Wall clock time and date at job start Tue Mar 31 2020 20:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47239 * 2 1 4 4 C 1.50702 * 109.47157 * 240.00216 * 2 1 3 5 5 O 1.21280 * 120.00069 * 239.99977 * 4 2 1 6 6 N 1.34786 * 119.99758 * 59.99982 * 4 2 1 7 7 C 1.46495 * 120.00018 * 0.02562 * 6 4 2 8 8 C 1.46499 * 119.99648 * 180.02562 * 6 4 2 9 9 C 1.53000 * 109.47247 * 89.99992 * 8 6 4 10 10 H 1.08997 * 112.74433 * 284.22473 * 9 8 6 11 11 C 1.53512 * 113.47599 * 153.38189 * 9 8 6 12 12 C 1.53513 * 83.57401 * 219.21297 * 11 9 8 13 13 N 1.47473 * 113.47672 * 54.99920 * 9 8 6 14 14 C 1.46902 * 110.99939 * 253.47210 * 13 9 8 15 15 C 1.50706 * 109.46971 * 169.99979 * 14 13 9 16 16 O 1.21290 * 119.99841 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99701 * 179.97438 * 15 14 13 18 18 C 1.37105 * 119.99872 * 179.97438 * 17 15 14 19 19 H 1.07998 * 119.99710 * 0.02562 * 18 17 15 20 20 C 1.38954 * 119.99814 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99693 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00141 * 359.73267 * 20 18 17 23 23 H 1.48502 * 109.46967 * 270.27331 * 22 20 18 24 24 H 1.48505 * 109.47170 * 30.26803 * 22 20 18 25 25 H 1.48498 * 109.47513 * 150.27417 * 22 20 18 26 26 C 1.52993 * 109.47082 * 120.00165 * 2 1 3 27 27 C 1.53779 * 113.61612 * 279.13790 * 26 2 1 28 28 C 1.53954 * 87.01805 * 220.04864 * 27 26 2 29 29 C 1.53780 * 113.61311 * 181.52716 * 26 2 1 30 30 H 1.09007 * 109.47354 * 59.99943 * 1 2 3 31 31 H 1.09000 * 109.47148 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47342 * 300.00181 * 1 2 3 33 33 H 1.09004 * 109.47028 * 269.99689 * 7 6 4 34 34 H 1.08999 * 109.47469 * 29.99435 * 7 6 4 35 35 H 1.09003 * 109.47053 * 149.99910 * 7 6 4 36 36 H 1.09002 * 109.47236 * 330.00042 * 8 6 4 37 37 H 1.09003 * 109.47238 * 210.00188 * 8 6 4 38 38 H 1.09010 * 114.16673 * 332.85079 * 11 9 8 39 39 H 1.08992 * 114.17713 * 105.37100 * 11 9 8 40 40 H 1.09011 * 113.46949 * 271.25512 * 12 11 9 41 41 H 1.08996 * 113.47834 * 140.79273 * 12 11 9 42 42 H 1.08991 * 109.47190 * 49.99937 * 14 13 9 43 43 H 1.09001 * 109.46767 * 289.99583 * 14 13 9 44 44 H 0.97004 * 120.00018 * 0.02562 * 17 15 14 45 45 H 0.96999 * 119.99859 * 179.72933 * 21 20 18 46 46 H 1.09002 * 112.84930 * 50.33358 * 26 2 1 47 47 H 1.08995 * 113.61200 * 334.56662 * 27 26 2 48 48 H 1.09000 * 113.61471 * 105.47246 * 27 26 2 49 49 H 1.09007 * 113.53883 * 270.80746 * 28 27 26 50 50 H 1.09005 * 113.74629 * 139.94739 * 28 27 26 51 51 H 1.09002 * 113.61428 * 254.52874 * 29 26 2 52 52 H 1.08997 * 113.61745 * 25.35232 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 0.8649 0.9416 -2.5890 8 6 2.1946 -0.9407 -3.6508 9 6 1.1863 -2.0136 -4.0670 10 1 1.2230 -2.8965 -3.4289 11 6 1.2240 -2.3393 -5.5667 12 6 -0.3016 -2.4136 -5.4130 13 7 -0.1778 -1.4910 -4.2692 14 6 -1.0643 -1.8939 -3.1694 15 6 -2.3696 -1.1483 -3.2774 16 8 -2.5442 -0.3593 -4.1819 17 7 -3.3431 -1.3591 -2.3695 18 6 -4.5303 -0.6804 -2.4674 19 1 -4.6855 0.0228 -3.2723 20 6 -5.5342 -0.8981 -1.5317 21 7 -6.6724 -0.2479 -1.6259 22 14 -5.2691 -2.1208 -0.1447 23 1 -5.7173 -3.4680 -0.5800 24 1 -3.8264 -2.1681 0.2045 25 1 -6.0526 -1.6987 1.0440 26 6 2.0400 -0.7213 1.2492 27 6 2.0343 0.1558 2.5123 28 6 3.3855 -0.4901 2.8693 29 6 3.5733 -0.7444 1.3643 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.1832 0.6441 -2.6222 34 1 1.0287 1.6003 -1.7361 35 1 1.1228 1.4669 -3.5086 36 1 3.1546 -1.4090 -3.4337 37 1 2.3159 -0.2221 -4.4614 38 1 1.5698 -1.5172 -6.1934 39 1 1.6985 -3.2912 -5.8050 40 1 -0.6622 -3.4041 -5.1350 41 1 -0.8443 -1.9884 -6.2573 42 1 -0.5902 -1.6601 -2.2163 43 1 -1.2523 -2.9660 -3.2285 44 1 -3.2035 -1.9904 -1.6463 45 1 -7.3747 -0.4028 -0.9749 46 1 1.5765 -1.6973 1.3932 47 1 2.1024 1.2232 2.3030 48 1 1.2341 -0.0895 3.2106 49 1 3.2899 -1.4027 3.4577 50 1 4.1094 0.2093 3.2876 51 1 4.0136 -1.7153 1.1371 52 1 4.0630 0.0758 0.8393 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235741433.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:06 Heat of formation + Delta-G solvation = -25.049444 kcal Electronic energy + Delta-G solvation = -31609.399220 eV Core-core repulsion = 27610.380877 eV Total energy + Delta-G solvation = -3999.018343 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.87378 -40.98300 -39.76798 -39.05852 -36.45840 -35.96846 -34.07372 -33.74215 -32.12639 -29.80329 -27.74588 -27.59216 -26.72821 -26.19690 -25.18679 -24.88996 -23.00539 -21.28461 -20.81735 -20.40050 -20.28076 -19.82890 -18.05214 -17.68158 -17.34616 -17.07066 -16.98139 -16.59777 -16.12607 -16.07112 -15.64291 -15.41260 -15.24796 -14.80435 -14.71472 -14.50391 -14.40732 -14.09723 -13.80926 -13.69003 -13.44060 -13.26077 -13.11634 -13.03131 -12.89650 -12.70645 -12.56702 -12.44644 -12.34832 -12.28550 -12.18349 -12.05254 -11.94669 -11.63600 -11.51504 -11.40220 -11.27416 -10.95877 -10.49224 -10.47652 -10.24140 -9.87046 -9.43939 -8.41323 -6.00897 1.27017 1.31171 1.39792 1.66030 1.94102 2.06597 2.20086 2.64462 3.13843 3.26678 3.41493 3.54208 3.70161 3.74810 3.80160 3.95348 4.03759 4.07399 4.15268 4.19499 4.24764 4.28082 4.28951 4.36115 4.39485 4.41951 4.45886 4.63042 4.68873 4.79888 4.81403 4.83303 4.84923 4.88435 4.92287 4.99018 5.00653 5.08472 5.11967 5.21402 5.23450 5.29331 5.36717 5.41832 5.52831 5.59031 5.63642 5.92487 6.04144 6.45609 6.59338 6.88692 7.22542 7.39434 7.96052 8.76181 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008619 B = 0.004637 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3247.700729 B = 6037.540558 C = 8470.960802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.093 4.093 3 H 0.113 0.887 4 C 0.513 3.487 5 O -0.569 6.569 6 N -0.603 5.603 7 C 0.086 3.914 8 C 0.135 3.865 9 C 0.010 3.990 10 H 0.072 0.928 11 C -0.112 4.112 12 C -0.008 4.008 13 N -0.450 5.450 14 C 0.022 3.978 15 C 0.462 3.538 16 O -0.598 6.598 17 N -0.594 5.594 18 C -0.321 4.321 19 H 0.059 0.941 20 C -0.008 4.008 21 N -0.932 5.932 22 Si 0.953 3.047 23 H -0.261 1.261 24 H -0.236 1.236 25 H -0.272 1.272 26 C -0.092 4.092 27 C -0.129 4.129 28 C -0.139 4.139 29 C -0.123 4.123 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.384 0.616 45 H 0.278 0.722 46 H 0.076 0.924 47 H 0.091 0.909 48 H 0.070 0.930 49 H 0.079 0.921 50 H 0.077 0.923 51 H 0.052 0.948 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.784 -3.032 5.032 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.114 4.114 3 H 0.130 0.870 4 C 0.303 3.697 5 O -0.448 6.448 6 N -0.335 5.335 7 C -0.057 4.057 8 C 0.012 3.988 9 C -0.101 4.101 10 H 0.090 0.910 11 C -0.150 4.150 12 C -0.137 4.137 13 N -0.173 5.173 14 C -0.110 4.110 15 C 0.249 3.751 16 O -0.481 6.481 17 N -0.236 5.236 18 C -0.450 4.450 19 H 0.077 0.923 20 C -0.207 4.207 21 N -0.573 5.573 22 Si 0.774 3.226 23 H -0.185 1.185 24 H -0.160 1.160 25 H -0.197 1.197 26 C -0.111 4.111 27 C -0.167 4.167 28 C -0.176 4.176 29 C -0.160 4.160 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.112 0.888 43 H 0.092 0.908 44 H 0.219 0.781 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.110 0.890 48 H 0.089 0.911 49 H 0.098 0.902 50 H 0.096 0.904 51 H 0.071 0.929 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 22.679 -2.223 4.482 23.224 hybrid contribution -0.964 -1.399 0.789 1.874 sum 21.715 -3.622 5.272 22.637 Atomic orbital electron populations 1.22029 0.93079 1.02228 1.04019 1.21340 0.97016 1.00979 0.92071 0.86956 1.21050 0.79320 0.84274 0.85085 1.90637 1.39648 1.27596 1.86939 1.47806 1.50724 1.29285 1.05638 1.21953 0.94027 0.86335 1.03343 1.21530 0.95987 0.94455 0.86859 1.23891 0.90738 0.97192 0.98253 0.91012 1.23106 0.94108 1.03948 0.93831 1.23865 0.98636 0.95463 0.95697 1.68749 1.01379 1.43497 1.03638 1.22394 0.92394 0.98067 0.98130 1.20539 0.85826 0.85527 0.83181 1.90538 1.81827 1.39586 1.36130 1.42080 1.13981 1.40384 1.27184 1.18969 0.91279 1.21966 1.12774 0.92266 1.25939 0.94310 0.99699 1.00749 1.69786 1.06126 1.43279 1.38081 0.85531 0.80343 0.78668 0.78089 1.18547 1.16005 1.19683 1.22331 0.96788 0.98820 0.93188 1.22998 0.97896 0.99593 0.96176 1.22856 0.97682 1.01138 0.95947 1.22749 0.95440 1.01269 0.96563 0.91590 0.93694 0.90129 0.93843 0.89691 0.90332 0.89581 0.88622 0.87719 0.88158 0.91046 0.91114 0.88793 0.90834 0.78136 0.91195 0.90597 0.89014 0.91102 0.90244 0.90448 0.92922 0.90696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 8.54 71.98 0.61 -3.02 16 2 C -0.09 -1.95 1.65 -11.54 -0.02 -1.97 16 3 H 0.11 1.93 7.24 -2.38 -0.02 1.91 16 4 C 0.51 12.87 6.89 87.66 0.60 13.47 16 5 O -0.57 -17.14 14.53 -3.03 -0.04 -17.18 16 6 N -0.60 -14.01 2.59 -846.74 -2.20 -16.20 16 7 C 0.09 1.99 8.38 127.77 1.07 3.06 16 8 C 0.13 2.85 5.60 86.38 0.48 3.33 16 9 C 0.01 0.22 3.35 42.19 0.14 0.36 16 10 H 0.07 1.75 7.91 -2.39 -0.02 1.73 16 11 C -0.11 -2.04 8.00 30.94 0.25 -1.80 16 12 C -0.01 -0.20 7.71 83.57 0.64 0.45 16 13 N -0.45 -13.36 4.85 -906.78 -4.39 -17.76 16 14 C 0.02 0.74 4.62 85.56 0.40 1.13 16 15 C 0.46 20.93 7.85 87.66 0.69 21.62 16 16 O -0.60 -32.59 16.01 -3.06 -0.05 -32.64 16 17 N -0.59 -28.19 5.09 -306.98 -1.56 -29.75 16 18 C -0.32 -18.57 10.16 84.04 0.85 -17.72 16 19 H 0.06 4.07 7.39 -2.91 -0.02 4.05 16 20 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 21 N -0.93 -55.63 13.96 21.66 0.30 -55.33 16 22 Si 0.95 39.13 27.74 68.60 1.90 41.03 16 23 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 24 H -0.24 -8.37 6.52 99.48 0.65 -7.72 16 25 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 26 C -0.09 -1.88 2.68 -10.27 -0.03 -1.91 16 27 C -0.13 -2.06 7.63 31.18 0.24 -1.83 16 28 C -0.14 -2.18 8.09 31.18 0.25 -1.93 16 29 C -0.12 -2.43 6.29 31.12 0.20 -2.23 16 30 H 0.07 1.70 4.53 -2.38 -0.01 1.69 16 31 H 0.04 1.15 7.85 -2.39 -0.02 1.13 16 32 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.04 1.32 6.02 -2.38 -0.01 1.31 16 34 H 0.08 1.58 6.01 -2.39 -0.01 1.57 16 35 H 0.08 1.68 7.89 -2.39 -0.02 1.66 16 36 H 0.09 1.81 7.42 -2.39 -0.02 1.79 16 37 H 0.10 1.75 7.63 -2.39 -0.02 1.73 16 38 H 0.10 1.73 7.94 -2.38 -0.02 1.71 16 39 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 1.74 7.42 -2.38 -0.02 1.72 16 41 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.09 2.96 7.26 -2.39 -0.02 2.94 16 43 H 0.07 2.19 7.30 -2.39 -0.02 2.17 16 44 H 0.38 15.65 5.76 -92.71 -0.53 15.12 16 45 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 46 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.09 1.27 7.99 -2.39 -0.02 1.25 16 48 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 50 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 51 H 0.05 1.23 8.00 -2.39 -0.02 1.21 16 52 H 0.07 1.44 8.10 -2.39 -0.02 1.42 16 Total: -1.00 -74.83 403.38 1.13 -73.69 By element: Atomic # 1 Polarization: 42.77 SS G_CDS: 0.32 Total: 43.09 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 6.85 Total: 11.05 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -7.85 Total: -119.04 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -0.09 Total: -49.82 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 1.90 Total: 41.03 kcal Total: -74.83 1.13 -73.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235741433.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.644 kcal (2) G-P(sol) polarization free energy of solvation -74.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds