Wall clock time and date at job start Tue Mar 31 2020 20:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47404 * 2 1 4 4 C 1.50700 * 109.47265 * 120.00459 * 2 1 3 5 5 O 1.21277 * 120.00154 * 119.99314 * 4 2 1 6 6 N 1.34778 * 119.99632 * 299.99728 * 4 2 1 7 7 C 1.46500 * 119.99674 * 179.97438 * 6 4 2 8 8 C 1.52999 * 109.47006 * 179.97438 * 7 6 4 9 9 H 1.09004 * 109.47121 * 295.00002 * 8 7 6 10 10 N 1.46898 * 109.47347 * 55.00353 * 8 7 6 11 11 C 1.46897 * 111.00303 * 207.47262 * 10 8 7 12 12 C 1.50700 * 109.47128 * 180.22562 * 11 10 8 13 13 O 1.21293 * 120.00334 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00105 * 179.97438 * 12 11 10 15 15 C 1.37092 * 120.00034 * 180.02562 * 14 12 11 16 16 H 1.08000 * 120.00270 * 359.97438 * 15 14 12 17 17 C 1.38950 * 119.99768 * 180.02562 * 15 14 12 18 18 N 1.31408 * 120.00236 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00049 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46887 * 89.99808 * 19 17 15 21 21 H 1.48493 * 109.47337 * 209.99853 * 19 17 15 22 22 H 1.48505 * 109.47146 * 330.00183 * 19 17 15 23 23 C 1.53003 * 109.47137 * 175.00256 * 8 7 6 24 24 C 1.53008 * 117.49751 * 132.40875 * 23 8 7 25 25 C 1.53002 * 117.49874 * 63.75204 * 23 8 7 26 26 C 1.52999 * 109.46785 * 240.00146 * 2 1 3 27 27 C 1.53777 * 113.61419 * 157.49922 * 26 2 1 28 28 C 1.53777 * 87.08382 * 220.01755 * 27 26 2 29 29 C 1.53775 * 113.61568 * 60.00156 * 26 2 1 30 30 H 1.08999 * 109.47404 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46888 * 299.99819 * 1 2 3 32 32 H 1.09002 * 109.47226 * 59.99708 * 1 2 3 33 33 H 0.96989 * 120.00385 * 0.02562 * 6 4 2 34 34 H 1.08999 * 109.47455 * 299.99919 * 7 6 4 35 35 H 1.09000 * 109.47187 * 60.00447 * 7 6 4 36 36 H 1.00896 * 110.99856 * 83.51314 * 10 8 7 37 37 H 1.09001 * 109.46990 * 300.22578 * 11 10 8 38 38 H 1.09001 * 109.47417 * 60.22328 * 11 10 8 39 39 H 0.97008 * 119.99514 * 0.02562 * 14 12 11 40 40 H 0.97005 * 120.00405 * 180.02562 * 18 17 15 41 41 H 1.09000 * 115.55145 * 278.07760 * 23 8 7 42 42 H 1.08997 * 117.49604 * 359.97438 * 24 23 8 43 43 H 1.08995 * 117.49309 * 145.02173 * 24 23 8 44 44 H 1.09003 * 117.49543 * 214.97983 * 25 23 8 45 45 H 1.08995 * 117.49921 * 359.97438 * 25 23 8 46 46 H 1.09007 * 112.85298 * 288.80145 * 26 2 1 47 47 H 1.08999 * 113.61858 * 334.56409 * 27 26 2 48 48 H 1.08998 * 113.61709 * 105.47052 * 27 26 2 49 49 H 1.08999 * 113.61986 * 270.88551 * 28 27 26 50 50 H 1.08998 * 113.69666 * 139.98807 * 28 27 26 51 51 H 1.09008 * 113.61794 * 254.52644 * 29 26 2 52 52 H 1.08996 * 113.61800 * 25.43007 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1191 6 7 1.7067 -0.2500 2.4545 7 6 2.1946 -0.9411 3.6506 8 6 1.6853 -0.2194 4.8999 9 1 2.1208 0.7788 4.9458 10 7 0.2214 -0.1129 4.8413 11 6 -0.2518 1.0578 5.5920 12 6 -1.7550 1.1306 5.5138 13 8 -2.3716 0.2898 4.8942 14 7 -2.4144 2.1296 6.1334 15 6 -3.7819 2.1955 6.0627 16 1 -4.3309 1.4473 5.5103 17 6 -4.4617 3.2257 6.7010 18 7 -3.7938 4.1364 7.3728 19 14 -6.3250 3.3161 6.6042 20 1 -6.9167 2.5582 7.7358 21 1 -6.7563 4.7350 6.6794 22 1 -6.7831 2.7267 5.3204 23 6 2.0896 -1.0099 6.1460 24 6 2.7243 -0.2323 7.3008 25 6 3.5849 -1.1562 6.4354 26 6 2.0398 -0.7212 -1.2493 27 6 3.4725 -0.3277 -1.6461 28 6 2.9920 -0.3573 -3.1066 29 6 1.5810 -0.0722 -2.5657 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.1488 0.5383 2.5436 34 1 1.8309 -1.9686 3.6505 35 1 3.2846 -0.9415 3.6508 36 1 -0.2163 -0.9581 5.1759 37 1 0.0539 0.9688 6.6345 38 1 0.1786 1.9627 5.1632 39 1 -1.9213 2.8018 6.6293 40 1 -4.2683 4.8554 7.8188 41 1 1.4432 -1.8499 6.4001 42 1 2.8541 0.8423 7.1726 43 1 2.4956 -0.5611 8.3145 44 1 3.9221 -2.0925 6.8803 45 1 4.2805 -0.6897 5.7380 46 1 1.8757 -1.7983 -1.2130 47 1 3.7638 0.6648 -1.3024 48 1 4.2150 -1.0915 -1.4152 49 1 3.0894 -1.3349 -3.5787 50 1 3.3967 0.4498 -3.7173 51 1 0.7964 -0.6299 -3.0773 52 1 1.3551 0.9900 -2.4733 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266415011.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:17 Heat of formation + Delta-G solvation = -64.131713 kcal Electronic energy + Delta-G solvation = -29483.761189 eV Core-core repulsion = 25483.048111 eV Total energy + Delta-G solvation = -4000.713078 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.22071 -40.29696 -39.47901 -38.85658 -36.21710 -35.84108 -34.87970 -33.75676 -33.21685 -30.37767 -27.77853 -27.04836 -26.09272 -25.79885 -24.48476 -23.44134 -22.92670 -21.68315 -21.07335 -20.70490 -20.22814 -19.87615 -18.13831 -17.82208 -17.21958 -16.78779 -16.70271 -16.39405 -16.25493 -16.06285 -15.79611 -15.52599 -15.36690 -14.86309 -14.78590 -14.65459 -14.00619 -13.88175 -13.57945 -13.50892 -13.35982 -13.33442 -13.11800 -13.00888 -12.94834 -12.69085 -12.46761 -12.43029 -12.39654 -12.22258 -12.11896 -12.08480 -11.48722 -11.41763 -11.38477 -11.20935 -11.03151 -10.97723 -10.56826 -10.30609 -9.98772 -9.93238 -9.33810 -8.44998 -5.92948 1.38611 1.42908 1.54946 1.74300 2.09037 2.28855 2.32005 2.83679 2.92603 3.23002 3.52457 3.60643 3.71698 3.75396 3.80920 3.93111 4.01269 4.06003 4.09145 4.16634 4.31822 4.33953 4.36552 4.45817 4.47461 4.51926 4.58806 4.63237 4.74295 4.82780 4.83733 4.88798 4.91471 4.93704 4.95962 5.03904 5.07714 5.12793 5.18175 5.20142 5.26808 5.33511 5.43032 5.43855 5.56355 5.66856 5.89326 6.10245 6.33399 6.62638 6.68849 7.15446 7.36000 7.59830 8.15242 8.72273 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009230 B = 0.002706 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.808786 B =10346.799700 C =12913.710279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 H 0.114 0.886 4 C 0.511 3.489 5 O -0.586 6.586 6 N -0.708 5.708 7 C 0.142 3.858 8 C 0.117 3.883 9 H 0.097 0.903 10 N -0.665 5.665 11 C 0.068 3.932 12 C 0.440 3.560 13 O -0.622 6.622 14 N -0.574 5.574 15 C -0.330 4.330 16 H 0.078 0.922 17 C -0.012 4.012 18 N -0.920 5.920 19 Si 0.989 3.011 20 H -0.273 1.273 21 H -0.271 1.271 22 H -0.273 1.273 23 C -0.194 4.194 24 C -0.173 4.173 25 C -0.162 4.162 26 C -0.094 4.094 27 C -0.136 4.136 28 C -0.138 4.138 29 C -0.129 4.129 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.411 0.589 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.345 0.655 37 H 0.066 0.934 38 H 0.108 0.892 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.072 0.928 47 H 0.085 0.915 48 H 0.051 0.949 49 H 0.077 0.923 50 H 0.079 0.921 51 H 0.070 0.930 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.784 -3.660 -10.186 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 H 0.132 0.868 4 C 0.299 3.701 5 O -0.467 6.467 6 N -0.359 5.359 7 C 0.017 3.983 8 C 0.007 3.993 9 H 0.115 0.885 10 N -0.296 5.296 11 C -0.065 4.065 12 C 0.227 3.773 13 O -0.508 6.508 14 N -0.211 5.211 15 C -0.460 4.460 16 H 0.096 0.904 17 C -0.212 4.212 18 N -0.561 5.561 19 Si 0.813 3.187 20 H -0.198 1.198 21 H -0.196 1.196 22 H -0.198 1.198 23 C -0.215 4.215 24 C -0.210 4.210 25 C -0.200 4.200 26 C -0.113 4.113 27 C -0.173 4.173 28 C -0.175 4.175 29 C -0.166 4.166 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.248 0.752 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.164 0.836 37 H 0.084 0.916 38 H 0.126 0.874 39 H 0.230 0.770 40 H 0.086 0.914 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.114 0.886 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.091 0.909 47 H 0.104 0.896 48 H 0.070 0.930 49 H 0.096 0.904 50 H 0.098 0.902 51 H 0.089 0.911 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 16.778 -4.403 -11.158 20.625 hybrid contribution -0.998 0.141 1.624 1.912 sum 15.780 -4.263 -9.534 18.923 Atomic orbital electron populations 1.21713 0.92367 1.02106 1.03460 1.21362 0.97618 1.00927 0.91598 0.86779 1.21126 0.79282 0.84153 0.85580 1.90637 1.40322 1.28204 1.87525 1.45875 1.52777 1.32280 1.04979 1.21179 0.98209 0.95629 0.83296 1.21376 0.87357 0.99105 0.91483 0.88482 1.60215 1.04787 1.05933 1.58706 1.21558 0.90505 0.96100 0.98287 1.20888 0.90831 0.82963 0.82604 1.90510 1.70512 1.42653 1.47152 1.41927 1.06835 1.25377 1.46977 1.19622 0.83148 1.11138 1.32075 0.90431 1.25976 1.04618 0.94859 0.95743 1.69662 1.38038 1.14549 1.33874 0.84984 0.77289 0.77779 0.78654 1.19850 1.19620 1.19788 1.23004 0.97864 1.02871 0.97732 1.23085 1.03721 0.98635 0.95588 1.22971 0.92107 1.01921 1.03016 1.22323 0.96980 0.99191 0.92760 1.22931 0.96005 1.01416 0.96951 1.22788 0.96620 1.02281 0.95833 1.22961 0.97162 1.01588 0.94878 0.93665 0.92304 0.89680 0.75210 0.93443 0.90771 0.83579 0.91647 0.87405 0.76999 0.91378 0.88285 0.88020 0.88597 0.88120 0.87841 0.90915 0.89609 0.93034 0.90389 0.90247 0.91146 0.88733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.89 71.98 0.64 -2.20 16 2 C -0.09 -1.89 2.48 -11.54 -0.03 -1.92 16 3 H 0.11 1.83 7.94 -2.39 -0.02 1.82 16 4 C 0.51 13.37 7.15 87.66 0.63 13.99 16 5 O -0.59 -19.42 15.84 -3.02 -0.05 -19.47 16 6 N -0.71 -16.75 5.28 -463.06 -2.45 -19.20 16 7 C 0.14 3.23 5.19 86.38 0.45 3.68 16 8 C 0.12 2.41 2.35 44.92 0.11 2.52 16 9 H 0.10 1.77 7.55 -2.38 -0.02 1.75 16 10 N -0.67 -18.35 5.33 -495.58 -2.64 -20.99 16 11 C 0.07 2.06 5.96 85.56 0.51 2.57 16 12 C 0.44 19.60 7.82 87.66 0.69 20.28 16 13 O -0.62 -32.83 15.77 -3.07 -0.05 -32.88 16 14 N -0.57 -28.14 5.29 -306.98 -1.62 -29.76 16 15 C -0.33 -18.24 9.68 84.04 0.81 -17.42 16 16 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 17 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 18 N -0.92 -48.52 13.05 21.66 0.28 -48.24 16 19 Si 0.99 42.17 29.55 68.60 2.03 44.20 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 23 C -0.19 -3.67 5.11 -10.79 -0.06 -3.72 16 24 C -0.17 -2.88 10.18 30.62 0.31 -2.57 16 25 C -0.16 -2.51 9.86 30.62 0.30 -2.21 16 26 C -0.09 -1.87 2.54 -10.27 -0.03 -1.89 16 27 C -0.14 -2.48 7.60 31.12 0.24 -2.25 16 28 C -0.14 -2.02 8.08 31.12 0.25 -1.77 16 29 C -0.13 -1.92 6.68 31.12 0.21 -1.71 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.31 7.56 -2.39 -0.02 1.29 16 32 H 0.08 1.40 7.45 -2.39 -0.02 1.39 16 33 H 0.41 9.23 7.55 -92.72 -0.70 8.53 16 34 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.07 1.60 7.72 -2.39 -0.02 1.58 16 36 H 0.34 10.74 8.01 -89.70 -0.72 10.02 16 37 H 0.07 1.80 8.10 -2.39 -0.02 1.78 16 38 H 0.11 2.82 8.06 -2.39 -0.02 2.80 16 39 H 0.40 18.42 7.90 -92.70 -0.73 17.69 16 40 H 0.28 13.70 8.31 -92.70 -0.77 12.93 16 41 H 0.10 2.07 7.95 -2.39 -0.02 2.05 16 42 H 0.10 1.58 8.07 -2.39 -0.02 1.56 16 43 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.10 1.45 7.90 -2.39 -0.02 1.43 16 46 H 0.07 1.79 7.86 -2.38 -0.02 1.77 16 47 H 0.09 1.39 7.96 -2.39 -0.02 1.37 16 48 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 52 H 0.09 1.19 8.10 -2.39 -0.02 1.17 16 Total: -1.00 -67.93 422.79 -0.22 -68.15 By element: Atomic # 1 Polarization: 54.19 SS G_CDS: -1.22 Total: 52.97 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 5.50 Total: 5.21 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -6.43 Total: -118.19 kcal Atomic # 8 Polarization: -52.24 SS G_CDS: -0.10 Total: -52.34 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -67.93 -0.22 -68.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266415011.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.020 kcal (2) G-P(sol) polarization free energy of solvation -67.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds