Wall clock time and date at job start Tue Mar 31 2020 20:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.47407 * 120.00263 * 2 1 3 5 5 O 1.21274 * 120.00242 * 119.99807 * 4 2 1 6 6 N 1.34783 * 119.99743 * 299.99895 * 4 2 1 7 7 C 1.46497 * 119.99788 * 0.02562 * 6 4 2 8 8 C 1.46493 * 119.99791 * 179.97438 * 6 4 2 9 9 C 1.53001 * 109.46876 * 90.00582 * 8 6 4 10 10 H 1.09000 * 112.74398 * 284.22541 * 9 8 6 11 11 C 1.53512 * 113.47615 * 153.38138 * 9 8 6 12 12 C 1.53518 * 83.57285 * 219.20435 * 11 9 8 13 13 N 1.47479 * 113.47804 * 54.99862 * 9 8 6 14 14 C 1.46899 * 110.99919 * 253.46771 * 13 9 8 15 15 C 1.50692 * 109.47342 * 189.99695 * 14 13 9 16 16 O 1.21292 * 119.99959 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00483 * 180.02562 * 15 14 13 18 18 C 1.37091 * 120.00610 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99574 * 359.97438 * 18 17 15 20 20 C 1.38942 * 120.00659 * 180.02562 * 18 17 15 21 21 N 1.31415 * 119.99744 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00518 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47549 * 89.99601 * 22 20 18 24 24 H 1.48503 * 109.47230 * 209.99603 * 22 20 18 25 25 H 1.48505 * 109.47252 * 330.00028 * 22 20 18 26 26 C 1.53002 * 109.47127 * 240.00401 * 2 1 3 27 27 C 1.53781 * 113.61609 * 59.99617 * 26 2 1 28 28 C 1.53781 * 87.08070 * 139.98229 * 27 26 2 29 29 C 1.53786 * 87.17350 * 334.52830 * 28 27 26 30 30 H 1.08999 * 109.47130 * 300.00101 * 1 2 3 31 31 H 1.08999 * 109.47548 * 59.99888 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47367 * 90.00282 * 7 6 4 34 34 H 1.09004 * 109.47067 * 209.99694 * 7 6 4 35 35 H 1.08994 * 109.47410 * 329.99633 * 7 6 4 36 36 H 1.08998 * 109.47546 * 210.00047 * 8 6 4 37 37 H 1.09003 * 109.47573 * 330.00252 * 8 6 4 38 38 H 1.08997 * 114.17326 * 332.85048 * 11 9 8 39 39 H 1.09000 * 114.17051 * 105.56329 * 11 9 8 40 40 H 1.09001 * 113.47841 * 271.25534 * 12 11 9 41 41 H 1.09005 * 113.52951 * 140.79607 * 12 11 9 42 42 H 1.09002 * 109.47337 * 310.00473 * 14 13 9 43 43 H 1.09013 * 109.47012 * 69.99846 * 14 13 9 44 44 H 0.97002 * 119.99561 * 0.02562 * 17 15 14 45 45 H 0.96998 * 120.00462 * 179.97438 * 21 20 18 46 46 H 1.09003 * 112.90345 * 288.74671 * 26 2 1 47 47 H 1.08999 * 113.61181 * 25.43284 * 27 26 2 48 48 H 1.08998 * 113.61680 * 254.52836 * 27 26 2 49 49 H 1.09002 * 113.61445 * 89.11830 * 28 27 26 50 50 H 1.09002 * 113.61408 * 219.93560 * 28 27 26 51 51 H 1.08992 * 113.61675 * 140.02412 * 29 28 27 52 52 H 1.09000 * 113.60973 * 270.92699 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4546 7 6 0.8641 0.9408 2.5890 8 6 2.1947 -0.9409 3.6506 9 6 3.5426 -0.3489 4.0673 10 1 4.3628 -0.6782 3.4293 11 6 3.8367 -0.4936 5.5670 12 6 4.4165 0.9196 5.4138 13 7 3.5056 1.1114 4.2699 14 6 4.1819 1.8127 3.1704 15 6 4.3414 3.2684 3.5258 16 8 3.9324 3.6810 4.5905 17 7 4.9385 4.1119 2.6607 18 6 5.0841 5.4361 2.9842 19 1 4.7199 5.8035 3.9323 20 6 5.6991 6.3058 2.0921 21 7 6.1418 5.8589 0.9383 22 14 5.8968 8.1102 2.5326 23 1 7.1906 8.3098 3.2337 24 1 5.8743 8.9278 1.2931 25 1 4.7828 8.5278 3.4214 26 6 2.0400 -0.7212 -1.2493 27 6 1.5811 -0.0722 -2.5658 28 6 2.9921 -0.3571 -3.1067 29 6 3.4751 -0.3269 -1.6469 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.1838 0.6425 2.6226 34 1 1.1218 1.4664 3.5085 35 1 1.0272 1.5995 1.7360 36 1 1.4768 -0.8154 4.4611 37 1 2.3155 -2.0022 3.4334 38 1 2.9463 -0.5452 6.1935 39 1 4.5779 -1.2566 5.8049 40 1 5.4705 0.9288 5.1359 41 1 4.1974 1.5737 6.2577 42 1 5.1638 1.3690 3.0059 43 1 3.5862 1.7237 2.2618 44 1 5.2652 3.7820 1.8090 45 1 6.5708 6.4660 0.3152 46 1 1.8772 -1.7984 -1.2135 47 1 1.3551 0.9901 -2.4733 48 1 0.7966 -0.6299 -3.0773 49 1 3.0896 -1.3348 -3.5787 50 1 3.3969 0.4500 -3.7173 51 1 4.2187 -1.0900 -1.4172 52 1 3.7661 0.6659 -1.3038 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235741437.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:11 Heat of formation + Delta-G solvation = -31.880670 kcal Electronic energy + Delta-G solvation = -31183.461972 eV Core-core repulsion = 27184.147404 eV Total energy + Delta-G solvation = -3999.314568 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.84662 -40.99918 -39.64992 -39.10603 -36.46706 -35.95874 -33.95457 -33.34564 -32.06045 -29.75807 -27.72865 -27.55079 -26.84395 -26.08825 -25.37663 -24.91282 -22.96614 -21.14110 -20.83145 -20.32130 -19.94552 -19.93386 -17.96368 -17.71789 -17.32987 -17.21065 -16.87829 -16.46771 -16.09600 -16.01833 -15.72764 -15.60854 -15.21614 -14.86126 -14.73169 -14.49473 -14.08197 -13.78385 -13.74861 -13.54938 -13.43233 -13.36287 -13.09319 -13.01379 -12.89176 -12.76302 -12.52993 -12.46514 -12.40021 -12.25092 -12.14759 -12.10724 -11.93776 -11.63270 -11.49634 -11.39465 -11.23569 -11.00001 -10.54134 -10.42353 -10.04467 -9.91146 -9.43226 -8.48158 -5.97446 1.36320 1.40592 1.53356 1.67749 2.00196 2.07350 2.27102 2.82725 3.17116 3.29986 3.44572 3.56748 3.71073 3.72711 3.82133 3.94031 4.01562 4.13700 4.18053 4.22600 4.28233 4.30369 4.32310 4.42078 4.43499 4.45757 4.51413 4.64919 4.67853 4.83512 4.84096 4.85396 4.87543 4.88919 4.93006 4.98137 5.04084 5.09460 5.10148 5.13780 5.22603 5.33603 5.35363 5.39345 5.39698 5.59780 5.64202 5.89332 6.05797 6.46967 6.56484 7.10031 7.22958 7.51698 8.06788 8.69299 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008725 B = 0.003952 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.509479 B = 7082.448608 C = 9319.996626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.100 4.100 3 H 0.093 0.907 4 C 0.512 3.488 5 O -0.578 6.578 6 N -0.604 5.604 7 C 0.077 3.923 8 C 0.137 3.863 9 C 0.009 3.991 10 H 0.064 0.936 11 C -0.112 4.112 12 C 0.001 3.999 13 N -0.443 5.443 14 C 0.033 3.967 15 C 0.445 3.555 16 O -0.611 6.611 17 N -0.574 5.574 18 C -0.331 4.331 19 H 0.080 0.920 20 C -0.012 4.012 21 N -0.921 5.921 22 Si 0.993 3.007 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.271 1.271 26 C -0.085 4.085 27 C -0.124 4.124 28 C -0.139 4.139 29 C -0.145 4.145 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.091 0.909 44 H 0.393 0.607 45 H 0.277 0.723 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.085 0.915 50 H 0.070 0.930 51 H 0.050 0.950 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.030 -15.111 -3.319 19.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 H 0.111 0.889 4 C 0.302 3.698 5 O -0.458 6.458 6 N -0.335 5.335 7 C -0.066 4.066 8 C 0.014 3.986 9 C -0.102 4.102 10 H 0.082 0.918 11 C -0.150 4.150 12 C -0.128 4.128 13 N -0.165 5.165 14 C -0.099 4.099 15 C 0.232 3.768 16 O -0.497 6.497 17 N -0.211 5.211 18 C -0.461 4.461 19 H 0.098 0.902 20 C -0.211 4.211 21 N -0.562 5.562 22 Si 0.816 3.184 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.196 1.196 26 C -0.104 4.104 27 C -0.161 4.161 28 C -0.176 4.176 29 C -0.182 4.182 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.129 0.871 39 H 0.115 0.885 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.109 0.891 44 H 0.226 0.774 45 H 0.087 0.913 46 H 0.102 0.898 47 H 0.105 0.895 48 H 0.100 0.900 49 H 0.104 0.896 50 H 0.088 0.912 51 H 0.069 0.931 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.498 -14.857 -2.767 18.990 hybrid contribution 1.724 0.661 -0.536 1.923 sum -9.774 -14.196 -3.303 17.549 Atomic orbital electron populations 1.21980 0.91028 1.03002 1.04478 1.21361 0.99133 0.99878 0.91758 0.88941 1.21123 0.79282 0.84064 0.85344 1.90633 1.39704 1.28385 1.87068 1.47806 1.50892 1.29343 1.05412 1.22100 0.94511 0.86329 1.03628 1.21472 0.93767 0.96265 0.87089 1.23897 0.98763 0.89406 0.98089 0.91788 1.23164 1.02509 0.95380 0.93960 1.23618 0.95333 0.98037 0.95842 1.68761 1.37674 1.06623 1.03481 1.22201 0.98583 0.91895 0.97209 1.20511 0.82432 0.88490 0.85320 1.90487 1.54298 1.79010 1.25860 1.41952 1.52504 1.08346 1.18303 1.19646 1.37695 0.84832 1.03879 0.90185 1.26036 0.95876 1.04383 0.94845 1.69681 1.39689 1.38039 1.08801 0.84934 0.78747 0.76770 0.77941 1.19772 1.19519 1.19550 1.22344 0.95849 0.99517 0.92715 1.22907 0.96960 1.01321 0.94911 1.22801 0.97035 1.02308 0.95484 1.22987 0.96883 1.00699 0.97653 0.90256 0.90027 0.92388 0.90035 0.90877 0.91245 0.88086 0.89848 0.87077 0.88529 0.92732 0.91109 0.92726 0.89096 0.77401 0.91311 0.89784 0.89536 0.90012 0.89648 0.91164 0.93077 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.63 71.98 0.62 -1.70 16 2 C -0.10 -2.15 1.67 -11.54 -0.02 -2.17 16 3 H 0.09 2.09 7.21 -2.39 -0.02 2.07 16 4 C 0.51 13.50 7.07 87.66 0.62 14.12 16 5 O -0.58 -18.93 15.42 -3.01 -0.05 -18.98 16 6 N -0.60 -14.11 2.70 -846.78 -2.29 -16.40 16 7 C 0.08 1.60 8.31 127.77 1.06 2.66 16 8 C 0.14 3.03 5.56 86.38 0.48 3.51 16 9 C 0.01 0.23 3.37 42.19 0.14 0.37 16 10 H 0.06 1.82 7.77 -2.39 -0.02 1.80 16 11 C -0.11 -2.35 8.00 30.94 0.25 -2.10 16 12 C 0.00 0.02 6.71 83.58 0.56 0.59 16 13 N -0.44 -14.12 4.60 -906.71 -4.17 -18.29 16 14 C 0.03 1.23 5.31 85.55 0.45 1.68 16 15 C 0.45 21.47 7.62 87.65 0.67 22.14 16 16 O -0.61 -33.48 15.33 -3.07 -0.05 -33.52 16 17 N -0.57 -29.88 5.29 -307.00 -1.62 -31.50 16 18 C -0.33 -18.79 9.68 84.04 0.81 -17.98 16 19 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 20 C -0.01 -0.62 5.50 84.92 0.47 -0.16 16 21 N -0.92 -49.95 13.05 21.66 0.28 -49.66 16 22 Si 0.99 42.79 29.55 68.60 2.03 44.81 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 26 C -0.09 -1.85 2.54 -10.18 -0.03 -1.87 16 27 C -0.12 -2.11 6.68 31.12 0.21 -1.91 16 28 C -0.14 -2.65 8.07 31.12 0.25 -2.39 16 29 C -0.14 -3.50 7.63 31.21 0.24 -3.26 16 30 H 0.08 1.12 4.53 -2.39 -0.01 1.11 16 31 H 0.08 1.06 7.45 -2.39 -0.02 1.05 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 1.25 6.95 -2.39 -0.02 1.23 16 34 H 0.07 1.85 7.22 -2.39 -0.02 1.84 16 35 H 0.07 1.46 6.01 -2.39 -0.01 1.44 16 36 H 0.10 1.84 7.80 -2.39 -0.02 1.82 16 37 H 0.08 1.88 7.42 -2.39 -0.02 1.86 16 38 H 0.11 1.97 7.94 -2.39 -0.02 1.96 16 39 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.05 1.73 7.70 -2.39 -0.02 1.71 16 41 H 0.07 2.42 8.13 -2.38 -0.02 2.40 16 42 H 0.05 1.97 7.56 -2.39 -0.02 1.95 16 43 H 0.09 3.21 7.85 -2.38 -0.02 3.19 16 44 H 0.39 19.82 7.90 -92.71 -0.73 19.08 16 45 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 46 H 0.08 2.01 7.86 -2.39 -0.02 1.99 16 47 H 0.09 1.42 8.10 -2.39 -0.02 1.40 16 48 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 52 H 0.07 1.79 7.97 -2.39 -0.02 1.77 16 Total: -1.00 -69.59 407.30 1.10 -68.49 By element: Atomic # 1 Polarization: 43.37 SS G_CDS: 0.18 Total: 43.55 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 6.79 Total: 11.51 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -7.80 Total: -115.86 kcal Atomic # 8 Polarization: -52.41 SS G_CDS: -0.09 Total: -52.50 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -69.59 1.10 -68.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235741437.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.605 kcal (2) G-P(sol) polarization free energy of solvation -69.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds