Wall clock time and date at job start Tue Mar 31 2020 20:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47179 * 2 1 4 4 C 1.50699 * 109.47031 * 239.99785 * 2 1 3 5 5 O 1.21275 * 120.00173 * 274.72265 * 4 2 1 6 6 N 1.34784 * 119.99840 * 94.72613 * 4 2 1 7 7 C 1.46923 * 120.63104 * 354.61991 * 6 4 2 8 8 C 1.53188 * 108.77468 * 233.58758 * 7 6 4 9 9 C 1.53038 * 109.33990 * 305.38278 * 8 7 6 10 10 C 1.53043 * 109.54300 * 61.31426 * 9 8 7 11 11 H 1.09004 * 109.49163 * 58.65150 * 10 9 8 12 12 C 1.50691 * 109.49790 * 178.71737 * 10 9 8 13 13 O 1.21290 * 119.99998 * 119.94151 * 12 10 9 14 14 N 1.34776 * 120.00388 * 299.93575 * 12 10 9 15 15 C 1.46500 * 120.00418 * 180.02562 * 14 12 10 16 16 C 1.53001 * 109.47397 * 180.02562 * 15 14 12 17 17 N 1.46495 * 109.47060 * 180.02562 * 16 15 14 18 18 C 1.36936 * 120.00109 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99686 * 359.72038 * 18 17 16 20 20 C 1.38811 * 120.00363 * 179.97438 * 18 17 16 21 21 N 1.31616 * 119.99889 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99868 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47207 * 89.99777 * 22 20 18 24 24 H 1.48503 * 109.47039 * 209.99783 * 22 20 18 25 25 H 1.48504 * 109.46981 * 329.99653 * 22 20 18 26 26 C 1.46930 * 120.62793 * 174.59503 * 6 4 2 27 27 C 1.53004 * 109.47025 * 119.99961 * 2 1 3 28 28 C 1.53001 * 117.49817 * 248.75124 * 27 2 1 29 29 C 1.52995 * 117.49736 * 180.08585 * 27 2 1 30 30 H 1.08993 * 109.47123 * 184.98779 * 1 2 3 31 31 H 1.08997 * 109.46925 * 304.99714 * 1 2 3 32 32 H 1.09008 * 109.46623 * 64.99135 * 1 2 3 33 33 H 1.08995 * 109.58381 * 353.37344 * 7 6 4 34 34 H 1.08998 * 109.58388 * 113.65791 * 7 6 4 35 35 H 1.09001 * 109.49846 * 65.31587 * 8 7 6 36 36 H 1.09000 * 109.50152 * 185.37999 * 8 7 6 37 37 H 1.09006 * 109.43202 * 301.31073 * 9 8 7 38 38 H 1.09003 * 109.48695 * 181.35550 * 9 8 7 39 39 H 0.97003 * 119.99650 * 359.97438 * 14 12 10 40 40 H 1.09001 * 109.46942 * 59.99533 * 15 14 12 41 41 H 1.08998 * 109.47191 * 300.00197 * 15 14 12 42 42 H 1.08999 * 109.46960 * 59.99750 * 16 15 14 43 43 H 1.09006 * 109.46951 * 299.99962 * 16 15 14 44 44 H 0.97003 * 120.00270 * 0.02562 * 17 16 15 45 45 H 0.97007 * 119.99861 * 180.02562 * 21 20 18 46 46 H 1.08997 * 109.58610 * 6.63007 * 26 6 4 47 47 H 1.08988 * 109.70475 * 246.26970 * 26 6 4 48 48 H 1.09004 * 115.54888 * 34.41269 * 27 2 1 49 49 H 1.09008 * 117.49698 * 359.97438 * 28 27 2 50 50 H 1.08989 * 117.50373 * 145.02240 * 28 27 2 51 51 H 1.08998 * 117.49945 * 214.97750 * 29 27 2 52 52 H 1.09002 * 117.50343 * 0.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.1529 -1.9172 -1.2271 6 7 2.3476 -0.0047 -2.3346 7 6 2.0969 1.4417 -2.3954 8 6 1.2693 1.7464 -3.6480 9 6 1.9833 1.1800 -4.8774 10 6 2.1119 -0.3389 -4.7402 11 1 1.1204 -0.7800 -4.6371 12 6 2.7868 -0.8992 -5.9655 13 8 3.8334 -1.5029 -5.8587 14 7 2.2276 -0.7296 -7.1800 15 6 2.8835 -1.2748 -8.3711 16 6 2.0481 -0.9446 -9.6096 17 7 2.7037 -1.4903 -10.8006 18 6 2.1360 -1.3173 -12.0346 19 1 1.2025 -0.7823 -12.1294 20 6 2.7575 -1.8339 -13.1632 21 7 2.2115 -1.6679 -14.3492 22 14 4.3679 -2.7659 -12.9985 23 1 4.0858 -4.2099 -12.7972 24 1 5.1724 -2.5862 -14.2338 25 1 5.1258 -2.2424 -11.8336 26 6 2.9491 -0.6671 -3.5000 27 6 2.0400 -0.7213 1.2493 28 6 2.7392 0.1231 2.3165 29 6 3.5550 -0.8263 1.4353 30 1 -0.3633 -1.0237 0.0893 31 1 -0.3633 0.5894 0.8418 32 1 -0.3633 0.4345 -0.9314 33 1 1.5461 1.7547 -1.5085 34 1 3.0461 1.9753 -2.4434 35 1 0.2856 1.2861 -3.5549 36 1 1.1573 2.8252 -3.7566 37 1 2.9762 1.6228 -4.9562 38 1 1.4084 1.4164 -5.7728 39 1 1.3904 -0.2472 -7.2653 40 1 2.9755 -2.3565 -8.2722 41 1 3.8750 -0.8338 -8.4739 42 1 1.9565 0.1371 -9.7082 43 1 1.0564 -1.3853 -9.5071 44 1 3.5400 -1.9743 -10.7151 45 1 2.6456 -2.0293 -15.1379 46 1 2.9605 -1.7455 -3.3418 47 1 3.9683 -0.3078 -3.6416 48 1 1.4318 -1.5594 1.5894 49 1 2.8363 1.1925 2.1285 50 1 2.5915 -0.1597 3.3587 51 1 3.9435 -1.7334 1.8982 52 1 4.1884 -0.3813 0.6680 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265879540.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:26 Heat of formation + Delta-G solvation = -67.840826 kcal Electronic energy + Delta-G solvation = -29295.870401 eV Core-core repulsion = 25294.996484 eV Total energy + Delta-G solvation = -4000.873917 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.79131 -40.81353 -38.66889 -37.77308 -37.43952 -35.60311 -34.44587 -33.46395 -33.04881 -32.11988 -29.83985 -26.93174 -26.00350 -25.25123 -24.44154 -23.28293 -23.12344 -22.79381 -21.90702 -20.92937 -19.85691 -19.63047 -18.61466 -17.90935 -17.24068 -17.04420 -16.76909 -16.43304 -16.28157 -15.90323 -15.71651 -15.64149 -15.42236 -15.27879 -14.93368 -14.82800 -14.57963 -14.21763 -14.12976 -13.74609 -13.45815 -13.43745 -13.20278 -13.10215 -12.80483 -12.73515 -12.63849 -12.53679 -12.42259 -12.23722 -12.10064 -11.98004 -11.84206 -11.81008 -11.65396 -11.39166 -11.10684 -11.05066 -10.92857 -10.50301 -10.19722 -9.71479 -9.37521 -8.06453 -5.41594 1.37911 1.39464 1.46450 1.52381 1.57797 1.73503 2.19208 2.45317 2.86735 3.25527 3.43612 3.52916 3.58472 3.70360 3.79128 3.80936 3.90921 3.93650 4.05484 4.07115 4.15378 4.17548 4.20561 4.24824 4.34372 4.48400 4.53060 4.56628 4.63637 4.75029 4.76793 4.78467 4.85962 4.89709 4.96455 4.98709 5.02843 5.07955 5.09873 5.10463 5.18354 5.23293 5.31576 5.33629 5.38835 5.46136 5.71335 6.16476 6.37803 6.46629 7.01941 7.13357 7.17357 7.76767 7.93900 9.14179 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028398 B = 0.001815 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.744547 B =15419.344383 C =15905.581423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.072 4.072 3 H 0.121 0.879 4 C 0.514 3.486 5 O -0.585 6.585 6 N -0.610 5.610 7 C 0.092 3.908 8 C -0.126 4.126 9 C -0.111 4.111 10 C -0.106 4.106 11 H 0.112 0.888 12 C 0.517 3.483 13 O -0.586 6.586 14 N -0.707 5.707 15 C 0.122 3.878 16 C 0.151 3.849 17 N -0.759 5.759 18 C -0.238 4.238 19 H 0.065 0.935 20 C -0.058 4.058 21 N -0.978 5.978 22 Si 0.951 3.049 23 H -0.279 1.279 24 H -0.293 1.293 25 H -0.255 1.255 26 C 0.135 3.865 27 C -0.148 4.148 28 C -0.149 4.149 29 C -0.196 4.196 30 H 0.045 0.955 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.418 0.582 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.045 0.955 43 H 0.041 0.959 44 H 0.366 0.634 45 H 0.259 0.741 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.098 0.902 49 H 0.114 0.886 50 H 0.106 0.894 51 H 0.086 0.914 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.205 13.322 37.404 39.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.093 4.093 3 H 0.139 0.861 4 C 0.304 3.696 5 O -0.465 6.465 6 N -0.343 5.343 7 C -0.029 4.029 8 C -0.164 4.164 9 C -0.149 4.149 10 C -0.129 4.129 11 H 0.130 0.870 12 C 0.304 3.696 13 O -0.466 6.466 14 N -0.360 5.360 15 C -0.003 4.003 16 C 0.024 3.976 17 N -0.406 5.406 18 C -0.369 4.369 19 H 0.083 0.917 20 C -0.250 4.250 21 N -0.628 5.628 22 Si 0.778 3.222 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.179 1.179 26 C 0.011 3.989 27 C -0.167 4.167 28 C -0.186 4.186 29 C -0.233 4.233 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.133 0.867 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.129 0.871 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.255 0.745 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.199 0.801 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.116 0.884 49 H 0.133 0.867 50 H 0.125 0.875 51 H 0.105 0.895 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.572 12.358 37.331 39.485 hybrid contribution 0.855 -1.145 -0.974 1.729 sum -2.716 11.213 36.358 38.144 Atomic orbital electron populations 1.21725 0.90729 1.02721 1.04162 1.21013 0.98849 1.00227 0.89220 0.86148 1.21394 0.76042 0.87193 0.84972 1.90684 1.55042 1.16696 1.84030 1.48266 1.61749 1.10306 1.13931 1.22223 1.01620 0.78067 1.00964 1.21924 0.98894 1.03354 0.92212 1.21610 1.02595 0.89925 1.00779 1.21593 1.00727 0.99884 0.90659 0.87032 1.21005 0.84568 0.78813 0.85194 1.90716 1.25313 1.43567 1.86978 1.45701 1.27387 1.57445 1.05448 1.21233 0.96451 0.98599 0.84054 1.20835 0.95047 0.97646 0.84048 1.42563 1.26901 1.68018 1.03085 1.19015 1.04746 1.29077 0.84030 0.91702 1.25457 1.02438 1.02325 0.94810 1.69863 1.42224 1.52316 0.98446 0.85479 0.80367 0.78950 0.77425 1.20555 1.21938 1.17937 1.21060 0.95775 0.98168 0.83877 1.22084 0.95131 1.02384 0.97087 1.23172 1.01249 0.97934 0.96219 1.22904 0.93990 1.02504 1.03884 0.93539 0.88792 0.90931 0.86696 0.90032 0.90489 0.87093 0.91211 0.89103 0.74478 0.92511 0.92072 0.93744 0.94145 0.80124 0.93193 0.91980 0.91418 0.88369 0.86749 0.87544 0.89532 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.06 71.98 0.65 -0.42 16 2 C -0.07 -0.79 2.08 -11.54 -0.02 -0.82 16 3 H 0.12 0.61 5.95 -2.39 -0.01 0.60 16 4 C 0.51 9.99 6.34 87.66 0.56 10.55 16 5 O -0.59 -17.61 15.87 -3.01 -0.05 -17.66 16 6 N -0.61 -9.54 2.97 -818.94 -2.43 -11.98 16 7 C 0.09 0.58 6.15 86.36 0.53 1.11 16 8 C -0.13 -0.59 6.08 30.67 0.19 -0.40 16 9 C -0.11 -1.11 5.08 30.62 0.16 -0.95 16 10 C -0.11 -1.84 2.68 -11.46 -0.03 -1.87 16 11 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 12 C 0.52 13.12 7.16 87.65 0.63 13.75 16 13 O -0.59 -20.57 15.92 -3.06 -0.05 -20.61 16 14 N -0.71 -16.30 5.44 -463.06 -2.52 -18.82 16 15 C 0.12 3.69 5.79 86.38 0.50 4.19 16 16 C 0.15 5.27 6.37 86.38 0.55 5.82 16 17 N -0.76 -35.03 5.41 -343.45 -1.86 -36.89 16 18 C -0.24 -13.39 10.47 84.03 0.88 -12.51 16 19 H 0.06 3.92 8.06 -2.91 -0.02 3.90 16 20 C -0.06 -3.41 5.50 84.86 0.47 -2.95 16 21 N -0.98 -62.16 13.97 21.65 0.30 -61.86 16 22 Si 0.95 45.78 27.74 68.60 1.90 47.68 16 23 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 25 H -0.25 -11.23 6.52 99.48 0.65 -10.59 16 26 C 0.14 2.91 5.08 86.36 0.44 3.35 16 27 C -0.15 -1.97 4.67 -10.79 -0.05 -2.02 16 28 C -0.15 -1.26 10.18 30.62 0.31 -0.95 16 29 C -0.20 -2.90 9.87 30.62 0.30 -2.60 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.07 0.41 8.11 -2.38 -0.02 0.39 16 33 H 0.12 0.15 5.51 -2.39 -0.01 0.14 16 34 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.09 0.68 7.53 -2.39 -0.02 0.67 16 39 H 0.42 6.80 7.88 -92.71 -0.73 6.07 16 40 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 44 H 0.37 16.48 5.53 -92.71 -0.51 15.96 16 45 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 46 H 0.06 1.81 7.00 -2.39 -0.02 1.80 16 47 H 0.07 1.57 7.95 -2.39 -0.02 1.55 16 48 H 0.10 1.53 8.11 -2.39 -0.02 1.51 16 49 H 0.11 0.53 8.05 -2.38 -0.02 0.51 16 50 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 52 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -82.27 412.57 0.96 -81.31 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -0.39 Total: 25.53 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 6.05 Total: 13.30 kcal Atomic # 7 Polarization: -123.04 SS G_CDS: -6.51 Total: -129.55 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -0.10 Total: -38.27 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.90 Total: 47.68 kcal Total: -82.27 0.96 -81.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265879540.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.467 kcal (2) G-P(sol) polarization free energy of solvation -82.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds