Wall clock time and date at job start Tue Mar 31 2020 20:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46936 * 2 1 4 4 C 1.50700 * 109.46983 * 240.00298 * 2 1 3 5 5 O 1.21283 * 119.99977 * 240.00288 * 4 2 1 6 6 N 1.34775 * 120.00260 * 59.99822 * 4 2 1 7 7 C 1.46504 * 119.99947 * 0.02562 * 6 4 2 8 8 C 1.46501 * 120.00331 * 179.97438 * 6 4 2 9 9 C 1.52996 * 109.47388 * 270.00352 * 8 6 4 10 10 H 1.09002 * 112.95784 * 74.66659 * 9 8 6 11 11 C 1.53936 * 113.76066 * 206.31303 * 9 8 6 12 12 C 1.53934 * 86.34026 * 138.14755 * 11 9 8 13 13 N 1.47960 * 113.85843 * 302.92516 * 9 8 6 14 14 C 1.46895 * 111.00299 * 108.08798 * 13 9 8 15 15 C 1.50702 * 109.47319 * 169.99821 * 14 13 9 16 16 O 1.21296 * 119.99837 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00101 * 180.02562 * 15 14 13 18 18 C 1.37101 * 119.99796 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00167 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99236 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00890 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99421 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47097 * 60.00097 * 22 20 18 24 24 H 1.48500 * 109.47331 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47307 * 300.00324 * 22 20 18 26 26 C 1.52999 * 109.47329 * 120.00293 * 2 1 3 27 27 C 1.53780 * 113.61337 * 277.49804 * 26 2 1 28 28 C 1.53776 * 87.08113 * 220.01745 * 27 26 2 29 29 C 1.53777 * 113.61543 * 179.97438 * 26 2 1 30 30 H 1.08996 * 109.47355 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47070 * 299.99920 * 1 2 3 32 32 H 1.09007 * 109.47216 * 59.99628 * 1 2 3 33 33 H 1.08997 * 109.46896 * 269.99771 * 7 6 4 34 34 H 1.08999 * 109.46971 * 29.99630 * 7 6 4 35 35 H 1.08996 * 109.47272 * 149.99730 * 7 6 4 36 36 H 1.09001 * 109.46746 * 150.00111 * 8 6 4 37 37 H 1.09002 * 109.46785 * 30.00450 * 8 6 4 38 38 H 1.08994 * 113.73386 * 252.51241 * 11 9 8 39 39 H 1.09001 * 113.73268 * 23.78878 * 11 9 8 40 40 H 1.08995 * 113.76003 * 90.60314 * 12 11 9 41 41 H 1.09005 * 113.75543 * 221.85202 * 12 11 9 42 42 H 1.08998 * 109.46792 * 289.99621 * 14 13 9 43 43 H 1.08997 * 109.47432 * 49.99817 * 14 13 9 44 44 H 0.97002 * 119.99977 * 359.97438 * 17 15 14 45 45 H 0.96994 * 120.00614 * 179.97438 * 21 20 18 46 46 H 1.08999 * 112.84637 * 48.80111 * 26 2 1 47 47 H 1.09002 * 113.61552 * 334.56438 * 27 26 2 48 48 H 1.09002 * 113.61892 * 105.46915 * 27 26 2 49 49 H 1.09004 * 113.61421 * 270.88692 * 28 27 26 50 50 H 1.09003 * 113.61761 * 139.98037 * 28 27 26 51 51 H 1.08993 * 113.61513 * 254.52738 * 29 26 2 52 52 H 1.09000 * 113.61073 * 25.43790 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7295 -1.6965 -1.1193 6 7 1.7067 -0.2499 -2.4546 7 6 0.8649 0.9416 -2.5890 8 6 2.1954 -0.9401 -3.6508 9 6 3.5430 -0.3472 -4.0670 10 1 4.3627 -0.6586 -3.4195 11 6 3.8484 -0.4947 -5.5685 12 6 4.3777 0.9493 -5.5020 13 7 3.5034 1.1102 -4.3192 14 6 4.1921 1.8482 -3.2520 15 6 4.3474 3.2910 -3.6585 16 8 3.9261 3.6674 -4.7318 17 7 4.9552 4.1629 -2.8297 18 6 5.0960 5.4757 -3.1993 19 1 4.7202 5.8110 -4.1546 20 6 5.7222 6.3746 -2.3446 21 7 6.1799 5.9665 -1.1823 22 14 5.9146 8.1631 -2.8484 23 1 4.5743 8.7598 -3.0773 24 1 6.6114 8.9090 -1.7698 25 1 6.7117 8.2421 -4.0989 26 6 2.0400 -0.7213 1.2492 27 6 2.0720 0.1674 2.5037 28 6 3.4107 -0.5053 2.8502 29 6 3.5738 -0.7774 1.3451 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.1832 0.6440 -2.6221 34 1 1.0287 1.6003 -1.7361 35 1 1.1227 1.4668 -3.5086 36 1 1.4775 -0.8148 -4.4613 37 1 2.3169 -2.0014 -3.4338 38 1 4.6179 -1.2343 -5.7891 39 1 2.9587 -0.6077 -6.1881 40 1 5.4414 1.0170 -5.2743 41 1 4.0851 1.5638 -6.3534 42 1 3.6069 1.7902 -2.3343 43 1 5.1759 1.4102 -3.0839 44 1 5.2924 3.8618 -1.9715 45 1 6.6173 6.5940 -0.5859 46 1 1.5574 -1.6856 1.4078 47 1 2.1621 1.2311 2.2832 48 1 1.2759 -0.0524 3.2151 49 1 3.3027 -1.4104 3.4480 50 1 4.1540 0.1829 3.2528 51 1 3.9896 -1.7597 1.1213 52 1 4.0746 0.0279 0.8076 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235741429.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:02 Heat of formation + Delta-G solvation = -13.466859 kcal Electronic energy + Delta-G solvation = -31180.721841 eV Core-core repulsion = 27182.205756 eV Total energy + Delta-G solvation = -3998.516085 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.66777 -39.75440 -38.22328 -37.61685 -35.39305 -33.92419 -33.11774 -31.34578 -30.55354 -28.72810 -26.75532 -25.87393 -25.71955 -25.34655 -23.97494 -23.64745 -22.03438 -19.76049 -19.38875 -19.23403 -18.89656 -17.90041 -16.91028 -16.41374 -16.01827 -15.85976 -15.56157 -15.22173 -14.89473 -14.61653 -14.42518 -13.90707 -13.84829 -13.72275 -13.60676 -13.37381 -12.84540 -12.63433 -12.49831 -12.36712 -12.29961 -12.19223 -11.79702 -11.69175 -11.65108 -11.54954 -11.39723 -11.31437 -11.25760 -11.04452 -10.73816 -10.56508 -10.49389 -10.44522 -10.37173 -10.21727 -10.10594 -9.50434 -9.44768 -8.85892 -8.36428 -8.18765 -7.97366 -6.42558 -3.83656 2.72019 3.03329 3.18520 3.24509 3.28620 3.88984 4.03230 4.22940 4.33411 4.56673 4.60830 4.64094 4.82021 4.90277 4.91219 5.02140 5.11117 5.11687 5.22851 5.23897 5.25280 5.35066 5.42636 5.48939 5.57061 5.58831 5.63529 5.66983 5.72350 5.77066 5.78433 5.79863 5.83907 5.85002 5.89392 5.89793 5.95119 6.09484 6.12454 6.17758 6.27060 6.27993 6.38035 6.50774 6.54292 6.70558 7.27467 7.47548 7.53519 8.04338 8.26648 8.60248 9.16714 9.53088 10.04861 10.75077 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009017 B = 0.003848 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.644590 B = 7274.831398 C = 9338.831557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.102 4.102 3 H 0.097 0.903 4 C 0.517 3.483 5 O -0.541 6.541 6 N -0.605 5.605 7 C 0.075 3.925 8 C 0.140 3.860 9 C 0.008 3.992 10 H 0.078 0.922 11 C -0.140 4.140 12 C 0.020 3.980 13 N -0.443 5.443 14 C 0.017 3.983 15 C 0.444 3.556 16 O -0.579 6.579 17 N -0.565 5.565 18 C -0.299 4.299 19 H 0.102 0.898 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C -0.087 4.087 27 C -0.136 4.136 28 C -0.147 4.147 29 C -0.122 4.122 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.049 0.951 44 H 0.391 0.609 45 H 0.272 0.728 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.064 0.936 49 H 0.076 0.924 50 H 0.066 0.934 51 H 0.070 0.930 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.484 -14.934 3.417 18.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.124 4.124 3 H 0.115 0.885 4 C 0.306 3.694 5 O -0.418 6.418 6 N -0.337 5.337 7 C -0.068 4.068 8 C 0.016 3.984 9 C -0.102 4.102 10 H 0.096 0.904 11 C -0.179 4.179 12 C -0.108 4.108 13 N -0.166 5.166 14 C -0.116 4.116 15 C 0.230 3.770 16 O -0.463 6.463 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.178 4.178 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.105 4.105 27 C -0.173 4.173 28 C -0.184 4.184 29 C -0.160 4.160 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.100 0.900 43 H 0.067 0.933 44 H 0.224 0.776 45 H 0.082 0.918 46 H 0.108 0.892 47 H 0.101 0.899 48 H 0.083 0.917 49 H 0.094 0.906 50 H 0.085 0.915 51 H 0.089 0.911 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.931 -14.724 2.859 17.989 hybrid contribution 1.243 0.630 0.634 1.531 sum -8.688 -14.094 3.493 16.921 Atomic orbital electron populations 1.22004 0.93156 1.02585 1.03372 1.21353 0.97461 1.00666 0.92883 0.88455 1.20695 0.79858 0.84452 0.84430 1.90655 1.38008 1.26637 1.86511 1.47723 1.51192 1.29298 1.05485 1.22057 0.93236 0.86857 1.04661 1.21350 0.93954 0.96411 0.86638 1.23956 0.98144 0.91391 0.96751 0.90414 1.23416 1.01653 0.97605 0.95199 1.23657 0.95995 0.94990 0.96195 1.68303 1.40237 1.04530 1.03502 1.22378 0.97697 0.95093 0.96391 1.19703 0.84210 0.86581 0.86552 1.90516 1.53141 1.79028 1.23599 1.41878 1.51270 1.08738 1.18248 1.19631 1.35443 0.83729 1.04068 0.88031 1.25247 0.96851 1.00463 0.95279 1.69600 1.39246 1.36385 1.09085 0.85938 0.78630 0.81753 0.78017 1.19887 1.20968 1.19937 1.22319 0.97072 0.98660 0.92478 1.22982 0.97744 0.99455 0.97158 1.22857 0.97725 1.00565 0.97300 1.22793 0.95580 1.02411 0.95190 0.92483 0.91560 0.90961 0.92879 0.91206 0.88985 0.90112 0.89840 0.91269 0.89212 0.91896 0.88823 0.89965 0.93339 0.77600 0.91819 0.89232 0.89923 0.91722 0.90551 0.91490 0.91102 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.82 37.16 0.33 -1.03 16 2 C -0.10 -1.12 1.67 -91.77 -0.15 -1.28 16 3 H 0.10 1.10 7.20 -51.93 -0.37 0.73 16 4 C 0.52 6.83 6.88 -10.99 -0.08 6.75 16 5 O -0.54 -8.60 14.42 5.55 0.08 -8.52 16 6 N -0.60 -7.34 2.81 -181.57 -0.51 -7.85 16 7 C 0.07 0.83 8.49 59.85 0.51 1.33 16 8 C 0.14 1.65 5.57 -4.04 -0.02 1.62 16 9 C 0.01 0.11 3.58 -66.66 -0.24 -0.13 16 10 H 0.08 1.13 7.79 -51.93 -0.40 0.72 16 11 C -0.14 -1.64 7.84 -25.80 -0.20 -1.84 16 12 C 0.02 0.31 6.75 -2.77 -0.02 0.29 16 13 N -0.44 -7.10 4.61 -232.13 -1.07 -8.17 16 14 C 0.02 0.30 5.31 -4.98 -0.03 0.27 16 15 C 0.44 10.41 7.59 -10.98 -0.08 10.33 16 16 O -0.58 -15.35 15.13 5.54 0.08 -15.27 16 17 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 18 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 19 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 20 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 21 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 22 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 C -0.09 -0.94 2.72 -89.81 -0.24 -1.19 16 27 C -0.14 -1.32 7.63 -25.92 -0.20 -1.52 16 28 C -0.15 -1.50 8.08 -25.90 -0.21 -1.71 16 29 C -0.12 -1.48 6.19 -25.90 -0.16 -1.64 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.60 4.53 -51.93 -0.24 0.36 16 33 H 0.05 0.47 6.95 -51.93 -0.36 0.11 16 34 H 0.07 0.76 6.01 -51.93 -0.31 0.45 16 35 H 0.09 1.21 7.24 -51.93 -0.38 0.83 16 36 H 0.08 0.84 7.81 -51.93 -0.41 0.44 16 37 H 0.08 1.00 7.42 -51.93 -0.39 0.61 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.94 7.92 -51.93 -0.41 0.53 16 40 H 0.06 1.00 7.78 -51.93 -0.40 0.60 16 41 H 0.09 1.58 8.09 -51.93 -0.42 1.16 16 42 H 0.08 1.43 8.06 -51.93 -0.42 1.01 16 43 H 0.05 0.86 7.69 -51.93 -0.40 0.46 16 44 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 45 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.08 0.82 7.96 -51.93 -0.41 0.41 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.07 0.93 7.96 -51.93 -0.41 0.52 16 52 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 407.38 15.07 6.14 6.14 Total: -1.00 -31.40 407.38 -9.62 -41.02 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -8.95 Total: 12.46 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -1.04 Total: 2.36 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.91 Total: -54.12 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: 0.16 Total: -23.79 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.40 -9.62 -41.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235741429.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.556 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds