Wall clock time and date at job start Tue Mar 31 2020 20:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46936 * 2 1 4 4 C 1.50700 * 109.46983 * 240.00298 * 2 1 3 5 5 O 1.21283 * 119.99977 * 240.00288 * 4 2 1 6 6 N 1.34775 * 120.00260 * 59.99822 * 4 2 1 7 7 C 1.46504 * 119.99947 * 0.02562 * 6 4 2 8 8 C 1.46501 * 120.00331 * 179.97438 * 6 4 2 9 9 C 1.52996 * 109.47388 * 270.00352 * 8 6 4 10 10 H 1.09002 * 112.95784 * 74.66659 * 9 8 6 11 11 C 1.53936 * 113.76066 * 206.31303 * 9 8 6 12 12 C 1.53934 * 86.34026 * 138.14755 * 11 9 8 13 13 N 1.47960 * 113.85843 * 302.92516 * 9 8 6 14 14 C 1.46895 * 111.00299 * 108.08798 * 13 9 8 15 15 C 1.50702 * 109.47319 * 169.99821 * 14 13 9 16 16 O 1.21296 * 119.99837 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00101 * 180.02562 * 15 14 13 18 18 C 1.37101 * 119.99796 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00167 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99236 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00890 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99421 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47097 * 60.00097 * 22 20 18 24 24 H 1.48500 * 109.47331 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47307 * 300.00324 * 22 20 18 26 26 C 1.52999 * 109.47329 * 120.00293 * 2 1 3 27 27 C 1.53780 * 113.61337 * 277.49804 * 26 2 1 28 28 C 1.53776 * 87.08113 * 220.01745 * 27 26 2 29 29 C 1.53777 * 113.61543 * 179.97438 * 26 2 1 30 30 H 1.08996 * 109.47355 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47070 * 299.99920 * 1 2 3 32 32 H 1.09007 * 109.47216 * 59.99628 * 1 2 3 33 33 H 1.08997 * 109.46896 * 269.99771 * 7 6 4 34 34 H 1.08999 * 109.46971 * 29.99630 * 7 6 4 35 35 H 1.08996 * 109.47272 * 149.99730 * 7 6 4 36 36 H 1.09001 * 109.46746 * 150.00111 * 8 6 4 37 37 H 1.09002 * 109.46785 * 30.00450 * 8 6 4 38 38 H 1.08994 * 113.73386 * 252.51241 * 11 9 8 39 39 H 1.09001 * 113.73268 * 23.78878 * 11 9 8 40 40 H 1.08995 * 113.76003 * 90.60314 * 12 11 9 41 41 H 1.09005 * 113.75543 * 221.85202 * 12 11 9 42 42 H 1.08998 * 109.46792 * 289.99621 * 14 13 9 43 43 H 1.08997 * 109.47432 * 49.99817 * 14 13 9 44 44 H 0.97002 * 119.99977 * 359.97438 * 17 15 14 45 45 H 0.96994 * 120.00614 * 179.97438 * 21 20 18 46 46 H 1.08999 * 112.84637 * 48.80111 * 26 2 1 47 47 H 1.09002 * 113.61552 * 334.56438 * 27 26 2 48 48 H 1.09002 * 113.61892 * 105.46915 * 27 26 2 49 49 H 1.09004 * 113.61421 * 270.88692 * 28 27 26 50 50 H 1.09003 * 113.61761 * 139.98037 * 28 27 26 51 51 H 1.08993 * 113.61513 * 254.52738 * 29 26 2 52 52 H 1.09000 * 113.61073 * 25.43790 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7295 -1.6965 -1.1193 6 7 1.7067 -0.2499 -2.4546 7 6 0.8649 0.9416 -2.5890 8 6 2.1954 -0.9401 -3.6508 9 6 3.5430 -0.3472 -4.0670 10 1 4.3627 -0.6586 -3.4195 11 6 3.8484 -0.4947 -5.5685 12 6 4.3777 0.9493 -5.5020 13 7 3.5034 1.1102 -4.3192 14 6 4.1921 1.8482 -3.2520 15 6 4.3474 3.2910 -3.6585 16 8 3.9261 3.6674 -4.7318 17 7 4.9552 4.1629 -2.8297 18 6 5.0960 5.4757 -3.1993 19 1 4.7202 5.8110 -4.1546 20 6 5.7222 6.3746 -2.3446 21 7 6.1799 5.9665 -1.1823 22 14 5.9146 8.1631 -2.8484 23 1 4.5743 8.7598 -3.0773 24 1 6.6114 8.9090 -1.7698 25 1 6.7117 8.2421 -4.0989 26 6 2.0400 -0.7213 1.2492 27 6 2.0720 0.1674 2.5037 28 6 3.4107 -0.5053 2.8502 29 6 3.5738 -0.7774 1.3451 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.1832 0.6440 -2.6221 34 1 1.0287 1.6003 -1.7361 35 1 1.1227 1.4668 -3.5086 36 1 1.4775 -0.8148 -4.4613 37 1 2.3169 -2.0014 -3.4338 38 1 4.6179 -1.2343 -5.7891 39 1 2.9587 -0.6077 -6.1881 40 1 5.4414 1.0170 -5.2743 41 1 4.0851 1.5638 -6.3534 42 1 3.6069 1.7902 -2.3343 43 1 5.1759 1.4102 -3.0839 44 1 5.2924 3.8618 -1.9715 45 1 6.6173 6.5940 -0.5859 46 1 1.5574 -1.6856 1.4078 47 1 2.1621 1.2311 2.2832 48 1 1.2759 -0.0524 3.2151 49 1 3.3027 -1.4104 3.4480 50 1 4.1540 0.1829 3.2528 51 1 3.9896 -1.7597 1.1213 52 1 4.0746 0.0279 0.8076 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235741429.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:01 Heat of formation + Delta-G solvation = -33.387164 kcal Electronic energy + Delta-G solvation = -31181.585650 eV Core-core repulsion = 27182.205756 eV Total energy + Delta-G solvation = -3999.379894 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.74446 -40.95473 -39.59896 -39.01066 -36.44091 -35.94880 -33.99365 -33.33878 -31.99137 -29.78838 -27.68521 -27.50618 -26.73291 -26.18935 -25.31302 -25.01728 -22.96744 -21.12442 -20.76961 -20.33663 -19.92445 -19.88950 -17.96166 -17.70757 -17.31740 -17.19007 -16.83643 -16.46514 -16.14747 -15.99513 -15.71723 -15.60537 -15.20226 -14.87355 -14.72611 -14.45195 -14.06970 -13.75414 -13.71177 -13.53476 -13.42434 -13.27884 -13.09673 -13.00585 -12.87095 -12.68961 -12.57144 -12.46291 -12.40102 -12.34140 -12.15186 -12.11974 -11.88171 -11.68442 -11.49627 -11.41820 -11.28257 -10.95667 -10.45410 -10.40319 -10.04012 -9.85559 -9.39308 -8.47683 -5.97037 1.38376 1.40619 1.51551 1.70294 2.00985 2.07254 2.27394 2.79562 3.17746 3.28271 3.43972 3.61139 3.72267 3.76097 3.80494 3.95789 4.06484 4.15740 4.19228 4.22167 4.27795 4.31389 4.33763 4.43425 4.44606 4.45019 4.50119 4.65364 4.68533 4.84406 4.85772 4.85975 4.88169 4.90284 4.93543 4.97235 5.04148 5.09792 5.11290 5.18681 5.25223 5.33980 5.37446 5.40302 5.41177 5.61315 5.63801 5.89504 6.06032 6.48821 6.56975 7.10291 7.25625 7.52279 8.07329 8.69550 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009017 B = 0.003848 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.644590 B = 7274.831398 C = 9338.831557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 H 0.093 0.907 4 C 0.512 3.488 5 O -0.573 6.573 6 N -0.604 5.604 7 C 0.077 3.923 8 C 0.140 3.860 9 C 0.013 3.987 10 H 0.065 0.935 11 C -0.115 4.115 12 C 0.008 3.992 13 N -0.451 5.451 14 C 0.034 3.966 15 C 0.445 3.555 16 O -0.611 6.611 17 N -0.574 5.574 18 C -0.332 4.332 19 H 0.080 0.920 20 C -0.012 4.012 21 N -0.921 5.921 22 Si 0.992 3.008 23 H -0.270 1.270 24 H -0.271 1.271 25 H -0.272 1.272 26 C -0.084 4.084 27 C -0.127 4.127 28 C -0.143 4.143 29 C -0.131 4.131 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.053 0.947 44 H 0.393 0.607 45 H 0.278 0.722 46 H 0.090 0.910 47 H 0.079 0.921 48 H 0.083 0.917 49 H 0.088 0.912 50 H 0.065 0.935 51 H 0.053 0.947 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.787 -15.331 3.864 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 H 0.111 0.889 4 C 0.302 3.698 5 O -0.452 6.452 6 N -0.335 5.335 7 C -0.066 4.066 8 C 0.017 3.983 9 C -0.097 4.097 10 H 0.083 0.917 11 C -0.153 4.153 12 C -0.121 4.121 13 N -0.175 5.175 14 C -0.098 4.098 15 C 0.232 3.768 16 O -0.496 6.496 17 N -0.211 5.211 18 C -0.461 4.461 19 H 0.098 0.902 20 C -0.211 4.211 21 N -0.562 5.562 22 Si 0.816 3.184 23 H -0.195 1.195 24 H -0.196 1.196 25 H -0.198 1.198 26 C -0.103 4.103 27 C -0.164 4.164 28 C -0.180 4.180 29 C -0.168 4.168 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.127 0.873 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.109 0.891 43 H 0.071 0.929 44 H 0.226 0.774 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.098 0.902 48 H 0.101 0.899 49 H 0.107 0.893 50 H 0.084 0.916 51 H 0.072 0.928 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.245 -15.129 3.310 19.139 hybrid contribution 1.668 0.713 0.455 1.870 sum -9.577 -14.416 3.765 17.712 Atomic orbital electron populations 1.21979 0.91140 1.02965 1.04414 1.21370 0.99077 0.99898 0.91841 0.88930 1.21106 0.79348 0.84160 0.85235 1.90640 1.39440 1.28163 1.86987 1.47808 1.50969 1.29359 1.05411 1.22093 0.94521 0.86352 1.03597 1.21404 0.93516 0.96257 0.87092 1.23962 0.98742 0.89175 0.97844 0.91701 1.23331 1.02689 0.95209 0.94039 1.23673 0.95451 0.97607 0.95326 1.68341 1.39963 1.06188 1.02959 1.22168 0.98453 0.91763 0.97378 1.20538 0.82407 0.88251 0.85604 1.90486 1.54071 1.80165 1.24917 1.41955 1.51976 1.08562 1.18632 1.19616 1.37259 0.85274 1.03978 0.90164 1.26036 0.95833 1.04225 0.95033 1.69671 1.39128 1.37809 1.09625 0.85000 0.78705 0.76772 0.77942 1.19470 1.19563 1.19767 1.22309 0.95785 0.99029 0.93145 1.22928 0.97868 0.98942 0.96678 1.22870 0.98103 1.01153 0.95868 1.22765 0.96618 1.00725 0.96740 0.92374 0.90169 0.90289 0.90115 0.91206 0.90944 0.88205 0.89692 0.89071 0.87288 0.92873 0.90693 0.89145 0.92853 0.77407 0.91304 0.89202 0.90189 0.89850 0.89336 0.91593 0.92790 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.82 71.98 0.64 -1.65 16 2 C -0.10 -2.11 1.67 -11.54 -0.02 -2.13 16 3 H 0.09 2.04 7.20 -2.39 -0.02 2.02 16 4 C 0.51 13.17 6.88 87.66 0.60 13.77 16 5 O -0.57 -18.18 14.42 -3.04 -0.04 -18.22 16 6 N -0.60 -13.91 2.81 -846.76 -2.38 -16.29 16 7 C 0.08 1.58 8.49 127.77 1.08 2.67 16 8 C 0.14 3.07 5.57 86.38 0.48 3.55 16 9 C 0.01 0.33 3.58 45.02 0.16 0.49 16 10 H 0.06 1.84 7.79 -2.39 -0.02 1.82 16 11 C -0.11 -2.45 7.84 31.24 0.24 -2.20 16 12 C 0.01 0.26 6.75 86.40 0.58 0.84 16 13 N -0.45 -14.35 4.61 -888.33 -4.10 -18.44 16 14 C 0.03 1.27 5.31 85.56 0.45 1.72 16 15 C 0.44 21.39 7.59 87.66 0.67 22.06 16 16 O -0.61 -33.31 15.13 -3.08 -0.05 -33.36 16 17 N -0.57 -29.87 5.29 -306.98 -1.62 -31.49 16 18 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 19 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 20 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 21 N -0.92 -50.00 13.05 21.66 0.28 -49.72 16 22 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 23 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 C -0.08 -1.76 2.72 -10.27 -0.03 -1.79 16 27 C -0.13 -2.27 7.63 31.12 0.24 -2.03 16 28 C -0.14 -2.80 8.08 31.13 0.25 -2.55 16 29 C -0.13 -3.23 6.19 31.13 0.19 -3.03 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.10 4.53 -2.38 -0.01 1.09 16 33 H 0.08 1.23 6.95 -2.39 -0.02 1.21 16 34 H 0.07 1.44 6.01 -2.39 -0.01 1.42 16 35 H 0.07 1.83 7.24 -2.39 -0.02 1.81 16 36 H 0.10 1.82 7.81 -2.39 -0.02 1.80 16 37 H 0.08 1.89 7.42 -2.39 -0.02 1.87 16 38 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.11 1.96 7.92 -2.39 -0.02 1.94 16 40 H 0.05 1.72 7.78 -2.39 -0.02 1.70 16 41 H 0.07 2.57 8.09 -2.38 -0.02 2.55 16 42 H 0.09 3.18 8.06 -2.39 -0.02 3.16 16 43 H 0.05 1.92 7.69 -2.39 -0.02 1.90 16 44 H 0.39 19.81 7.90 -92.71 -0.73 19.08 16 45 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 46 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 47 H 0.08 1.49 7.96 -2.39 -0.02 1.47 16 48 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.05 1.48 7.96 -2.39 -0.02 1.46 16 52 H 0.06 1.61 8.10 -2.39 -0.02 1.59 16 Total: -1.00 -68.83 407.38 1.13 -67.70 By element: Atomic # 1 Polarization: 43.28 SS G_CDS: 0.18 Total: 43.46 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 6.83 Total: 11.57 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -7.81 Total: -115.94 kcal Atomic # 8 Polarization: -51.49 SS G_CDS: -0.09 Total: -51.58 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -68.83 1.13 -67.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235741429.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.313 kcal (2) G-P(sol) polarization free energy of solvation -68.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds