Wall clock time and date at job start Tue Mar 31 2020 20:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.47407 * 120.00263 * 2 1 3 5 5 O 1.21274 * 120.00242 * 119.99807 * 4 2 1 6 6 N 1.34783 * 119.99743 * 299.99895 * 4 2 1 7 7 C 1.46497 * 119.99788 * 0.02562 * 6 4 2 8 8 C 1.46493 * 119.99791 * 179.97438 * 6 4 2 9 9 C 1.53001 * 109.46876 * 90.00582 * 8 6 4 10 10 H 1.09000 * 112.74398 * 284.22541 * 9 8 6 11 11 C 1.53512 * 113.47615 * 153.38138 * 9 8 6 12 12 C 1.53518 * 83.57285 * 219.20435 * 11 9 8 13 13 N 1.47479 * 113.47804 * 54.99862 * 9 8 6 14 14 C 1.46899 * 110.99919 * 253.46771 * 13 9 8 15 15 C 1.50692 * 109.47342 * 189.99695 * 14 13 9 16 16 O 1.21292 * 119.99959 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00483 * 180.02562 * 15 14 13 18 18 C 1.37091 * 120.00610 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99574 * 359.97438 * 18 17 15 20 20 C 1.38942 * 120.00659 * 180.02562 * 18 17 15 21 21 N 1.31415 * 119.99744 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00518 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47549 * 89.99601 * 22 20 18 24 24 H 1.48503 * 109.47230 * 209.99603 * 22 20 18 25 25 H 1.48505 * 109.47252 * 330.00028 * 22 20 18 26 26 C 1.53002 * 109.47127 * 240.00401 * 2 1 3 27 27 C 1.53781 * 113.61609 * 59.99617 * 26 2 1 28 28 C 1.53781 * 87.08070 * 139.98229 * 27 26 2 29 29 C 1.53786 * 87.17350 * 334.52830 * 28 27 26 30 30 H 1.08999 * 109.47130 * 300.00101 * 1 2 3 31 31 H 1.08999 * 109.47548 * 59.99888 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47367 * 90.00282 * 7 6 4 34 34 H 1.09004 * 109.47067 * 209.99694 * 7 6 4 35 35 H 1.08994 * 109.47410 * 329.99633 * 7 6 4 36 36 H 1.08998 * 109.47546 * 210.00047 * 8 6 4 37 37 H 1.09003 * 109.47573 * 330.00252 * 8 6 4 38 38 H 1.08997 * 114.17326 * 332.85048 * 11 9 8 39 39 H 1.09000 * 114.17051 * 105.56329 * 11 9 8 40 40 H 1.09001 * 113.47841 * 271.25534 * 12 11 9 41 41 H 1.09005 * 113.52951 * 140.79607 * 12 11 9 42 42 H 1.09002 * 109.47337 * 310.00473 * 14 13 9 43 43 H 1.09013 * 109.47012 * 69.99846 * 14 13 9 44 44 H 0.97002 * 119.99561 * 0.02562 * 17 15 14 45 45 H 0.96998 * 120.00462 * 179.97438 * 21 20 18 46 46 H 1.09003 * 112.90345 * 288.74671 * 26 2 1 47 47 H 1.08999 * 113.61181 * 25.43284 * 27 26 2 48 48 H 1.08998 * 113.61680 * 254.52836 * 27 26 2 49 49 H 1.09002 * 113.61445 * 89.11830 * 28 27 26 50 50 H 1.09002 * 113.61408 * 219.93560 * 28 27 26 51 51 H 1.08992 * 113.61675 * 140.02412 * 29 28 27 52 52 H 1.09000 * 113.60973 * 270.92699 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4546 7 6 0.8641 0.9408 2.5890 8 6 2.1947 -0.9409 3.6506 9 6 3.5426 -0.3489 4.0673 10 1 4.3628 -0.6782 3.4293 11 6 3.8367 -0.4936 5.5670 12 6 4.4165 0.9196 5.4138 13 7 3.5056 1.1114 4.2699 14 6 4.1819 1.8127 3.1704 15 6 4.3414 3.2684 3.5258 16 8 3.9324 3.6810 4.5905 17 7 4.9385 4.1119 2.6607 18 6 5.0841 5.4361 2.9842 19 1 4.7199 5.8035 3.9323 20 6 5.6991 6.3058 2.0921 21 7 6.1418 5.8589 0.9383 22 14 5.8968 8.1102 2.5326 23 1 7.1906 8.3098 3.2337 24 1 5.8743 8.9278 1.2931 25 1 4.7828 8.5278 3.4214 26 6 2.0400 -0.7212 -1.2493 27 6 1.5811 -0.0722 -2.5658 28 6 2.9921 -0.3571 -3.1067 29 6 3.4751 -0.3269 -1.6469 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.1838 0.6425 2.6226 34 1 1.1218 1.4664 3.5085 35 1 1.0272 1.5995 1.7360 36 1 1.4768 -0.8154 4.4611 37 1 2.3155 -2.0022 3.4334 38 1 2.9463 -0.5452 6.1935 39 1 4.5779 -1.2566 5.8049 40 1 5.4705 0.9288 5.1359 41 1 4.1974 1.5737 6.2577 42 1 5.1638 1.3690 3.0059 43 1 3.5862 1.7237 2.2618 44 1 5.2652 3.7820 1.8090 45 1 6.5708 6.4660 0.3152 46 1 1.8772 -1.7984 -1.2135 47 1 1.3551 0.9901 -2.4733 48 1 0.7966 -0.6299 -3.0773 49 1 3.0896 -1.3348 -3.5787 50 1 3.3969 0.4500 -3.7173 51 1 4.2187 -1.0900 -1.4172 52 1 3.7661 0.6659 -1.3038 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235741437.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:12 Heat of formation + Delta-G solvation = -11.625824 kcal Electronic energy + Delta-G solvation = -31182.583656 eV Core-core repulsion = 27184.147404 eV Total energy + Delta-G solvation = -3998.436252 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.72932 -39.85190 -38.28796 -37.67493 -35.40268 -33.92865 -33.07017 -31.35966 -30.61262 -28.70300 -26.79872 -25.97621 -25.77683 -25.25617 -23.86949 -23.70141 -22.02476 -19.79219 -19.40179 -19.25497 -18.94138 -17.90723 -16.90401 -16.41939 -16.03789 -15.85415 -15.60179 -15.17611 -14.90686 -14.61669 -14.42752 -13.94953 -13.84776 -13.74050 -13.62893 -13.35828 -12.86064 -12.62647 -12.53003 -12.46672 -12.25518 -12.23553 -11.90434 -11.66772 -11.59191 -11.52216 -11.37394 -11.32500 -11.25542 -11.07195 -10.76688 -10.55147 -10.44439 -10.39884 -10.34603 -10.22705 -10.15060 -9.52119 -9.50720 -8.89613 -8.37499 -8.23506 -7.97669 -6.42872 -3.83885 2.71607 3.04365 3.16187 3.25045 3.30648 3.88712 4.06195 4.26332 4.34262 4.54292 4.57157 4.60792 4.80256 4.84173 4.91475 5.02415 5.10281 5.13661 5.22444 5.25018 5.28346 5.35417 5.43687 5.47578 5.55947 5.57167 5.61518 5.66429 5.70685 5.74435 5.76177 5.78619 5.83093 5.85345 5.88260 5.89256 5.95370 6.06597 6.11229 6.13889 6.24765 6.26575 6.32911 6.49611 6.53878 6.66403 7.26989 7.47282 7.53558 8.04236 8.25932 8.59958 9.16620 9.52792 10.04561 10.74844 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008725 B = 0.003952 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.509479 B = 7082.448608 C = 9319.996626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.102 4.102 3 H 0.098 0.902 4 C 0.518 3.482 5 O -0.544 6.544 6 N -0.605 5.605 7 C 0.075 3.925 8 C 0.137 3.863 9 C 0.005 3.995 10 H 0.077 0.923 11 C -0.140 4.140 12 C 0.013 3.987 13 N -0.433 5.433 14 C 0.015 3.985 15 C 0.445 3.555 16 O -0.578 6.578 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.102 0.898 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C -0.086 4.086 27 C -0.135 4.135 28 C -0.143 4.143 29 C -0.134 4.134 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.050 0.950 43 H 0.083 0.917 44 H 0.391 0.609 45 H 0.271 0.729 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.064 0.936 49 H 0.076 0.924 50 H 0.067 0.933 51 H 0.068 0.932 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.710 -14.745 -2.959 17.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.123 4.123 3 H 0.116 0.884 4 C 0.306 3.694 5 O -0.421 6.421 6 N -0.337 5.337 7 C -0.068 4.068 8 C 0.014 3.986 9 C -0.106 4.106 10 H 0.095 0.905 11 C -0.178 4.178 12 C -0.116 4.116 13 N -0.156 5.156 14 C -0.117 4.117 15 C 0.230 3.770 16 O -0.462 6.462 17 N -0.202 5.202 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.105 4.105 27 C -0.173 4.173 28 C -0.181 4.181 29 C -0.171 4.171 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.109 0.891 42 H 0.068 0.932 43 H 0.101 0.899 44 H 0.224 0.776 45 H 0.081 0.919 46 H 0.112 0.888 47 H 0.100 0.900 48 H 0.083 0.917 49 H 0.095 0.905 50 H 0.085 0.915 51 H 0.087 0.913 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.170 -14.483 -2.403 17.859 hybrid contribution 1.287 0.581 -0.692 1.572 sum -8.883 -13.902 -3.095 16.785 Atomic orbital electron populations 1.22001 0.93095 1.02626 1.03386 1.21343 0.97474 1.00690 0.92828 0.88445 1.20701 0.79816 0.84384 0.84492 1.90651 1.38143 1.26760 1.86558 1.47719 1.51156 1.29298 1.05489 1.22059 0.93194 0.86856 1.04693 1.21408 0.94132 0.96448 0.86644 1.23902 0.98229 0.91613 0.96846 0.90472 1.23214 1.01676 0.97667 0.95244 1.23567 0.95655 0.95642 0.96763 1.68729 1.37892 1.04863 1.04078 1.22416 0.97851 0.95353 0.96079 1.19680 0.84235 0.86750 0.86333 1.90518 1.53325 1.77820 1.24552 1.41879 1.51830 1.08567 1.17886 1.19677 1.35824 0.83323 1.03972 0.87980 1.25248 0.96909 1.00522 0.95200 1.69613 1.39840 1.36545 1.08297 0.85876 0.78867 0.81845 0.77812 1.20437 1.20916 1.19408 1.22386 0.96439 0.99982 0.91710 1.22955 0.96943 1.01031 0.96352 1.22794 0.96778 1.01671 0.96837 1.22965 0.96550 1.01972 0.95641 0.90969 0.91478 0.92471 0.92873 0.88976 0.91177 0.90098 0.89934 0.88930 0.90882 0.91941 0.89114 0.93202 0.89884 0.77604 0.91879 0.88758 0.89982 0.91701 0.90489 0.91472 0.91340 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.63 37.16 0.32 -1.05 16 2 C -0.10 -1.14 1.67 -91.77 -0.15 -1.29 16 3 H 0.10 1.12 7.21 -51.93 -0.37 0.75 16 4 C 0.52 6.97 7.07 -10.98 -0.08 6.89 16 5 O -0.54 -8.89 15.42 5.56 0.09 -8.80 16 6 N -0.60 -7.43 2.70 -181.58 -0.49 -7.92 16 7 C 0.07 0.84 8.31 59.85 0.50 1.33 16 8 C 0.14 1.63 5.56 -4.05 -0.02 1.60 16 9 C 0.01 0.07 3.37 -71.44 -0.24 -0.17 16 10 H 0.08 1.12 7.77 -51.93 -0.40 0.72 16 11 C -0.14 -1.61 8.00 -26.20 -0.21 -1.82 16 12 C 0.01 0.19 6.71 -7.54 -0.05 0.14 16 13 N -0.43 -6.97 4.60 -237.94 -1.09 -8.06 16 14 C 0.02 0.28 5.31 -4.98 -0.03 0.25 16 15 C 0.44 10.44 7.62 -10.99 -0.08 10.36 16 16 O -0.58 -15.40 15.33 5.55 0.09 -15.32 16 17 N -0.56 -14.30 5.29 -10.97 -0.06 -14.36 16 18 C -0.30 -8.27 9.68 -14.94 -0.14 -8.41 16 19 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.46 13.05 55.50 0.72 -23.74 16 22 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 C -0.09 -0.96 2.54 -89.67 -0.23 -1.19 16 27 C -0.14 -1.27 6.68 -25.92 -0.17 -1.45 16 28 C -0.14 -1.43 8.07 -25.92 -0.21 -1.64 16 29 C -0.13 -1.59 7.63 -25.77 -0.20 -1.79 16 30 H 0.07 0.60 4.53 -51.93 -0.24 0.37 16 31 H 0.07 0.53 7.45 -51.93 -0.39 0.14 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.48 6.95 -51.93 -0.36 0.12 16 34 H 0.09 1.22 7.22 -51.93 -0.37 0.84 16 35 H 0.07 0.78 6.01 -51.93 -0.31 0.47 16 36 H 0.08 0.85 7.80 -51.93 -0.41 0.44 16 37 H 0.08 1.00 7.42 -51.93 -0.39 0.61 16 38 H 0.09 0.97 7.94 -51.93 -0.41 0.55 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.98 7.70 -51.93 -0.40 0.58 16 41 H 0.09 1.53 8.13 -51.93 -0.42 1.10 16 42 H 0.05 0.89 7.56 -51.93 -0.39 0.49 16 43 H 0.08 1.45 7.85 -51.92 -0.41 1.04 16 44 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.09 1.14 7.86 -51.93 -0.41 0.73 16 47 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 52 H 0.08 1.02 7.97 -51.93 -0.41 0.60 16 LS Contribution 407.30 15.07 6.14 6.14 Total: -1.00 -31.68 407.30 -9.61 -41.29 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -8.88 Total: 12.56 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -1.09 Total: 2.28 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.92 Total: -54.08 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: 0.17 Total: -24.12 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.68 -9.61 -41.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235741437.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.669 kcal (2) G-P(sol) polarization free energy of solvation -31.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds