Wall clock time and date at job start Tue Mar 31 2020 20:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.47128 * 2 1 4 4 C 1.50695 * 109.46815 * 119.99782 * 2 1 3 5 5 O 1.21284 * 120.00236 * 95.30232 * 4 2 1 6 6 N 1.34780 * 119.99868 * 275.30178 * 4 2 1 7 7 C 1.46920 * 120.63234 * 355.31763 * 6 4 2 8 8 C 1.53187 * 108.77917 * 126.37105 * 7 6 4 9 9 C 1.53039 * 109.34094 * 54.61738 * 8 7 6 10 10 C 1.53046 * 109.53744 * 298.68625 * 9 8 7 11 11 H 1.08991 * 109.50026 * 301.34590 * 10 9 8 12 12 C 1.50700 * 109.49803 * 181.28065 * 10 9 8 13 13 O 1.21284 * 120.00227 * 240.06940 * 12 10 9 14 14 N 1.34779 * 119.99942 * 59.78830 * 12 10 9 15 15 C 1.46499 * 120.00166 * 179.97438 * 14 12 10 16 16 C 1.52995 * 109.47327 * 180.02562 * 15 14 12 17 17 N 1.46499 * 109.47322 * 180.02562 * 16 15 14 18 18 C 1.36938 * 120.00221 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99885 * 359.97438 * 18 17 16 20 20 C 1.38809 * 119.99973 * 179.97438 * 18 17 16 21 21 N 1.31616 * 120.00116 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99714 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47650 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47559 * 119.99824 * 22 20 18 25 25 H 1.48504 * 109.46960 * 239.99477 * 22 20 18 26 26 C 1.46931 * 120.62700 * 175.29795 * 6 4 2 27 27 C 1.53000 * 109.47197 * 240.00069 * 2 1 3 28 28 C 1.52994 * 117.49802 * 128.75084 * 27 2 1 29 29 C 1.52997 * 117.49948 * 60.08685 * 27 2 1 30 30 H 1.08994 * 109.47091 * 184.95069 * 1 2 3 31 31 H 1.08992 * 109.47223 * 304.95690 * 1 2 3 32 32 H 1.09003 * 109.46469 * 64.95447 * 1 2 3 33 33 H 1.09002 * 109.58525 * 246.15552 * 7 6 4 34 34 H 1.08996 * 109.58845 * 6.58286 * 7 6 4 35 35 H 1.08996 * 109.50601 * 174.58605 * 8 7 6 36 36 H 1.09005 * 109.49777 * 294.65400 * 8 7 6 37 37 H 1.08998 * 109.49035 * 178.65389 * 9 8 7 38 38 H 1.08995 * 109.43236 * 58.68678 * 9 8 7 39 39 H 0.96999 * 119.99602 * 0.02562 * 14 12 10 40 40 H 1.09004 * 109.47429 * 300.00637 * 15 14 12 41 41 H 1.09001 * 109.46831 * 60.00024 * 15 14 12 42 42 H 1.09008 * 109.47177 * 299.99746 * 16 15 14 43 43 H 1.09001 * 109.47439 * 60.00036 * 16 15 14 44 44 H 0.96999 * 120.00242 * 359.97438 * 17 16 15 45 45 H 0.97006 * 119.99828 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.58858 * 113.84615 * 26 6 4 47 47 H 1.08996 * 109.70650 * 353.48171 * 26 6 4 48 48 H 1.09004 * 115.54394 * 274.41748 * 27 2 1 49 49 H 1.09002 * 117.50090 * 359.97438 * 28 27 2 50 50 H 1.09003 * 117.49896 * 145.02256 * 28 27 2 51 51 H 1.09003 * 117.49745 * 214.97674 * 29 27 2 52 52 H 1.09001 * 117.50203 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3260 -1.8858 1.1748 6 7 2.1552 -0.0394 2.3929 7 6 1.9018 1.4065 2.4531 8 6 0.8714 1.6812 3.5529 9 6 1.3610 1.0737 4.8694 10 6 1.5070 -0.4416 4.7108 11 1 0.5471 -0.8716 4.4252 12 6 1.9590 -1.0428 6.0167 13 8 3.0066 -1.6513 6.0738 14 7 1.2018 -0.8994 7.1224 15 6 1.6408 -1.4843 8.3918 16 6 0.6080 -1.1788 9.4784 17 7 1.0474 -1.7632 10.7479 18 6 0.2776 -1.6183 11.8712 19 1 -0.6532 -1.0729 11.8212 20 6 0.6937 -2.1725 13.0739 21 7 1.8278 -2.8376 13.1346 22 14 -0.3561 -1.9742 14.6062 23 1 -1.5727 -1.1900 14.2748 24 1 -0.7522 -3.3132 15.1117 25 1 0.4225 -1.2614 15.6508 26 6 2.5448 -0.7403 3.6242 27 6 2.0401 -0.7212 -1.2492 28 6 3.0764 0.0039 -2.1100 29 6 1.6375 -0.1483 -2.6096 30 1 -0.3633 -1.0238 0.0887 31 1 -0.3633 0.5888 0.8422 32 1 -0.3632 0.4351 -0.9311 33 1 2.8295 1.9308 2.6825 34 1 1.5132 1.7496 1.4944 35 1 0.7458 2.7572 3.6734 36 1 -0.0829 1.2321 3.2777 37 1 0.6410 1.2883 5.6590 38 1 2.3267 1.5060 5.1313 39 1 0.3658 -0.4095 7.0775 40 1 1.7408 -2.5639 8.2792 41 1 2.6033 -1.0579 8.6746 42 1 0.5078 -0.0992 9.5912 43 1 -0.3543 -1.6054 9.1954 44 1 1.8832 -2.2534 10.7927 45 1 2.1184 -3.2252 13.9751 46 1 3.5249 -0.3910 3.9490 47 1 2.5820 -1.8139 3.4398 48 1 2.1254 -1.8046 -1.1646 49 1 3.3946 0.9950 -1.7865 50 1 3.8433 -0.6024 -2.5921 51 1 1.4584 -0.8548 -3.4201 52 1 1.0090 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265879542.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:36 Heat of formation + Delta-G solvation = -47.655976 kcal Electronic energy + Delta-G solvation = -29141.731485 eV Core-core repulsion = 25141.732849 eV Total energy + Delta-G solvation = -3999.998636 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.99540 -39.77327 -38.03005 -37.13436 -35.72149 -34.00546 -33.57078 -32.42470 -31.55187 -31.02445 -27.84885 -26.28784 -25.22232 -24.48339 -23.27250 -22.70668 -22.16598 -21.50333 -20.92327 -19.92138 -19.07003 -17.98702 -17.31751 -16.96910 -16.50927 -15.84962 -15.59300 -15.44152 -15.11315 -14.84394 -14.80529 -14.55583 -14.44815 -13.98391 -13.87201 -13.71070 -13.27753 -13.18517 -13.02761 -13.01550 -12.79754 -12.58517 -12.42248 -11.91826 -11.84963 -11.67535 -11.47226 -11.38644 -11.22630 -11.12789 -10.99887 -10.84251 -10.82569 -10.77487 -10.45132 -10.10455 -9.97395 -9.85781 -9.66920 -9.02540 -8.97961 -8.85006 -7.01239 -5.81331 -3.12217 2.31043 2.52128 2.65228 3.27678 3.36911 3.40802 3.46267 3.48648 3.99993 4.14250 4.21190 4.37426 4.44005 4.46419 4.55697 4.57314 4.62712 4.66543 4.80299 4.89391 4.94045 5.00766 5.03478 5.15625 5.18703 5.26417 5.29642 5.36273 5.40296 5.47057 5.48404 5.51560 5.53409 5.58353 5.68431 5.69146 5.75673 5.79035 5.86094 5.91497 5.94276 6.11976 6.14949 6.45787 6.67801 6.71408 7.05152 7.56448 7.64497 7.87280 8.26936 8.36202 9.47533 10.02268 10.36877 11.41231 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.033057 B = 0.001678 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.825097 B =16683.351073 C =16983.752923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.080 4.080 3 H 0.092 0.908 4 C 0.523 3.477 5 O -0.533 6.533 6 N -0.613 5.613 7 C 0.101 3.899 8 C -0.133 4.133 9 C -0.113 4.113 10 C -0.121 4.121 11 H 0.100 0.900 12 C 0.517 3.483 13 O -0.538 6.538 14 N -0.721 5.721 15 C 0.110 3.890 16 C 0.145 3.855 17 N -0.729 5.729 18 C -0.245 4.245 19 H 0.072 0.928 20 C -0.012 4.012 21 N -0.930 5.930 22 Si 0.910 3.090 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.132 3.868 27 C -0.141 4.141 28 C -0.180 4.180 29 C -0.176 4.176 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.399 0.601 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.024 0.976 43 H 0.024 0.976 44 H 0.386 0.614 45 H 0.256 0.744 46 H 0.078 0.922 47 H 0.100 0.900 48 H 0.119 0.881 49 H 0.093 0.907 50 H 0.095 0.905 51 H 0.095 0.905 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.018 13.419 -32.343 35.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 H 0.110 0.890 4 C 0.311 3.689 5 O -0.409 6.409 6 N -0.346 5.346 7 C -0.022 4.022 8 C -0.172 4.172 9 C -0.151 4.151 10 C -0.143 4.143 11 H 0.118 0.882 12 C 0.302 3.698 13 O -0.415 6.415 14 N -0.372 5.372 15 C -0.013 4.013 16 C 0.017 3.983 17 N -0.375 5.375 18 C -0.376 4.376 19 H 0.090 0.910 20 C -0.208 4.208 21 N -0.578 5.578 22 Si 0.741 3.259 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.010 3.990 27 C -0.159 4.159 28 C -0.217 4.217 29 C -0.213 4.213 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.233 0.767 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.220 0.780 45 H 0.066 0.934 46 H 0.097 0.903 47 H 0.118 0.882 48 H 0.137 0.863 49 H 0.111 0.889 50 H 0.113 0.887 51 H 0.114 0.886 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.221 12.375 -32.198 34.566 hybrid contribution -0.697 0.231 1.062 1.291 sum -2.918 12.606 -31.136 33.718 Atomic orbital electron populations 1.21724 0.92061 1.03242 1.02674 1.20878 0.97738 0.99665 0.91811 0.88971 1.20541 0.77068 0.87142 0.84139 1.90706 1.49284 1.16360 1.84566 1.48116 1.68988 1.08869 1.08659 1.21880 0.99484 0.80648 1.00207 1.21930 0.98936 1.01682 0.94605 1.21543 1.02863 0.92688 0.97998 1.21663 1.01641 0.97450 0.93565 0.88156 1.20301 0.84297 0.80177 0.85011 1.90739 1.23388 1.41727 1.85615 1.45928 1.25142 1.56630 1.09486 1.21594 0.98987 0.98789 0.81976 1.20751 0.94594 0.96657 0.86311 1.42196 1.26203 1.65291 1.03770 1.19236 1.02138 1.29032 0.87165 0.90979 1.24783 0.97539 1.00515 0.97979 1.69680 1.21960 1.40288 1.25846 0.86080 0.79299 0.77280 0.83252 1.20519 1.21759 1.21768 1.21331 0.96559 0.99485 0.81656 1.22152 1.03598 1.00396 0.89792 1.23055 0.92662 1.01869 1.04086 1.22972 0.98037 1.03203 0.97041 0.91676 0.91973 0.91119 0.90906 0.89338 0.89936 0.91028 0.90587 0.90786 0.76711 0.91255 0.91228 0.95843 0.95846 0.77995 0.93394 0.90337 0.88203 0.86318 0.88851 0.88668 0.88615 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.00 37.16 0.33 -0.40 16 2 C -0.08 -0.53 2.04 -91.77 -0.19 -0.72 16 3 H 0.09 0.44 6.04 -51.93 -0.31 0.12 16 4 C 0.52 5.33 6.80 -10.99 -0.07 5.26 16 5 O -0.53 -7.74 15.23 5.55 0.08 -7.66 16 6 N -0.61 -5.33 2.97 -172.77 -0.51 -5.84 16 7 C 0.10 0.52 6.26 -3.72 -0.02 0.49 16 8 C -0.13 -0.61 6.08 -26.61 -0.16 -0.77 16 9 C -0.11 -0.76 5.08 -26.69 -0.14 -0.90 16 10 C -0.12 -1.16 2.68 -91.65 -0.25 -1.40 16 11 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 12 C 0.52 7.04 7.16 -10.98 -0.08 6.96 16 13 O -0.54 -9.69 15.92 5.55 0.09 -9.60 16 14 N -0.72 -9.40 5.44 -60.29 -0.33 -9.73 16 15 C 0.11 1.87 5.79 -4.04 -0.02 1.85 16 16 C 0.15 2.80 6.37 -4.04 -0.03 2.77 16 17 N -0.73 -18.48 5.60 -59.91 -0.34 -18.81 16 18 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16 22 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 26 C 0.13 1.46 5.05 -3.70 -0.02 1.44 16 27 C -0.14 -1.04 4.96 -90.62 -0.45 -1.49 16 28 C -0.18 -1.10 10.18 -26.69 -0.27 -1.37 16 29 C -0.18 -0.93 9.68 -26.69 -0.26 -1.19 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.26 7.85 -51.93 -0.41 -0.14 16 32 H 0.07 0.28 7.13 -51.93 -0.37 -0.09 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.29 5.14 -51.93 -0.27 0.02 16 35 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.45 7.52 -51.93 -0.39 0.06 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.40 4.01 7.86 -40.82 -0.32 3.68 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.39 10.39 7.67 -40.82 -0.31 10.08 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.08 0.92 7.96 -51.93 -0.41 0.51 16 47 H 0.10 1.38 7.04 -51.93 -0.37 1.01 16 48 H 0.12 1.15 7.33 -51.93 -0.38 0.77 16 49 H 0.09 0.48 8.05 -51.93 -0.42 0.07 16 50 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 52 H 0.09 0.39 7.59 -51.93 -0.39 0.00 16 LS Contribution 412.73 15.07 6.22 6.22 Total: -1.00 -35.35 412.73 -9.92 -45.28 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -8.97 Total: 7.32 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -1.87 Total: 3.13 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: -0.45 Total: -61.90 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.17 Total: -17.26 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.35 -9.92 -45.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265879542.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.379 kcal (2) G-P(sol) polarization free energy of solvation -35.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds