Wall clock time and date at job start Tue Mar 31 2020 20:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47404 * 2 1 4 4 C 1.50700 * 109.47265 * 120.00459 * 2 1 3 5 5 O 1.21277 * 120.00154 * 119.99314 * 4 2 1 6 6 N 1.34778 * 119.99632 * 299.99728 * 4 2 1 7 7 C 1.46500 * 119.99674 * 179.97438 * 6 4 2 8 8 C 1.52999 * 109.47006 * 179.97438 * 7 6 4 9 9 H 1.09004 * 109.47121 * 295.00002 * 8 7 6 10 10 N 1.46898 * 109.47347 * 55.00353 * 8 7 6 11 11 C 1.46897 * 111.00303 * 207.47262 * 10 8 7 12 12 C 1.50700 * 109.47128 * 180.22562 * 11 10 8 13 13 O 1.21293 * 120.00334 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00105 * 179.97438 * 12 11 10 15 15 C 1.37092 * 120.00034 * 180.02562 * 14 12 11 16 16 H 1.08000 * 120.00270 * 359.97438 * 15 14 12 17 17 C 1.38950 * 119.99768 * 180.02562 * 15 14 12 18 18 N 1.31408 * 120.00236 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00049 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46887 * 89.99808 * 19 17 15 21 21 H 1.48493 * 109.47337 * 209.99853 * 19 17 15 22 22 H 1.48505 * 109.47146 * 330.00183 * 19 17 15 23 23 C 1.53003 * 109.47137 * 175.00256 * 8 7 6 24 24 C 1.53008 * 117.49751 * 132.40875 * 23 8 7 25 25 C 1.53002 * 117.49874 * 63.75204 * 23 8 7 26 26 C 1.52999 * 109.46785 * 240.00146 * 2 1 3 27 27 C 1.53777 * 113.61419 * 157.49922 * 26 2 1 28 28 C 1.53777 * 87.08382 * 220.01755 * 27 26 2 29 29 C 1.53775 * 113.61568 * 60.00156 * 26 2 1 30 30 H 1.08999 * 109.47404 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46888 * 299.99819 * 1 2 3 32 32 H 1.09002 * 109.47226 * 59.99708 * 1 2 3 33 33 H 0.96989 * 120.00385 * 0.02562 * 6 4 2 34 34 H 1.08999 * 109.47455 * 299.99919 * 7 6 4 35 35 H 1.09000 * 109.47187 * 60.00447 * 7 6 4 36 36 H 1.00896 * 110.99856 * 83.51314 * 10 8 7 37 37 H 1.09001 * 109.46990 * 300.22578 * 11 10 8 38 38 H 1.09001 * 109.47417 * 60.22328 * 11 10 8 39 39 H 0.97008 * 119.99514 * 0.02562 * 14 12 11 40 40 H 0.97005 * 120.00405 * 180.02562 * 18 17 15 41 41 H 1.09000 * 115.55145 * 278.07760 * 23 8 7 42 42 H 1.08997 * 117.49604 * 359.97438 * 24 23 8 43 43 H 1.08995 * 117.49309 * 145.02173 * 24 23 8 44 44 H 1.09003 * 117.49543 * 214.97983 * 25 23 8 45 45 H 1.08995 * 117.49921 * 359.97438 * 25 23 8 46 46 H 1.09007 * 112.85298 * 288.80145 * 26 2 1 47 47 H 1.08999 * 113.61858 * 334.56409 * 27 26 2 48 48 H 1.08998 * 113.61709 * 105.47052 * 27 26 2 49 49 H 1.08999 * 113.61986 * 270.88551 * 28 27 26 50 50 H 1.08998 * 113.69666 * 139.98807 * 28 27 26 51 51 H 1.09008 * 113.61794 * 254.52644 * 29 26 2 52 52 H 1.08996 * 113.61800 * 25.43007 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1191 6 7 1.7067 -0.2500 2.4545 7 6 2.1946 -0.9411 3.6506 8 6 1.6853 -0.2194 4.8999 9 1 2.1208 0.7788 4.9458 10 7 0.2214 -0.1129 4.8413 11 6 -0.2518 1.0578 5.5920 12 6 -1.7550 1.1306 5.5138 13 8 -2.3716 0.2898 4.8942 14 7 -2.4144 2.1296 6.1334 15 6 -3.7819 2.1955 6.0627 16 1 -4.3309 1.4473 5.5103 17 6 -4.4617 3.2257 6.7010 18 7 -3.7938 4.1364 7.3728 19 14 -6.3250 3.3161 6.6042 20 1 -6.9167 2.5582 7.7358 21 1 -6.7563 4.7350 6.6794 22 1 -6.7831 2.7267 5.3204 23 6 2.0896 -1.0099 6.1460 24 6 2.7243 -0.2323 7.3008 25 6 3.5849 -1.1562 6.4354 26 6 2.0398 -0.7212 -1.2493 27 6 3.4725 -0.3277 -1.6461 28 6 2.9920 -0.3573 -3.1066 29 6 1.5810 -0.0722 -2.5657 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.1488 0.5383 2.5436 34 1 1.8309 -1.9686 3.6505 35 1 3.2846 -0.9415 3.6508 36 1 -0.2163 -0.9581 5.1759 37 1 0.0539 0.9688 6.6345 38 1 0.1786 1.9627 5.1632 39 1 -1.9213 2.8018 6.6293 40 1 -4.2683 4.8554 7.8188 41 1 1.4432 -1.8499 6.4001 42 1 2.8541 0.8423 7.1726 43 1 2.4956 -0.5611 8.3145 44 1 3.9221 -2.0925 6.8803 45 1 4.2805 -0.6897 5.7380 46 1 1.8757 -1.7983 -1.2130 47 1 3.7638 0.6648 -1.3024 48 1 4.2150 -1.0915 -1.4152 49 1 3.0894 -1.3349 -3.5787 50 1 3.3967 0.4498 -3.7173 51 1 0.7964 -0.6299 -3.0773 52 1 1.3551 0.9900 -2.4733 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266415011.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:18 Heat of formation + Delta-G solvation = -43.788491 kcal Electronic energy + Delta-G solvation = -29482.879040 eV Core-core repulsion = 25483.048111 eV Total energy + Delta-G solvation = -3999.830929 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.26332 -39.05676 -38.22632 -37.78380 -35.10936 -34.13694 -33.60297 -32.83250 -31.25675 -29.24205 -26.37083 -26.12504 -25.33176 -24.33030 -23.38238 -22.66023 -22.12690 -20.72065 -19.88484 -19.46169 -19.23177 -17.93412 -17.10945 -16.59115 -16.05108 -15.63721 -15.51605 -15.34414 -15.11009 -14.67091 -14.56801 -14.26805 -14.07106 -13.77310 -13.70294 -13.31362 -12.98859 -12.68775 -12.63726 -12.45156 -12.28606 -12.13540 -11.97342 -11.73556 -11.69567 -11.55460 -11.53236 -11.37699 -11.23329 -11.07491 -10.64585 -10.64284 -10.44310 -10.42332 -10.27024 -10.24491 -10.17765 -9.55177 -9.54347 -8.88484 -8.52771 -8.14087 -7.99887 -6.45371 -3.86217 2.78431 3.15075 3.24172 3.25501 3.29917 3.64317 3.86785 4.01431 4.24807 4.40635 4.49454 4.51557 4.60287 4.72655 4.73563 4.84373 4.93419 5.06042 5.08061 5.09691 5.18626 5.24363 5.30139 5.31100 5.40831 5.48458 5.57607 5.58084 5.65303 5.69121 5.72897 5.73818 5.77549 5.79615 5.85505 5.89597 5.92826 5.95762 5.96118 6.02919 6.16469 6.19718 6.22829 6.40311 6.58289 7.10671 7.51729 7.55267 7.70034 8.02411 8.38191 8.57176 9.14343 9.50428 10.01606 10.72256 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009230 B = 0.002706 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.808786 B =10346.799700 C =12913.710279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 H 0.093 0.907 4 C 0.517 3.483 5 O -0.550 6.550 6 N -0.713 5.713 7 C 0.138 3.862 8 C 0.104 3.896 9 H 0.082 0.918 10 N -0.658 5.658 11 C 0.050 3.950 12 C 0.440 3.560 13 O -0.583 6.583 14 N -0.563 5.563 15 C -0.299 4.299 16 H 0.103 0.897 17 C 0.023 3.977 18 N -0.902 5.902 19 Si 0.929 3.071 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.269 1.269 23 C -0.182 4.182 24 C -0.175 4.175 25 C -0.174 4.174 26 C -0.087 4.087 27 C -0.133 4.133 28 C -0.144 4.144 29 C -0.137 4.137 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.408 0.592 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.354 0.646 37 H 0.047 0.953 38 H 0.084 0.916 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.076 0.924 48 H 0.068 0.932 49 H 0.078 0.922 50 H 0.064 0.936 51 H 0.066 0.934 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.984 -5.066 -9.966 19.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 H 0.111 0.889 4 C 0.303 3.697 5 O -0.429 6.429 6 N -0.364 5.364 7 C 0.014 3.986 8 C -0.007 4.007 9 H 0.101 0.899 10 N -0.289 5.289 11 C -0.083 4.083 12 C 0.225 3.775 13 O -0.467 6.467 14 N -0.200 5.200 15 C -0.429 4.429 16 H 0.121 0.879 17 C -0.179 4.179 18 N -0.543 5.543 19 Si 0.756 3.244 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.202 4.202 24 C -0.212 4.212 25 C -0.212 4.212 26 C -0.105 4.105 27 C -0.171 4.171 28 C -0.181 4.181 29 C -0.174 4.174 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.244 0.756 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.174 0.826 37 H 0.065 0.935 38 H 0.102 0.898 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.126 0.874 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.095 0.905 48 H 0.087 0.913 49 H 0.096 0.904 50 H 0.083 0.917 51 H 0.085 0.915 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 15.957 -5.833 -10.956 20.216 hybrid contribution -0.804 0.653 1.552 1.866 sum 15.153 -5.180 -9.405 18.571 Atomic orbital electron populations 1.21754 0.92371 1.03005 1.03025 1.21340 0.97843 1.00207 0.92800 0.88883 1.20611 0.79895 0.84539 0.84674 1.90655 1.38587 1.26596 1.87014 1.45843 1.53190 1.32418 1.04974 1.21193 0.97850 0.96497 0.83092 1.21455 0.89523 0.98290 0.91407 0.89946 1.60241 1.02868 1.06929 1.58896 1.21719 0.95463 0.94424 0.96658 1.19805 0.88250 0.84691 0.84736 1.90535 1.68750 1.41489 1.45918 1.41866 1.07508 1.24467 1.46138 1.19690 0.81576 1.10739 1.30859 0.87940 1.25257 1.00637 0.95543 0.96472 1.69607 1.36587 1.14328 1.33775 0.85869 0.82256 0.77326 0.78921 1.20430 1.20913 1.19381 1.23126 0.96693 1.02680 0.97717 1.23016 1.04098 0.98231 0.95822 1.22905 0.93136 1.01691 1.03449 1.22344 0.95995 1.00361 0.91846 1.22904 0.96937 1.01534 0.95699 1.22805 0.96983 1.01689 0.96643 1.22970 0.96921 1.01032 0.96479 0.92100 0.91356 0.91573 0.75600 0.91607 0.91575 0.82561 0.93482 0.89819 0.77500 0.91860 0.87417 0.88651 0.88749 0.88821 0.88658 0.88542 0.90543 0.91343 0.90376 0.91689 0.91487 0.90052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.89 37.15 0.33 -1.18 16 2 C -0.10 -1.05 2.48 -91.78 -0.23 -1.28 16 3 H 0.09 0.85 7.94 -51.93 -0.41 0.43 16 4 C 0.52 6.78 7.15 -10.98 -0.08 6.70 16 5 O -0.55 -8.93 15.84 5.56 0.09 -8.84 16 6 N -0.71 -8.64 5.28 -60.29 -0.32 -8.96 16 7 C 0.14 1.62 5.19 -4.04 -0.02 1.60 16 8 C 0.10 1.15 2.35 -67.71 -0.16 1.00 16 9 H 0.08 0.87 7.55 -51.93 -0.39 0.48 16 10 N -0.66 -9.35 5.33 -107.99 -0.58 -9.93 16 11 C 0.05 0.80 5.96 -4.98 -0.03 0.77 16 12 C 0.44 9.80 7.82 -10.98 -0.09 9.71 16 13 O -0.58 -15.09 15.77 5.55 0.09 -15.00 16 14 N -0.56 -13.73 5.29 -10.96 -0.06 -13.79 16 15 C -0.30 -8.13 9.68 -14.94 -0.14 -8.28 16 16 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 17 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -24.04 13.05 55.50 0.72 -23.32 16 19 Si 0.93 20.70 29.55 -169.99 -5.02 15.67 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 C -0.18 -1.85 5.11 -90.61 -0.46 -2.31 16 24 C -0.17 -1.65 10.18 -26.69 -0.27 -1.92 16 25 C -0.17 -1.53 9.86 -26.69 -0.26 -1.79 16 26 C -0.09 -0.88 2.54 -89.81 -0.23 -1.11 16 27 C -0.13 -1.27 7.60 -25.92 -0.20 -1.47 16 28 C -0.14 -1.17 8.08 -25.92 -0.21 -1.38 16 29 C -0.14 -1.14 6.68 -25.92 -0.17 -1.31 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.78 7.56 -51.93 -0.39 0.39 16 32 H 0.07 0.60 7.45 -51.93 -0.39 0.21 16 33 H 0.41 4.80 7.55 -40.82 -0.31 4.49 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.75 7.72 -51.93 -0.40 0.35 16 36 H 0.35 5.51 8.01 -39.29 -0.31 5.19 16 37 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.08 1.21 8.06 -51.93 -0.42 0.79 16 39 H 0.39 9.15 7.90 -40.82 -0.32 8.83 16 40 H 0.27 6.86 8.31 -40.82 -0.34 6.53 16 41 H 0.11 1.15 7.95 -51.93 -0.41 0.74 16 42 H 0.10 0.88 8.07 -51.93 -0.42 0.46 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.09 0.79 7.90 -51.93 -0.41 0.38 16 46 H 0.10 1.14 7.86 -51.93 -0.41 0.74 16 47 H 0.08 0.68 7.96 -51.93 -0.41 0.27 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 52 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 422.79 15.07 6.37 6.37 Total: -1.00 -31.03 422.79 -10.17 -41.20 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: -9.15 Total: 18.35 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -2.32 Total: -1.76 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.23 Total: -55.98 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: 0.18 Total: -23.84 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -31.03 -10.17 -41.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266415011.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.586 kcal (2) G-P(sol) polarization free energy of solvation -31.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds