O 1.21276 * 120.00060 * 0.02562 * 8 5 4 10 10 N 1.34782 * 120.00072 * 179.97438 * 8 5 4 11 11 C 1.46493 * 119.99878 * 180.02562 * 10 8 5 12 12 C 1.53118 * 109.52284 * 155.00311 * 11 10 8 13 13 C 1.53036 * 109.28068 * 177.55567 * 12 11 10 14 14 N 1.46843 * 109.52229 * 300.82162 * 13 12 11 15 15 C 1.46902 * 110.99818 * 185.83572 * 14 13 12 16 16 C 1.50702 * 109.47027 * 169.99758 * 15 14 13 17 17 O 1.21293 * 120.00255 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99928 * 179.72353 * 16 15 14 19 19 C 1.37101 * 120.00327 * 180.27606 * 18 16 15 20 20 H 1.08001 * 119.99426 * 0.02562 * 19 18 16 21 21 C 1.38942 * 120.00412 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00005 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00325 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47047 * 89.99811 * 23 21 19 25 25 H 1.48501 * 109.47447 * 210.00167 * 23 21 19 26 26 H 1.48499 * 109.46902 * 330.00508 * 23 21 19 27 27 C 1.46843 * 111.20082 * 61.74351 * 14 13 12 28 28 C 1.53038 * 109.52070 * 298.25410 * 27 14 13 29 29 H 1.08006 * 119.99902 * 180.02562 * 1 2 3 30 30 H 1.07995 * 119.99808 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47040 * 269.99508 * 3 2 1 32 32 H 1.09000 * 109.47014 * 29.99934 * 3 2 1 33 33 H 1.09004 * 109.46878 * 149.99931 * 3 2 1 34 34 H 1.09002 * 109.47364 * 335.00130 * 4 2 1 35 35 H 1.09003 * 109.46940 * 215.00021 * 4 2 1 36 36 H 1.09003 * 109.46824 * 59.99633 * 7 5 4 37 37 H 1.08993 * 109.47450 * 180.02562 * 7 5 4 38 38 H 1.09004 * 109.46737 * 300.00350 * 7 5 4 39 39 H 0.97001 * 119.99258 * 0.02562 * 10 8 5 40 40 H 1.08996 * 109.52427 * 34.87452 * 11 10 8 41 41 H 1.08995 * 109.50555 * 57.61449 * 12 11 10 42 42 H 1.08995 * 109.50409 * 297.49990 * 12 11 10 43 43 H 1.08996 * 109.46465 * 180.80442 * 13 12 11 44 44 H 1.09004 * 109.45131 * 60.83038 * 13 12 11 45 45 H 1.09004 * 109.47131 * 50.00001 * 15 14 13 46 46 H 1.08994 * 109.47471 * 289.99751 * 15 14 13 47 47 H 0.97000 * 120.00317 * 0.28382 * 18 16 15 48 48 H 0.96996 * 120.00330 * 179.97438 * 22 21 19 49 49 H 1.08997 * 109.46379 * 58.26863 * 27 14 13 50 50 H 1.09000 * 109.46577 * 178.24622 * 27 14 13 51 51 H 1.09001 * 109.50668 * 299.24264 * 28 27 14 52 52 H 1.08995 * 109.50406 * 179.11983 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6846 -1.4363 6 1 1.5245 -1.7042 -2.0466 7 6 3.4046 -0.6533 -2.0042 8 6 3.0716 -3.0469 -1.4483 9 8 3.2243 -3.6547 -0.4100 10 7 3.4773 -3.5902 -2.6131 11 6 4.1031 -4.9147 -2.6248 12 6 3.9058 -5.5618 -3.9985 13 6 4.6135 -6.9184 -4.0244 14 7 6.0443 -6.7307 -3.7529 15 6 6.7793 -7.9934 -3.9060 16 6 8.2608 -7.7206 -3.8636 17 8 8.6647 -6.5861 -3.7194 18 7 9.1369 -8.7382 -3.9797 19 6 10.4847 -8.4908 -3.9354 20 1 10.8443 -7.4805 -3.8070 21 6 11.3879 -9.5397 -4.0557 22 7 10.9504 -10.7689 -4.2124 23 14 13.2243 -9.2026 -3.9961 24 1 13.6972 -9.2843 -2.5907 25 1 13.9397 -10.2110 -4.8186 26 1 13.4958 -7.8443 -4.5314 27 6 6.2607 -6.1544 -2.4197 28 6 5.6022 -4.7749 -2.3459 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 2.2452 1.6196 -1.0276 32 1 1.4744 2.0647 0.5138 33 1 3.0159 1.1747 0.5139 34 1 1.4385 -2.0853 0.4352 35 1 2.9742 -1.1986 0.5900 36 1 4.3074 -0.6336 -1.3938 37 1 3.6635 -0.9233 -3.0279 38 1 2.9386 0.3321 -1.9955 39 1 3.3549 -3.1042 -3.4436 40 1 3.6459 -5.5404 -1.8584 41 1 4.3278 -4.9164 -4.7688 42 1 2.8412 -5.7031 -4.1846 43 1 4.4869 -7.3754 -5.0058 44 1 4.1814 -7.5678 -3.2629 45 1 6.5212 -8.4504 -4.8614 46 1 6.5112 -8.6706 -3.0952 47 1 8.8140 -9.6456 -4.0948 48 1 11.5809 -11.5012 -4.2967 49 1 5.8210 -6.8075 -1.6660 50 1 7.3306 -6.0563 -2.2357 51 1 6.0510 -4.1171 -3.0903 52 1 5.7496 -4.3540 -1.3514 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228779007.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:41 Heat of formation + Delta-G solvation = -91.023938 kcal Electronic energy + Delta-G solvation = -29219.104900 eV Core-core repulsion = 25217.225688 eV Total energy + Delta-G solvation = -4001.879212 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.35493 -40.49227 -39.16848 -37.71463 -36.22905 -35.72138 -33.96852 -33.28334 -32.29163 -31.82584 -28.78784 -28.67049 -27.28866 -26.46193 -24.90438 -24.23469 -23.24825 -21.31526 -21.01108 -20.63236 -19.86638 -19.25121 -18.09858 -17.67718 -17.43248 -16.70864 -16.55183 -16.43257 -16.29197 -15.72207 -15.53967 -15.39945 -15.32850 -15.07262 -14.81024 -14.50803 -14.42582 -14.29957 -13.92221 -13.76969 -13.49925 -13.21940 -13.18063 -12.94740 -12.88784 -12.76837 -12.45927 -12.42401 -12.30528 -12.20112 -12.15752 -12.11499 -11.96176 -11.86001 -11.82681 -11.55045 -11.43615 -10.77174 -10.29458 -10.05092 -9.96267 -9.86574 -9.20825 -8.45866 -5.94269 1.32057 1.37594 1.41157 1.53871 1.63530 2.06798 2.19740 2.28656 2.76517 3.20859 3.38459 3.59070 3.75764 3.84712 3.89949 3.94002 4.07393 4.19006 4.21042 4.23862 4.30217 4.36199 4.42101 4.47833 4.52456 4.55857 4.64382 4.69007 4.72678 4.74707 4.86470 4.89486 4.91459 4.97982 5.00433 5.08364 5.09388 5.11723 5.16191 5.18868 5.30188 5.38712 5.41555 5.51879 5.77154 5.89161 6.00503 6.07665 6.24719 6.57703 6.61986 7.14135 7.27409 7.57962 8.14091 8.71548 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024171 B = 0.001829 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.111510 B =15308.350407 C =15999.240788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.128 4.128 3 C -0.122 4.122 4 C -0.066 4.066 5 C -0.094 4.094 6 H 0.119 0.881 7 C -0.148 4.148 8 C 0.512 3.488 9 O -0.587 6.587 10 N -0.710 5.710 11 C 0.150 3.850 12 C -0.109 4.109 13 C 0.054 3.946 14 N -0.529 5.529 15 C 0.057 3.943 16 C 0.441 3.559 17 O -0.614 6.614 18 N -0.575 5.575 19 C -0.332 4.332 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.273 1.273 27 C 0.060 3.940 28 C -0.109 4.109 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.416 0.584 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.039 0.961 45 H 0.116 0.884 46 H 0.063 0.937 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.024 0.976 50 H 0.061 0.939 51 H 0.067 0.933 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.615 17.693 1.209 29.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.128 4.128 3 C -0.179 4.179 4 C -0.104 4.104 5 C -0.115 4.115 6 H 0.137 0.863 7 C -0.205 4.205 8 C 0.300 3.700 9 O -0.467 6.467 10 N -0.362 5.362 11 C 0.045 3.955 12 C -0.147 4.147 13 C -0.073 4.073 14 N -0.254 5.254 15 C -0.074 4.074 16 C 0.228 3.772 17 O -0.500 6.500 18 N -0.213 5.213 19 C -0.462 4.462 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.198 1.198 27 C -0.068 4.068 28 C -0.148 4.148 29 H 0.113 0.887 30 H 0.129 0.871 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.253 0.747 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.057 0.943 45 H 0.134 0.866 46 H 0.081 0.919 47 H 0.230 0.770 48 H 0.086 0.914 49 H 0.042 0.958 50 H 0.080 0.920 51 H 0.085 0.915 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -22.966 18.164 1.656 29.327 hybrid contribution 0.845 -1.176 0.563 1.553 sum -22.120 16.988 2.219 27.979 Atomic orbital electron populations 1.23846 0.95112 1.02477 1.01798 1.21727 0.95516 0.95351 1.00190 1.21029 1.00018 0.93869 1.02955 1.20448 1.00001 0.94872 0.95092 1.21284 1.00737 0.90576 0.98890 0.86308 1.21968 0.98084 0.99213 1.01213 1.21300 0.77304 0.88389 0.83052 1.90694 1.57754 1.64533 1.33714 1.45972 1.60956 1.19259 1.09972 1.20894 0.91428 0.84202 0.98946 1.21793 1.01706 0.96074 0.95173 1.22215 0.85477 0.97287 1.02370 1.61522 1.09924 1.24898 1.29094 1.21733 0.90136 0.91790 1.03747 1.20809 0.89217 0.85015 0.82163 1.90462 1.80753 1.23265 1.55484 1.41937 1.05741 1.09060 1.64516 1.19647 0.82468 0.95081 1.48954 0.90397 1.26013 1.04566 0.94335 0.96361 1.69671 1.37227 0.99538 1.49724 0.84944 0.76938 0.78068 0.78475 1.19830 1.19455 1.19807 1.22011 1.00954 0.95340 0.88520 1.21763 0.95714 0.96373 1.00917 0.88659 0.87138 0.89872 0.91219 0.92191 0.92181 0.92258 0.93391 0.90740 0.89149 0.74710 0.91447 0.89814 0.88046 0.88217 0.94251 0.86578 0.91917 0.77047 0.91353 0.95760 0.92022 0.91451 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.22 13.89 67.78 0.94 -1.28 16 2 C -0.13 -1.62 4.93 -16.49 -0.08 -1.70 16 3 C -0.12 -1.18 9.01 71.23 0.64 -0.54 16 4 C -0.07 -1.12 4.22 29.85 0.13 -0.99 16 5 C -0.09 -1.33 2.71 -11.54 -0.03 -1.36 16 6 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 7 C -0.15 -1.63 8.64 71.98 0.62 -1.01 16 8 C 0.51 11.01 7.12 87.66 0.62 11.64 16 9 O -0.59 -18.40 15.58 -3.02 -0.05 -18.44 16 10 N -0.71 -12.60 4.97 -442.16 -2.20 -14.80 16 11 C 0.15 3.39 2.52 45.07 0.11 3.50 16 12 C -0.11 -1.93 5.57 30.65 0.17 -1.76 16 13 C 0.05 1.19 5.46 86.33 0.47 1.66 16 14 N -0.53 -16.98 4.40 -900.95 -3.96 -20.94 16 15 C 0.06 1.99 5.45 85.56 0.47 2.45 16 16 C 0.44 21.21 7.46 87.66 0.65 21.86 16 17 O -0.61 -34.16 13.90 -3.07 -0.04 -34.21 16 18 N -0.57 -29.84 5.29 -306.98 -1.62 -31.46 16 19 C -0.33 -19.07 9.68 84.04 0.81 -18.25 16 20 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 21 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 22 N -0.92 -50.07 13.05 21.66 0.28 -49.79 16 23 Si 0.99 43.48 29.55 68.60 2.03 45.51 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 C 0.06 2.10 5.10 86.33 0.44 2.54 16 28 C -0.11 -3.21 5.67 30.65 0.17 -3.03 16 29 H 0.10 1.10 7.99 -2.91 -0.02 1.08 16 30 H 0.11 0.95 8.04 -2.91 -0.02 0.93 16 31 H 0.08 0.59 6.39 -2.39 -0.02 0.57 16 32 H 0.07 0.57 8.06 -2.39 -0.02 0.55 16 33 H 0.06 0.64 8.08 -2.39 -0.02 0.63 16 34 H 0.06 1.20 7.80 -2.39 -0.02 1.18 16 35 H 0.06 1.19 8.10 -2.39 -0.02 1.17 16 36 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.07 0.62 7.57 -2.39 -0.02 0.61 16 38 H 0.09 0.72 5.08 -2.39 -0.01 0.71 16 39 H 0.42 4.62 8.02 -92.71 -0.74 3.87 16 40 H 0.07 1.79 7.58 -2.39 -0.02 1.77 16 41 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.10 1.83 8.01 -2.39 -0.02 1.82 16 44 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.12 3.43 7.99 -2.38 -0.02 3.41 16 46 H 0.06 2.01 8.12 -2.39 -0.02 2.00 16 47 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 48 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 49 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.06 2.70 5.78 -2.39 -0.01 2.69 16 51 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 52 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -74.32 412.12 0.49 -73.83 By element: Atomic # 1 Polarization: 37.37 SS G_CDS: -0.56 Total: 36.81 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 6.61 Total: 13.49 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -7.50 Total: -116.99 kcal Atomic # 8 Polarization: -52.56 SS G_CDS: -0.09 Total: -52.65 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -74.32 0.49 -73.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228779007.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.192 kcal (2) G-P(sol) polarization free energy of solvation -74.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds