Wall clock time and date at job start Tue Mar 31 2020 20:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.47128 * 2 1 4 4 C 1.50695 * 109.46815 * 119.99782 * 2 1 3 5 5 O 1.21284 * 120.00236 * 95.30232 * 4 2 1 6 6 N 1.34780 * 119.99868 * 275.30178 * 4 2 1 7 7 C 1.46920 * 120.63234 * 355.31763 * 6 4 2 8 8 C 1.53187 * 108.77917 * 126.37105 * 7 6 4 9 9 C 1.53039 * 109.34094 * 54.61738 * 8 7 6 10 10 C 1.53046 * 109.53744 * 298.68625 * 9 8 7 11 11 H 1.08991 * 109.50026 * 301.34590 * 10 9 8 12 12 C 1.50700 * 109.49803 * 181.28065 * 10 9 8 13 13 O 1.21284 * 120.00227 * 240.06940 * 12 10 9 14 14 N 1.34779 * 119.99942 * 59.78830 * 12 10 9 15 15 C 1.46499 * 120.00166 * 179.97438 * 14 12 10 16 16 C 1.52995 * 109.47327 * 180.02562 * 15 14 12 17 17 N 1.46499 * 109.47322 * 180.02562 * 16 15 14 18 18 C 1.36938 * 120.00221 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99885 * 359.97438 * 18 17 16 20 20 C 1.38809 * 119.99973 * 179.97438 * 18 17 16 21 21 N 1.31616 * 120.00116 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99714 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47650 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47559 * 119.99824 * 22 20 18 25 25 H 1.48504 * 109.46960 * 239.99477 * 22 20 18 26 26 C 1.46931 * 120.62700 * 175.29795 * 6 4 2 27 27 C 1.53000 * 109.47197 * 240.00069 * 2 1 3 28 28 C 1.52994 * 117.49802 * 128.75084 * 27 2 1 29 29 C 1.52997 * 117.49948 * 60.08685 * 27 2 1 30 30 H 1.08994 * 109.47091 * 184.95069 * 1 2 3 31 31 H 1.08992 * 109.47223 * 304.95690 * 1 2 3 32 32 H 1.09003 * 109.46469 * 64.95447 * 1 2 3 33 33 H 1.09002 * 109.58525 * 246.15552 * 7 6 4 34 34 H 1.08996 * 109.58845 * 6.58286 * 7 6 4 35 35 H 1.08996 * 109.50601 * 174.58605 * 8 7 6 36 36 H 1.09005 * 109.49777 * 294.65400 * 8 7 6 37 37 H 1.08998 * 109.49035 * 178.65389 * 9 8 7 38 38 H 1.08995 * 109.43236 * 58.68678 * 9 8 7 39 39 H 0.96999 * 119.99602 * 0.02562 * 14 12 10 40 40 H 1.09004 * 109.47429 * 300.00637 * 15 14 12 41 41 H 1.09001 * 109.46831 * 60.00024 * 15 14 12 42 42 H 1.09008 * 109.47177 * 299.99746 * 16 15 14 43 43 H 1.09001 * 109.47439 * 60.00036 * 16 15 14 44 44 H 0.96999 * 120.00242 * 359.97438 * 17 16 15 45 45 H 0.97006 * 119.99828 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.58858 * 113.84615 * 26 6 4 47 47 H 1.08996 * 109.70650 * 353.48171 * 26 6 4 48 48 H 1.09004 * 115.54394 * 274.41748 * 27 2 1 49 49 H 1.09002 * 117.50090 * 359.97438 * 28 27 2 50 50 H 1.09003 * 117.49896 * 145.02256 * 28 27 2 51 51 H 1.09003 * 117.49745 * 214.97674 * 29 27 2 52 52 H 1.09001 * 117.50203 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3260 -1.8858 1.1748 6 7 2.1552 -0.0394 2.3929 7 6 1.9018 1.4065 2.4531 8 6 0.8714 1.6812 3.5529 9 6 1.3610 1.0737 4.8694 10 6 1.5070 -0.4416 4.7108 11 1 0.5471 -0.8716 4.4252 12 6 1.9590 -1.0428 6.0167 13 8 3.0066 -1.6513 6.0738 14 7 1.2018 -0.8994 7.1224 15 6 1.6408 -1.4843 8.3918 16 6 0.6080 -1.1788 9.4784 17 7 1.0474 -1.7632 10.7479 18 6 0.2776 -1.6183 11.8712 19 1 -0.6532 -1.0729 11.8212 20 6 0.6937 -2.1725 13.0739 21 7 1.8278 -2.8376 13.1346 22 14 -0.3561 -1.9742 14.6062 23 1 -1.5727 -1.1900 14.2748 24 1 -0.7522 -3.3132 15.1117 25 1 0.4225 -1.2614 15.6508 26 6 2.5448 -0.7403 3.6242 27 6 2.0401 -0.7212 -1.2492 28 6 3.0764 0.0039 -2.1100 29 6 1.6375 -0.1483 -2.6096 30 1 -0.3633 -1.0238 0.0887 31 1 -0.3633 0.5888 0.8422 32 1 -0.3632 0.4351 -0.9311 33 1 2.8295 1.9308 2.6825 34 1 1.5132 1.7496 1.4944 35 1 0.7458 2.7572 3.6734 36 1 -0.0829 1.2321 3.2777 37 1 0.6410 1.2883 5.6590 38 1 2.3267 1.5060 5.1313 39 1 0.3658 -0.4095 7.0775 40 1 1.7408 -2.5639 8.2792 41 1 2.6033 -1.0579 8.6746 42 1 0.5078 -0.0992 9.5912 43 1 -0.3543 -1.6054 9.1954 44 1 1.8832 -2.2534 10.7927 45 1 2.1184 -3.2252 13.9751 46 1 3.5249 -0.3910 3.9490 47 1 2.5820 -1.8139 3.4398 48 1 2.1254 -1.8046 -1.1646 49 1 3.3946 0.9950 -1.7865 50 1 3.8433 -0.6024 -2.5921 51 1 1.4584 -0.8548 -3.4201 52 1 1.0090 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265879542.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:35 Heat of formation + Delta-G solvation = -72.250577 kcal Electronic energy + Delta-G solvation = -29142.797987 eV Core-core repulsion = 25141.732849 eV Total energy + Delta-G solvation = -4001.065138 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.78973 -40.80156 -38.68250 -37.87292 -37.31631 -35.56656 -34.44018 -33.18259 -32.89524 -32.01184 -29.47554 -26.96180 -26.06525 -25.55476 -24.63727 -23.14444 -23.07719 -22.76564 -21.72014 -20.84546 -19.69971 -19.34672 -18.69098 -17.93658 -17.24561 -17.04093 -16.76136 -16.52649 -16.21583 -15.86928 -15.59758 -15.50152 -15.25627 -15.17282 -15.03783 -14.67679 -14.56530 -14.34804 -14.14953 -13.69494 -13.53656 -13.11308 -13.08599 -13.05274 -12.96670 -12.70590 -12.59314 -12.50581 -12.28911 -12.18480 -12.05239 -11.97497 -11.86077 -11.74092 -11.63424 -11.28098 -11.01400 -10.97596 -10.88110 -10.64522 -10.18879 -9.73020 -9.07557 -7.97703 -5.29285 1.48218 1.49725 1.53364 1.54685 1.59853 1.74997 2.20216 2.57720 2.89713 3.36953 3.40167 3.52266 3.65206 3.72734 3.77806 3.97938 3.99931 4.03412 4.06642 4.13020 4.16673 4.20004 4.20982 4.30950 4.45470 4.47826 4.56041 4.56967 4.63959 4.74835 4.78349 4.80273 4.87105 4.90910 4.97037 5.00899 5.04050 5.11170 5.11662 5.12184 5.26192 5.29517 5.34036 5.36179 5.41517 5.46440 5.48614 6.22951 6.37061 6.48298 7.12082 7.18134 7.29190 8.01089 8.23710 9.26170 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.033057 B = 0.001678 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.825097 B =16683.351073 C =16983.752923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.069 4.069 3 H 0.122 0.878 4 C 0.514 3.486 5 O -0.591 6.591 6 N -0.607 5.607 7 C 0.092 3.908 8 C -0.126 4.126 9 C -0.111 4.111 10 C -0.105 4.105 11 H 0.115 0.885 12 C 0.515 3.485 13 O -0.588 6.588 14 N -0.705 5.705 15 C 0.127 3.873 16 C 0.150 3.850 17 N -0.748 5.748 18 C -0.247 4.247 19 H 0.085 0.915 20 C -0.078 4.078 21 N -0.971 5.971 22 Si 0.980 3.020 23 H -0.260 1.260 24 H -0.295 1.295 25 H -0.293 1.293 26 C 0.135 3.865 27 C -0.164 4.164 28 C -0.183 4.183 29 C -0.156 4.156 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.418 0.582 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.041 0.959 43 H 0.037 0.963 44 H 0.373 0.627 45 H 0.252 0.748 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.083 0.917 49 H 0.109 0.891 50 H 0.087 0.913 51 H 0.096 0.904 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.779 17.239 -33.760 38.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.089 4.089 3 H 0.140 0.860 4 C 0.304 3.696 5 O -0.471 6.471 6 N -0.339 5.339 7 C -0.029 4.029 8 C -0.163 4.163 9 C -0.149 4.149 10 C -0.127 4.127 11 H 0.133 0.867 12 C 0.302 3.698 13 O -0.468 6.468 14 N -0.358 5.358 15 C 0.002 3.998 16 C 0.023 3.977 17 N -0.391 5.391 18 C -0.379 4.379 19 H 0.103 0.897 20 C -0.270 4.270 21 N -0.622 5.622 22 Si 0.808 3.192 23 H -0.184 1.184 24 H -0.222 1.222 25 H -0.221 1.221 26 C 0.011 3.989 27 C -0.183 4.183 28 C -0.220 4.220 29 C -0.193 4.193 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.256 0.744 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.204 0.796 45 H 0.060 0.940 46 H 0.083 0.917 47 H 0.079 0.921 48 H 0.101 0.899 49 H 0.127 0.873 50 H 0.106 0.894 51 H 0.114 0.886 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.056 16.285 -33.655 37.728 hybrid contribution 0.205 -0.968 1.416 1.727 sum -4.851 15.317 -32.239 36.021 Atomic orbital electron populations 1.21754 0.90654 1.02394 1.04591 1.20908 0.98670 1.00221 0.89144 0.86005 1.21351 0.76180 0.86699 0.85371 1.90682 1.51831 1.19068 1.85490 1.48215 1.68003 1.10414 1.07287 1.22256 1.00496 0.77922 1.02245 1.21938 0.98676 1.03278 0.92443 1.21617 1.03263 0.89789 1.00262 1.21590 1.01194 0.99740 0.90165 0.86703 1.21077 0.83403 0.79142 0.86181 1.90724 1.25756 1.43900 1.86437 1.45697 1.25822 1.56307 1.07977 1.21151 0.97836 0.97661 0.83170 1.20851 0.95261 0.97099 0.84491 1.42447 1.25654 1.65596 1.05426 1.19708 1.02390 1.27857 0.87939 0.89718 1.25681 0.98970 1.01003 1.01325 1.69851 1.24023 1.42020 1.26279 0.84987 0.78164 0.76961 0.79075 1.18438 1.22196 1.22063 1.21050 0.96761 0.97629 0.83435 1.22064 1.05863 0.98851 0.91530 1.23152 0.93007 1.02192 1.03635 1.23064 0.97507 1.03507 0.95207 0.93968 0.90172 0.88992 0.90187 0.86480 0.87020 0.90100 0.88971 0.91420 0.74447 0.93322 0.92791 0.94067 0.94515 0.79559 0.93952 0.91722 0.92062 0.89884 0.87293 0.89446 0.88559 0.86390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.00 71.98 0.65 -0.43 16 2 C -0.07 -0.79 2.04 -11.54 -0.02 -0.81 16 3 H 0.12 0.66 6.04 -2.38 -0.01 0.65 16 4 C 0.51 10.55 6.80 87.65 0.60 11.15 16 5 O -0.59 -18.67 15.23 -3.04 -0.05 -18.72 16 6 N -0.61 -10.06 2.97 -818.91 -2.43 -12.49 16 7 C 0.09 0.62 6.26 86.36 0.54 1.16 16 8 C -0.13 -0.58 6.08 30.67 0.19 -0.39 16 9 C -0.11 -1.17 5.08 30.62 0.16 -1.02 16 10 C -0.10 -1.91 2.68 -11.46 -0.03 -1.94 16 11 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 12 C 0.52 14.12 7.16 87.66 0.63 14.75 16 13 O -0.59 -22.35 15.92 -3.04 -0.05 -22.40 16 14 N -0.71 -17.74 5.44 -463.06 -2.52 -20.26 16 15 C 0.13 4.33 5.79 86.38 0.50 4.83 16 16 C 0.15 5.61 6.37 86.38 0.55 6.16 16 17 N -0.75 -37.96 5.60 -343.45 -1.92 -39.88 16 18 C -0.25 -13.62 9.99 84.03 0.84 -12.78 16 19 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 20 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 21 N -0.97 -60.16 13.06 21.65 0.28 -59.88 16 22 Si 0.98 45.61 29.55 68.60 2.03 47.63 16 23 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 26 C 0.14 3.11 5.05 86.36 0.44 3.54 16 27 C -0.16 -2.38 4.96 -10.80 -0.05 -2.43 16 28 C -0.18 -2.00 10.18 30.62 0.31 -1.69 16 29 C -0.16 -1.33 9.68 30.62 0.30 -1.04 16 30 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.08 0.35 7.85 -2.39 -0.02 0.33 16 32 H 0.09 0.36 7.13 -2.39 -0.02 0.34 16 33 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.12 0.16 5.14 -2.39 -0.01 0.15 16 35 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 36 H 0.08 0.30 8.14 -2.38 -0.02 0.28 16 37 H 0.09 0.72 7.52 -2.39 -0.02 0.70 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.42 7.32 7.86 -92.71 -0.73 6.59 16 40 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 43 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.37 20.63 7.67 -92.71 -0.71 19.92 16 45 H 0.25 15.07 8.31 -92.70 -0.77 14.30 16 46 H 0.06 1.63 7.96 -2.39 -0.02 1.61 16 47 H 0.06 1.88 7.04 -2.39 -0.02 1.86 16 48 H 0.08 1.80 7.33 -2.38 -0.02 1.78 16 49 H 0.11 0.84 8.05 -2.39 -0.02 0.82 16 50 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 52 H 0.12 0.49 7.59 -2.39 -0.02 0.47 16 Total: -1.00 -82.15 412.73 0.87 -81.28 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: -0.52 Total: 29.64 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 6.05 Total: 15.08 kcal Atomic # 7 Polarization: -125.92 SS G_CDS: -6.59 Total: -132.51 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -0.09 Total: -41.12 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -82.15 0.87 -81.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265879542.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.034 kcal (2) G-P(sol) polarization free energy of solvation -82.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds