Wall clock time and date at job start Tue Mar 31 2020 21:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00075 * 2 1 4 4 C 1.50701 * 120.00001 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.47363 * 94.99916 * 4 2 1 6 6 H 1.09003 * 109.46690 * 55.00030 * 5 4 2 7 7 C 1.52995 * 109.47028 * 295.00002 * 5 4 2 8 8 C 1.50698 * 109.47004 * 174.99681 * 5 4 2 9 9 O 1.21283 * 120.00472 * 0.02562 * 8 5 4 10 10 N 1.34777 * 119.99538 * 179.97438 * 8 5 4 11 11 C 1.46499 * 119.99665 * 179.72653 * 10 8 5 12 12 C 1.53126 * 109.52254 * 274.96049 * 11 10 8 13 13 C 1.53042 * 109.27464 * 182.44200 * 12 11 10 14 14 N 1.46842 * 109.52706 * 59.18336 * 13 12 11 15 15 C 1.46894 * 111.00111 * 174.15925 * 14 13 12 16 16 C 1.50697 * 109.47240 * 294.20350 * 15 14 13 17 17 O 1.21294 * 120.00054 * 0.02562 * 16 15 14 18 18 N 1.34778 * 120.00025 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99759 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99632 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99945 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00226 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99981 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47301 * 89.99693 * 23 21 19 25 25 H 1.48497 * 109.47331 * 209.99705 * 23 21 19 26 26 H 1.48499 * 109.47090 * 329.99652 * 23 21 19 27 27 C 1.46858 * 111.19356 * 298.25650 * 14 13 12 28 28 C 1.53033 * 109.52347 * 61.74129 * 27 14 13 29 29 H 1.07998 * 120.00296 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.99896 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47391 * 270.00555 * 3 2 1 32 32 H 1.09001 * 109.46950 * 30.00305 * 3 2 1 33 33 H 1.08997 * 109.47115 * 149.99861 * 3 2 1 34 34 H 1.08998 * 109.47237 * 334.99579 * 4 2 1 35 35 H 1.09007 * 109.46895 * 214.99706 * 4 2 1 36 36 H 1.09001 * 109.46983 * 179.97438 * 7 5 4 37 37 H 1.08995 * 109.47139 * 300.00141 * 7 5 4 38 38 H 1.09003 * 109.47199 * 59.99964 * 7 5 4 39 39 H 0.97001 * 120.00485 * 0.02562 * 10 8 5 40 40 H 1.08999 * 109.52499 * 35.14731 * 11 10 8 41 41 H 1.08999 * 109.50069 * 302.38186 * 12 11 10 42 42 H 1.08998 * 109.50344 * 62.50617 * 12 11 10 43 43 H 1.08995 * 109.46245 * 299.15928 * 13 12 11 44 44 H 1.09002 * 109.44852 * 179.19473 * 13 12 11 45 45 H 1.09005 * 109.47347 * 54.20931 * 15 14 13 46 46 H 1.09002 * 109.47288 * 174.20742 * 15 14 13 47 47 H 0.96994 * 120.00012 * 0.02562 * 18 16 15 48 48 H 0.96991 * 120.00087 * 180.02562 * 22 21 19 49 49 H 1.09004 * 109.45840 * 301.72076 * 27 14 13 50 50 H 1.09000 * 109.45150 * 181.75294 * 27 14 13 51 51 H 1.09002 * 109.50280 * 180.87919 * 28 27 14 52 52 H 1.08996 * 109.50430 * 60.76367 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4377 6 1 2.9770 -0.8639 -1.9010 7 6 1.1488 -1.9538 -2.2332 8 6 3.2853 -2.9222 -1.4292 9 8 3.5767 -3.4509 -0.3773 10 7 3.7280 -3.4432 -2.5907 11 6 4.5671 -4.6441 -2.5821 12 6 6.0306 -4.2444 -2.3750 13 6 6.9087 -5.4967 -2.4278 14 7 6.7427 -6.1581 -3.7283 15 6 7.6734 -7.2859 -3.8680 16 6 9.0884 -6.7685 -3.9011 17 8 9.3006 -5.5773 -3.8162 18 7 10.1180 -7.6294 -4.0240 19 6 11.4054 -7.1586 -4.0536 20 1 11.5943 -6.0979 -3.9780 21 6 12.4669 -8.0460 -4.1809 22 7 13.7007 -7.5948 -4.2097 23 14 12.1400 -9.8805 -4.3124 24 1 11.9806 -10.2538 -5.7408 25 1 13.2819 -10.6298 -3.7295 26 1 10.8977 -10.2163 -3.5714 27 6 5.3545 -6.5932 -3.9292 28 6 4.4300 -5.3737 -3.9213 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 2.2451 1.6198 -1.0276 32 1 1.4744 2.0647 0.5139 33 1 3.0159 1.1748 0.5138 34 1 1.4386 -2.0856 0.4334 35 1 2.9742 -1.1991 0.5889 36 1 1.4080 -2.2229 -3.2572 37 1 0.5991 -2.7732 -1.7699 38 1 0.5282 -1.0577 -2.2393 39 1 3.4947 -3.0207 -3.4320 40 1 4.2509 -5.3037 -1.7739 41 1 6.3340 -3.5537 -3.1618 42 1 6.1423 -3.7624 -1.4038 43 1 6.6139 -6.1807 -1.6321 44 1 7.9530 -5.2136 -2.2950 45 1 7.5537 -7.9628 -3.0220 46 1 7.4603 -7.8204 -4.7938 47 1 9.9483 -8.5819 -4.0916 48 1 14.4417 -8.2143 -4.2989 49 1 5.0670 -7.2723 -3.1265 50 1 5.2701 -7.1067 -4.8870 51 1 3.3981 -5.6984 -4.0548 52 1 4.7082 -4.7009 -4.7324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228779008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:46 Heat of formation + Delta-G solvation = -62.819299 kcal Electronic energy + Delta-G solvation = -29220.543247 eV Core-core repulsion = 25219.887080 eV Total energy + Delta-G solvation = -4000.656167 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.43683 -39.16658 -37.85174 -36.98148 -35.03513 -33.90812 -33.29191 -31.72420 -31.30841 -30.75915 -27.69127 -27.48564 -27.22929 -24.78214 -23.68494 -23.16026 -22.17697 -20.38968 -19.67625 -19.34854 -18.75622 -18.26171 -17.25936 -16.51449 -15.97288 -15.77232 -15.42192 -15.05270 -14.98629 -14.81568 -14.54443 -14.40205 -14.05184 -13.77145 -13.62741 -13.42457 -13.38362 -13.25055 -12.98529 -12.77030 -12.47496 -12.41544 -12.23845 -12.03224 -11.82234 -11.76887 -11.63809 -11.34126 -11.26940 -11.22215 -11.15884 -11.12993 -10.68870 -10.59568 -10.53353 -9.96702 -9.84381 -9.53228 -9.36244 -9.12932 -8.53963 -8.16655 -7.93608 -6.29941 -3.81193 1.83563 2.48866 2.99840 3.03331 3.07474 3.15747 3.75133 3.92854 4.11300 4.29379 4.46221 4.51567 4.59351 4.69496 4.78319 4.81584 4.89542 5.00854 5.03983 5.14601 5.22846 5.26612 5.30033 5.36837 5.37566 5.38846 5.49033 5.50205 5.59206 5.60566 5.61939 5.63008 5.69468 5.75333 5.76370 5.84151 5.90829 5.93799 5.97549 6.08935 6.25909 6.28887 6.46128 6.50915 6.51959 7.18930 7.33420 7.36459 7.60103 8.07578 8.16077 8.61720 8.96686 9.43936 9.85136 10.83236 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027578 B = 0.001837 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.075607 B =15236.750981 C =15817.849200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 C -0.122 4.122 4 C -0.068 4.068 5 C -0.105 4.105 6 H 0.098 0.902 7 C -0.145 4.145 8 C 0.517 3.483 9 O -0.539 6.539 10 N -0.724 5.724 11 C 0.143 3.857 12 C -0.120 4.120 13 C 0.054 3.946 14 N -0.516 5.516 15 C 0.043 3.957 16 C 0.453 3.547 17 O -0.558 6.558 18 N -0.592 5.592 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.058 3.942 28 C -0.120 4.120 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.399 0.601 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.024 0.976 44 H 0.107 0.893 45 H 0.048 0.952 46 H 0.090 0.910 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.032 0.968 50 H 0.079 0.921 51 H 0.069 0.931 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.294 8.971 3.010 29.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.121 4.121 3 C -0.179 4.179 4 C -0.106 4.106 5 C -0.126 4.126 6 H 0.116 0.884 7 C -0.203 4.203 8 C 0.303 3.697 9 O -0.416 6.416 10 N -0.375 5.375 11 C 0.038 3.962 12 C -0.159 4.159 13 C -0.074 4.074 14 N -0.241 5.241 15 C -0.088 4.088 16 C 0.238 3.762 17 O -0.440 6.440 18 N -0.231 5.231 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.070 4.070 28 C -0.158 4.158 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.233 0.767 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.042 0.958 44 H 0.125 0.875 45 H 0.066 0.934 46 H 0.108 0.892 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.050 0.950 50 H 0.097 0.903 51 H 0.088 0.912 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -27.587 9.691 3.457 29.443 hybrid contribution -0.319 -1.969 0.019 1.995 sum -27.906 7.722 3.476 29.163 Atomic orbital electron populations 1.23708 0.95216 1.01788 1.02751 1.21757 0.95405 0.95642 0.99257 1.20897 1.00357 0.94463 1.02183 1.20510 1.00926 0.94310 0.94809 1.21240 0.96904 0.96090 0.98397 0.88398 1.21841 0.96257 1.02845 0.99347 1.20632 0.79821 0.85517 0.83757 1.90713 1.58109 1.61766 1.30981 1.46117 1.52677 1.29858 1.08803 1.21114 0.90636 0.85998 0.98416 1.21911 0.92992 0.98520 1.02443 1.22229 1.02860 0.94344 0.87919 1.61535 1.02746 1.26773 1.33010 1.21866 0.92823 0.92416 1.01702 1.19653 0.85419 0.87192 0.83898 1.90526 1.84700 1.15492 1.53290 1.42218 1.06724 1.07479 1.66699 1.19425 0.79429 0.96901 1.47492 0.86277 1.25032 0.94976 0.98462 0.97701 1.69617 0.98125 1.35259 1.49199 0.86674 0.78432 0.85370 0.78916 1.19632 1.20224 1.19541 1.22031 0.88338 0.95578 1.01094 1.21823 0.99108 0.97831 0.97046 0.88571 0.88475 0.91396 0.91880 0.91653 0.90668 0.90261 0.92164 0.92159 0.90996 0.76699 0.89882 0.90673 0.91387 0.95777 0.87510 0.93352 0.89188 0.79742 0.91645 0.94983 0.90299 0.91196 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.23 12.50 29.02 0.36 -0.86 16 2 C -0.12 -0.83 4.79 -101.06 -0.48 -1.31 16 3 C -0.12 -0.73 10.03 36.01 0.36 -0.36 16 4 C -0.07 -0.56 4.21 -27.88 -0.12 -0.68 16 5 C -0.10 -0.79 2.71 -91.78 -0.25 -1.04 16 6 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 7 C -0.15 -0.84 8.72 37.16 0.32 -0.51 16 8 C 0.52 5.56 7.12 -10.99 -0.08 5.48 16 9 O -0.54 -8.05 15.58 5.55 0.09 -7.97 16 10 N -0.72 -6.75 4.97 -53.68 -0.27 -7.02 16 11 C 0.14 1.62 2.52 -67.81 -0.17 1.45 16 12 C -0.12 -1.68 5.67 -26.64 -0.15 -1.83 16 13 C 0.05 0.89 5.10 -3.83 -0.02 0.87 16 14 N -0.52 -8.09 4.40 -236.11 -1.04 -9.13 16 15 C 0.04 0.72 5.45 -4.98 -0.03 0.69 16 16 C 0.45 10.21 7.46 -10.99 -0.08 10.13 16 17 O -0.56 -14.73 13.90 5.55 0.08 -14.65 16 18 N -0.59 -14.05 5.09 -10.96 -0.06 -14.11 16 19 C -0.30 -8.58 10.16 -14.93 -0.15 -8.73 16 20 H 0.12 3.84 7.39 -52.49 -0.39 3.46 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.81 13.96 55.50 0.77 -25.03 16 23 Si 0.88 19.39 27.74 -169.99 -4.71 14.67 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 26 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 27 C 0.06 0.68 5.46 -3.83 -0.02 0.66 16 28 C -0.12 -1.17 5.57 -26.65 -0.15 -1.32 16 29 H 0.10 0.51 8.04 -52.49 -0.42 0.09 16 30 H 0.10 0.58 7.99 -52.49 -0.42 0.16 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.33 8.06 -51.93 -0.42 -0.09 16 33 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 34 H 0.07 0.68 7.99 -51.93 -0.41 0.27 16 35 H 0.08 0.77 7.91 -51.93 -0.41 0.36 16 36 H 0.06 0.28 7.56 -51.93 -0.39 -0.12 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.37 6.52 -51.93 -0.34 0.03 16 39 H 0.40 2.66 8.02 -40.82 -0.33 2.33 16 40 H 0.08 1.09 7.58 -51.93 -0.39 0.69 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.11 2.14 5.78 -51.93 -0.30 1.84 16 45 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 46 H 0.09 1.29 7.99 -51.93 -0.41 0.87 16 47 H 0.37 7.72 5.76 -40.82 -0.24 7.49 16 48 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 49 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.08 0.81 8.02 -51.93 -0.42 0.40 16 51 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 52 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 411.74 15.07 6.20 6.20 Total: -1.00 -33.97 411.74 -8.79 -42.76 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -9.11 Total: 10.62 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -0.75 Total: 3.65 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.59 Total: -55.29 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: 0.16 Total: -22.62 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.71 Total: 14.67 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.97 -8.79 -42.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228779008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.059 kcal (2) G-P(sol) polarization free energy of solvation -33.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds