Wall clock time and date at job start Tue Mar 31 2020 21:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00075 * 2 1 4 4 C 1.50701 * 120.00001 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.47363 * 94.99916 * 4 2 1 6 6 H 1.09003 * 109.46690 * 55.00030 * 5 4 2 7 7 C 1.52995 * 109.47028 * 295.00002 * 5 4 2 8 8 C 1.50698 * 109.47004 * 174.99681 * 5 4 2 9 9 O 1.21283 * 120.00472 * 0.02562 * 8 5 4 10 10 N 1.34777 * 119.99538 * 179.97438 * 8 5 4 11 11 C 1.46499 * 119.99665 * 179.72653 * 10 8 5 12 12 C 1.53126 * 109.52254 * 274.96049 * 11 10 8 13 13 C 1.53042 * 109.27464 * 182.44200 * 12 11 10 14 14 N 1.46842 * 109.52706 * 59.18336 * 13 12 11 15 15 C 1.46894 * 111.00111 * 174.15925 * 14 13 12 16 16 C 1.50697 * 109.47240 * 294.20350 * 15 14 13 17 17 O 1.21294 * 120.00054 * 0.02562 * 16 15 14 18 18 N 1.34778 * 120.00025 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99759 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99632 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99945 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00226 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99981 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47301 * 89.99693 * 23 21 19 25 25 H 1.48497 * 109.47331 * 209.99705 * 23 21 19 26 26 H 1.48499 * 109.47090 * 329.99652 * 23 21 19 27 27 C 1.46858 * 111.19356 * 298.25650 * 14 13 12 28 28 C 1.53033 * 109.52347 * 61.74129 * 27 14 13 29 29 H 1.07998 * 120.00296 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.99896 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47391 * 270.00555 * 3 2 1 32 32 H 1.09001 * 109.46950 * 30.00305 * 3 2 1 33 33 H 1.08997 * 109.47115 * 149.99861 * 3 2 1 34 34 H 1.08998 * 109.47237 * 334.99579 * 4 2 1 35 35 H 1.09007 * 109.46895 * 214.99706 * 4 2 1 36 36 H 1.09001 * 109.46983 * 179.97438 * 7 5 4 37 37 H 1.08995 * 109.47139 * 300.00141 * 7 5 4 38 38 H 1.09003 * 109.47199 * 59.99964 * 7 5 4 39 39 H 0.97001 * 120.00485 * 0.02562 * 10 8 5 40 40 H 1.08999 * 109.52499 * 35.14731 * 11 10 8 41 41 H 1.08999 * 109.50069 * 302.38186 * 12 11 10 42 42 H 1.08998 * 109.50344 * 62.50617 * 12 11 10 43 43 H 1.08995 * 109.46245 * 299.15928 * 13 12 11 44 44 H 1.09002 * 109.44852 * 179.19473 * 13 12 11 45 45 H 1.09005 * 109.47347 * 54.20931 * 15 14 13 46 46 H 1.09002 * 109.47288 * 174.20742 * 15 14 13 47 47 H 0.96994 * 120.00012 * 0.02562 * 18 16 15 48 48 H 0.96991 * 120.00087 * 180.02562 * 22 21 19 49 49 H 1.09004 * 109.45840 * 301.72076 * 27 14 13 50 50 H 1.09000 * 109.45150 * 181.75294 * 27 14 13 51 51 H 1.09002 * 109.50280 * 180.87919 * 28 27 14 52 52 H 1.08996 * 109.50430 * 60.76367 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4377 6 1 2.9770 -0.8639 -1.9010 7 6 1.1488 -1.9538 -2.2332 8 6 3.2853 -2.9222 -1.4292 9 8 3.5767 -3.4509 -0.3773 10 7 3.7280 -3.4432 -2.5907 11 6 4.5671 -4.6441 -2.5821 12 6 6.0306 -4.2444 -2.3750 13 6 6.9087 -5.4967 -2.4278 14 7 6.7427 -6.1581 -3.7283 15 6 7.6734 -7.2859 -3.8680 16 6 9.0884 -6.7685 -3.9011 17 8 9.3006 -5.5773 -3.8162 18 7 10.1180 -7.6294 -4.0240 19 6 11.4054 -7.1586 -4.0536 20 1 11.5943 -6.0979 -3.9780 21 6 12.4669 -8.0460 -4.1809 22 7 13.7007 -7.5948 -4.2097 23 14 12.1400 -9.8805 -4.3124 24 1 11.9806 -10.2538 -5.7408 25 1 13.2819 -10.6298 -3.7295 26 1 10.8977 -10.2163 -3.5714 27 6 5.3545 -6.5932 -3.9292 28 6 4.4300 -5.3737 -3.9213 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 2.2451 1.6198 -1.0276 32 1 1.4744 2.0647 0.5139 33 1 3.0159 1.1748 0.5138 34 1 1.4386 -2.0856 0.4334 35 1 2.9742 -1.1991 0.5889 36 1 1.4080 -2.2229 -3.2572 37 1 0.5991 -2.7732 -1.7699 38 1 0.5282 -1.0577 -2.2393 39 1 3.4947 -3.0207 -3.4320 40 1 4.2509 -5.3037 -1.7739 41 1 6.3340 -3.5537 -3.1618 42 1 6.1423 -3.7624 -1.4038 43 1 6.6139 -6.1807 -1.6321 44 1 7.9530 -5.2136 -2.2950 45 1 7.5537 -7.9628 -3.0220 46 1 7.4603 -7.8204 -4.7938 47 1 9.9483 -8.5819 -4.0916 48 1 14.4417 -8.2143 -4.2989 49 1 5.0670 -7.2723 -3.1265 50 1 5.2701 -7.1067 -4.8870 51 1 3.3981 -5.6984 -4.0548 52 1 4.7082 -4.7009 -4.7324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228779008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:45 Heat of formation + Delta-G solvation = -88.150352 kcal Electronic energy + Delta-G solvation = -29221.641684 eV Core-core repulsion = 25219.887080 eV Total energy + Delta-G solvation = -4001.754604 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.36012 -40.58016 -39.22898 -37.69686 -36.24788 -35.75560 -34.00362 -33.73617 -32.34591 -31.82187 -28.85784 -28.11248 -27.91900 -26.34148 -24.81609 -24.23077 -23.18089 -21.34228 -21.24063 -20.58944 -20.19508 -19.31055 -18.09109 -17.64577 -17.40880 -16.89004 -16.62662 -16.35359 -16.26446 -15.67405 -15.50637 -15.28766 -15.27280 -15.06925 -14.84417 -14.51881 -14.44756 -14.25570 -14.05224 -13.89604 -13.77688 -13.38610 -13.24331 -12.99679 -12.94213 -12.78871 -12.52350 -12.42035 -12.32365 -12.20278 -12.17852 -11.99177 -11.92374 -11.84929 -11.81026 -11.55471 -11.44790 -10.73737 -10.36395 -10.23114 -10.02230 -9.87262 -9.20759 -8.40525 -6.01073 1.30357 1.32430 1.35895 1.44601 1.63588 1.97597 2.19943 2.23498 2.63014 3.14558 3.22430 3.60029 3.76304 3.84819 3.89454 3.93718 4.05756 4.13478 4.16922 4.25171 4.26957 4.34564 4.40627 4.45363 4.50405 4.55541 4.64826 4.65916 4.75087 4.82361 4.85643 4.90943 4.92456 4.96269 4.98904 5.08226 5.10084 5.12272 5.15524 5.20666 5.29585 5.31844 5.52063 5.54305 5.77267 5.90695 6.00577 6.02433 6.23485 6.57418 6.61245 6.89890 7.27110 7.41434 7.99306 8.77253 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027578 B = 0.001837 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.075607 B =15236.750981 C =15817.849200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.131 4.131 3 C -0.122 4.122 4 C -0.065 4.065 5 C -0.098 4.098 6 H 0.113 0.887 7 C -0.140 4.140 8 C 0.513 3.487 9 O -0.587 6.587 10 N -0.711 5.711 11 C 0.151 3.849 12 C -0.112 4.112 13 C 0.060 3.940 14 N -0.533 5.533 15 C 0.054 3.946 16 C 0.450 3.550 17 O -0.605 6.605 18 N -0.593 5.593 19 C -0.327 4.327 20 H 0.054 0.946 21 C -0.016 4.016 22 N -0.936 5.936 23 Si 0.966 3.034 24 H -0.255 1.255 25 H -0.277 1.277 26 H -0.232 1.232 27 C 0.055 3.945 28 C -0.111 4.111 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.415 0.585 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.048 0.952 43 H 0.029 0.971 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.127 0.873 47 H 0.389 0.611 48 H 0.278 0.722 49 H 0.043 0.957 50 H 0.103 0.897 51 H 0.102 0.898 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.149 6.851 1.434 32.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.131 4.131 3 C -0.179 4.179 4 C -0.103 4.103 5 C -0.119 4.119 6 H 0.131 0.869 7 C -0.197 4.197 8 C 0.301 3.699 9 O -0.467 6.467 10 N -0.362 5.362 11 C 0.046 3.954 12 C -0.151 4.151 13 C -0.069 4.069 14 N -0.259 5.259 15 C -0.077 4.077 16 C 0.238 3.762 17 O -0.489 6.489 18 N -0.235 5.235 19 C -0.456 4.456 20 H 0.072 0.928 21 C -0.215 4.215 22 N -0.577 5.577 23 Si 0.786 3.214 24 H -0.180 1.180 25 H -0.202 1.202 26 H -0.156 1.156 27 C -0.072 4.072 28 C -0.149 4.149 29 H 0.127 0.873 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.253 0.747 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.047 0.953 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.145 0.855 47 H 0.225 0.775 48 H 0.088 0.912 49 H 0.061 0.939 50 H 0.121 0.879 51 H 0.120 0.880 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -31.494 7.588 1.846 32.447 hybrid contribution 0.891 -1.143 0.555 1.552 sum -30.602 6.445 2.401 31.366 Atomic orbital electron populations 1.23840 0.94906 1.02527 1.01364 1.21709 0.95679 0.95150 1.00537 1.20909 0.99983 0.94204 1.02784 1.20433 0.99882 0.94978 0.95040 1.21246 0.97489 0.94707 0.98422 0.86930 1.21829 0.95000 1.03125 0.99764 1.21250 0.79494 0.85969 0.83230 1.90695 1.59932 1.63302 1.32732 1.45982 1.51648 1.29228 1.09352 1.20906 0.88601 0.86573 0.99338 1.21787 0.95054 0.97261 1.00962 1.22004 1.00390 0.95489 0.88983 1.61495 1.05118 1.27039 1.32204 1.21829 0.88420 0.92876 1.04581 1.20949 0.87695 0.86514 0.81064 1.90519 1.85982 1.17962 1.54426 1.42042 1.05270 1.08623 1.67555 1.18991 0.82356 0.94555 1.49683 0.92779 1.26115 0.93937 1.05218 0.96189 1.69805 0.99653 1.37977 1.50225 0.85355 0.79796 0.76205 0.80088 1.17956 1.20179 1.15573 1.22220 0.85618 0.96657 1.02708 1.21804 1.00547 0.97035 0.95476 0.87270 0.88277 0.90497 0.91040 0.92507 0.91915 0.92508 0.90377 0.92792 0.89986 0.74735 0.91291 0.91701 0.93319 0.95277 0.92318 0.90844 0.85469 0.77534 0.91208 0.93888 0.87855 0.87950 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.02 12.50 67.78 0.85 -1.17 16 2 C -0.13 -1.67 4.79 -16.48 -0.08 -1.75 16 3 C -0.12 -1.33 10.03 71.24 0.71 -0.61 16 4 C -0.07 -1.10 4.21 29.85 0.13 -0.97 16 5 C -0.10 -1.37 2.71 -11.54 -0.03 -1.40 16 6 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 7 C -0.14 -1.27 8.72 71.98 0.63 -0.64 16 8 C 0.51 10.82 7.12 87.66 0.62 11.44 16 9 O -0.59 -18.08 15.58 -3.04 -0.05 -18.13 16 10 N -0.71 -12.18 4.97 -442.15 -2.20 -14.38 16 11 C 0.15 3.23 2.52 45.07 0.11 3.34 16 12 C -0.11 -3.22 5.67 30.65 0.17 -3.05 16 13 C 0.06 1.99 5.10 86.33 0.44 2.43 16 14 N -0.53 -15.81 4.40 -900.92 -3.96 -19.77 16 15 C 0.05 1.66 5.45 85.56 0.47 2.12 16 16 C 0.45 20.48 7.46 87.66 0.65 21.13 16 17 O -0.60 -33.68 13.90 -3.07 -0.04 -33.72 16 18 N -0.59 -28.16 5.09 -306.98 -1.56 -29.72 16 19 C -0.33 -19.32 10.16 84.04 0.85 -18.46 16 20 H 0.05 3.82 7.39 -2.91 -0.02 3.79 16 21 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 22 N -0.94 -56.97 13.96 21.66 0.30 -56.67 16 23 Si 0.97 39.05 27.74 68.60 1.90 40.95 16 24 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 25 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.23 -7.92 6.52 99.48 0.65 -7.27 16 27 C 0.06 1.07 5.46 86.32 0.47 1.54 16 28 C -0.11 -1.77 5.57 30.64 0.17 -1.60 16 29 H 0.11 0.89 8.04 -2.91 -0.02 0.87 16 30 H 0.10 1.01 7.99 -2.91 -0.02 0.99 16 31 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.65 8.06 -2.39 -0.02 0.63 16 33 H 0.06 0.70 8.08 -2.39 -0.02 0.68 16 34 H 0.06 1.18 7.99 -2.39 -0.02 1.16 16 35 H 0.06 1.19 7.91 -2.38 -0.02 1.17 16 36 H 0.08 0.44 7.56 -2.39 -0.02 0.42 16 37 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.08 0.62 6.52 -2.39 -0.02 0.60 16 39 H 0.42 4.41 8.02 -92.71 -0.74 3.67 16 40 H 0.07 1.73 7.58 -2.39 -0.02 1.71 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 42 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.06 2.52 5.78 -2.39 -0.01 2.50 16 45 H 0.07 1.95 8.12 -2.38 -0.02 1.93 16 46 H 0.13 3.03 7.99 -2.39 -0.02 3.01 16 47 H 0.39 15.25 5.76 -92.71 -0.53 14.71 16 48 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 49 H 0.04 0.77 8.14 -2.39 -0.02 0.76 16 50 H 0.10 1.56 8.02 -2.39 -0.02 1.54 16 51 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -82.76 411.74 0.60 -82.15 By element: Atomic # 1 Polarization: 37.80 SS G_CDS: -0.43 Total: 37.37 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 6.64 Total: 11.91 kcal Atomic # 7 Polarization: -113.12 SS G_CDS: -7.42 Total: -120.54 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: -0.09 Total: -51.85 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 1.90 Total: 40.95 kcal Total: -82.76 0.60 -82.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228779008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.998 kcal (2) G-P(sol) polarization free energy of solvation -82.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds